Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_07g0006010 | OGI:07014440 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr07:4827736-4827942 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggccgccctcgaggtggagctcgggacggtgaacggcgagaagatcgcgtcccggaacgactggccgcacgccaccctgtggaccgccccaggcgttgcgccgaaggaggcaaacacgctgccgcagctagtcacggaagggaaggcgaagcgggtggccaTAgaccctcccatcaccatatcaggagtgctggacttctactga |
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| CDS seq | atggccgccctcgaggtggagctcgggacggtgaacggcgagaagatcgcgtcccggaacgactggccgcacgccaccctgtggaccgccccaggcgttgcgccgaaggaggcaaacacgctgccgcagctagtcacggaagggaaggcgaagcgggtggccaTAgaccctcccatcaccatatcaggagtgctggacttctactga |
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| Protein seq | MAALEVELGTVNGEKIASRNDWPHATLWTAPGVAPKEANTLPQLVTEGKAKRVAIDPPITISGVLDFY |
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| Function | tRNA ligase 1 [UniProtKB/Swiss-Prot:Q0WL81] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_07g0006010 | OsLiXu_07g0006010.01 | Chr07 | 4827736 | 4827942 | + | NAM | ||
| CDS seq | atggccgccctcgaggtggagctcgggacggtgaacggcgagaagatcgcgtcccggaacgactggccgcacgccaccctgtggaccgccccaggcgttgcgccgaaggaggcaaacacgctgccgcagctagtcacggaagggaaggcgaagcgggtggccaTAgaccctcccatcaccatatcaggagtgctggacttctactga
More
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| Protein seq | MAALEVELGTVNGEKIASRNDWPHATLWTAPGVAPKEANTLPQLVTEGKAKRVAIDPPITISGVLDFY |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.165118 | 3.127582 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0191700 | RBH | 2.300088 | 2.144165 | 5.392417 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g09400 | RBH | 1.588812 | 1.621140 | 1.346593 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0191700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0005940 | RBH | 1.144644 | 7.960276 | 10.714240 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0005900 | RBH | 0.110877 | 2.622082 | 3.457809 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0005810 | RBH | 1.094877 | 5.092666 | 13.745809 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0005730 | RBH | 0.279705 | 0.211985 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0005890 | RBH | 5.172956 | 11.987675 | 22.695660 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0083600 | RBH | 4.2334315 | 18.9772165 | 11.8349595 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0006400 | RBH | 0.333446 | 0.615959 | 1.764449 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0085400 | RBH | 4.0059475 | 20.304572 | 13.6023315 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0005830 | RBH | 0.306175 | 0.094328 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0005830 | RBH | 0.235840 | 7.809484 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0005870 | RBH | 2.486528 | 9.771506 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0005840 | RBH | 0.331826 | 3.880472 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G006020 | RBH | 0.612061 | 4.155777 | 2.817114 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0005820 | RBH | 2.970361 | 11.103792 | 14.648224 |
