Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_07g0005550 | OGI:07013680 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr07:4463429-4466408 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | agtgcagccacactgctgtagtgtcgtctactcaatcccccgcccttcgcgtggatggctccggcgaggtccgccgtcgccgccgccgccgccggtagcacgtacaggcaacggaagctgcagcgtcaggtatagagATTttattggttggttccccacctctccttggttgcatctgttgaacggttgtcaaattttgtggccgtacttgtcctcgagatgatctcaagaaccagatcagatcttgcggattgcctgttattagtgggataattggtagtgagtggctggtcgagaaaagccaacctagtattagttgtgttttctcagggtccaatcttaggtaaggaatacttgttcaagcaagcataagtccataagggtgctggcttttccataatccacaatatccagctatggaatgcctcctattctcaacatttactcatgtaaattggttttctctggttgcaggattaaacccgcaaaaggatagccaaggttccagacttccagttataggtttaaagctaaaatttgaacatggtagaagctttggtcatagcagttgttcaaaagatttcatcagcacttgcagaagaaggatcgaagatacttgcttctaagttgaagaagcaagcacctgaccttcttgaagtaaccaataaaatgagactacttcaaagcgacttctcaatgttgcaagcattcatagctcaagtggctgtggacaggtccaatgatatggtacttgaggcctggatggaacaggtaaggctagcagcgcatgaagctgaggacattgtcgatgaatacacttatcttgttggccaaacggaagggactggcagtttcctaaagaaagcattcaaccaagcaatcgaagttaagaaatggcgcaagctttcagctcaggcaaaactagtagaggatcgtcTACaaaagatttctgaagcgaaaaatagatttgatatctcatttgcaagcagtggaagagagagtacagcaagttatccaagtaggcaccatcatttatctgaatattcatacttgaatgatgatgatgatttagttggtaatgcagaagagatgaagcgattaatagaatggttatgtgatgcaaaaaaagatcgcagtgtaatctccatatgtggaatgggagggttgggcaagacaactcttgctagtagcatttacaagaagaagaaattaaaagaacatttatttgccgtgcatggttcactgtctcacaaaatcacggtgttaaaaatctcctgaaaaagatctagtccaactcatgagcaaaactgaaaatattatggatggggctgataccatggattgtgtgagtcttgtggaacaacttcgaagatatctaaaagggaggagatacttaattgttctggatgacgtatggagtagggaggcctggcctttactagataatgcatttgttaagaacaacaatggcagccgagtagttatcacaactcgaatcgaaacggtagcatctctagcagatgcaaactatgaactgaagcttacacttctaccaaagcaggaagcctggactcttttctgtcaaaaggctttctcaagattagatgacagaagttgcccccataatctgaagaccgtcgctgaaagaatcgtggagaaatgccaaggtttgccactggctcttgtagctatagggagccttttatcgtacaaagaaatggatgagcatgagtgggagttgttctataatcaacttaggtggcagctcagtaacaatccagagctgagctgggtcgctagtgttctgaatctcagttacaatgatctccctagttatctaaagaattgctttctttactgcggcctgttccctgaagattatcgaattgagagaaaacggttaatcagattgtggatagccgaaggatttgttcaggatagaggacctgagacaacattgacagatgtagctgcatgtcacctgaaggaacttgctagtcgatcattgcttcaggttgtgaataggaatgaatatggaaggccaaagagattccagatgcatgatcttgttagggaaatatccctaaccatatctaagaaggaaaatttgctactacatgggactgtcctaactcagatggagttaccgatggatcacggcgtgtttctttacaaaaggatggcaatttagtccaagcagcaaaatgttcatctcagcttcggtccatgctcatgtttacagaggaaatcgttgtcttggttcacagattgctaccaaagctttagattgctaagggtcttgtgcctgagaaattgcaatgttcacaaggtaccagattctgtttctcagctgtttaacttgcactacctagacttgggatacacaaaactgaaagagataccgagttcgatagggaagcttagcaatctgcaaacgctttatctcaatggttctgtgctggagttacccagtgagaccacaatgttaactaagcttcaccatctacttatagatgtcgggcggtttgggaagtcagcgagtagcaaaataagttgcctgaaacatctacagactctgagaagcatagaagccaatagctacatagtgaaaaactttggatgcttgacaaggatgagaagtgtcggtatcatgaaggtgctggagtcccacaacactgatctatggacctcaatcagcaaaatgacatctctgaattcattgtctgttctcgcagaagatcgtgatcgatacgcccttgatctcggcaacttaaaacctttatctcacctggagaagctgatgataagtggcaggctacacaaaggagcaattcctcccgtttttgccagtttcacCaaactgagaagcttgagcctctgcttctctggtcttcatgaagatccgctcgcttcttttgctgccatgttccagaatctaggccatcttaactttaccggtgcttcgacggggcgaaactga
More
|
||||||||||
| CDS seq | atggtagaagctttggtcatagcagttgttcaaaagatttcatcagcacttgcagaagaaggatcgaagatacttgcttctaagttgaagaagcaagcacctgaccttcttgaagtaaccaataaaatgagactacttcaaagcgacttctcaatgttgcaagcattcatagctcaagtggctgtggacaggtccaatgatatggtacttgaggcctggatggaacaggtaaggctagcagcgcatgaagctgaggacattgtcgatgaatacacttatcttgttggccaaacggaagggactggcagtttcctaaagaaagcattcaaccaagcaatcgaagttaagaaatggcgcaagctttcagctcaggcaaaactagtagaggatcgtcTACaaaagatttctgaagcgaaaaatagatttgatatctcatttgcaagcagtggaagagagagtacagcaagttatccaagtaggcaccatcatttatctgaatattcatacttgaatgatgatgatgatttagttggtaatgcagaagagatgaagcgattaatagaatggttatgtgatgcaaaaaaagatcgcagtgtaatctccatatgtggaatgggagggttgggcaagacaactcttgctagtagcatttacaagaagaagaaattaaaagaacatttatttgccgtgcatgatctagtccaactcatgagcaaaactgaaaatattatggatggggctgataccatggattgtgtgagtcttgtggaacaacttcgaagatatctaaaagggaggagatacttaattgttctggatgacgtatggagtagggaggcctggcctttactagataatgcatttgttaagaacaacaatggcagccgagtagttatcacaactcgaatcgaaacggtagcatctctagcagatgcaaactatgaactgaagcttacacttctaccaaagcaggaagcctggactcttttctgtcaaaaggctttctcaagattagatgacagaagttgcccccataatctgaagaccgtcgctgaaagaatcgtggagaaatgccaaggtttgccactggctcttgtagctatagggagccttttatcgtacaaagaaatggatgagcatgagtgggagttgttctataatcaacttaggtggcagctcagtaacaatccagagctgagctgggtcgctagtgttctgaatctcagttacaatgatctccctagttatctaaagaattgctttctttactgcggcctgttccctgaagattatcgaattgagagaaaacggttaatcagattgtggatagccgaaggatttgttcaggatagaggacctgagacaacattgacagatgtagctgcatgtcacctgaaggaacttgctagtcgatcattgcttcagaggaaatcgttgtcttggttcacagattgctaccaaagctttagattgctaagggtcttgtgcctgagaaattgcaatgttcacaaggtaccagattctgtttctcagctgtttaacttgcactacctagacttgggatacacaaaactgaaagagataccgagttcgatagggaagcttagcaatctgcaaacgctttatctcaatggttctgtgctggagttacccagtgagaccacaatgttaactaagcttcaccatctacttatagatgtcgggcggtttgggaagtcagcgagtagcaaaataagttgcctgaaacatctacagactctgagaagcatagaagccaatagctacatagtgaaaaactttggatgcttgacaaggatgagaagtgtcggtatcatgaaggtgctggagtcccacaacactgatctatggacctcaatcagcaaaatgacatctctgaattcattgtctgttctcgcagaagatcgtgatcgatacgcccttgatctcggcaacttaaaacctttatctcacctggagaagctgatgataagtggcaggctacacaaaggagcaattcctcccgtttttgccagtttcacCaaactgagaagcttgagcctctgcttctctggtcttcatgaagatccgctcgcttcttttgctgccatgttccagaatctaggccatcttaactttaccggtgcttcgacggggcgaaactga
More
|
||||||||||
| Protein seq | MVEALVIAVVQKISSALAEEGSKILASKLKKQAPDLLEVTNKMRLLQSDFSMLQAFIAQVAVDRSNDMVLEAWMEQVRLAAHEAEDIVDEYTYLVGQTEGTGSFLKKAFNQAIEVKKWRKLSAQAKLVEDRLQKISEAKNRFDISFASSGRESTASYPSRHHHLSEYSYLNDDDDLVGNAEEMKRLIEWLCDAKKDRSVISICGMGGLGKTTLASSIYKKKKLKEHLFAVHDLVQLMSKTENIMDGADTMDCVSLVEQLRRYLKGRRYLIVLDDVWSREAWPLLDNAFVKNNNGSRVVITTRIETVASLADANYELKLTLLPKQEAWTLFCQKAFSRLDDRSCPHNLKTVAERIVEKCQGLPLALVAIGSLLSYKEMDEHEWELFYNQLRWQLSNNPELSWVASVLNLSYNDLPSYLKNCFLYCGLFPEDYRIERKRLIRLWIAEGFVQDRGPETTLTDVAACHLKELASRSLLQRKSLSWFTDCYQSFRLLRVLCLRNCNVHKVPDSVSQLFNLHYLDLGYTKLKEIPSSIGKLSNLQTLYLNGSVLELPSETTMLTKLHHLLIDVGRFGKSASSKISCLKHLQTLRSIEANSYIVKNFGCLTRMRSVGIMKVLESHNTDLWTSISKMTSLNSLSVLAEDRDRYALDLGNLKPLSHLEKLMISGRLHKGAIPPVFASFTKLRSLSLCFSGLHEDPLASFAAMFQNLGHLNFTGASTGRN |
||||||||||
| Function | Disease resistance protein RPM1 [UniProtKB/Swiss-Prot:Q39214] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_07g0005550 | OsLiXu_07g0005550.01 | Chr07 | 4463429 | 4466408 | + | NAM | ||
| CDS seq | atggtagaagctttggtcatagcagttgttcaaaagatttcatcagcacttgcagaagaaggatcgaagatacttgcttctaagttgaagaagcaagcacctgaccttcttgaagtaaccaataaaatgagactacttcaaagcgacttctcaatgttgcaagcattcatagctcaagtggctgtggacaggtccaatgatatggtacttgaggcctggatggaacaggtaaggctagcagcgcatgaagctgaggacattgtcgatgaatacacttatcttgttggccaaacggaagggactggcagtttcctaaagaaagcattcaaccaagcaatcgaagttaagaaatggcgcaagctttcagctcaggcaaaactagtagaggatcgtcTACaaaagatttctgaagcgaaaaatagatttgatatctcatttgcaagcagtggaagagagagtacagcaagttatccaagtaggcaccatcatttatctgaatattcatacttgaatgatgatgatgatttagttggtaatgcagaagagatgaagcgattaatagaatggttatgtgatgcaaaaaaagatcgcagtgtaatctccatatgtggaatgggagggttgggcaagacaactcttgctagtagcatttacaagaagaagaaattaaaagaacatttatttgccgtgcatgatctagtccaactcatgagcaaaactgaaaatattatggatggggctgataccatggattgtgtgagtcttgtggaacaacttcgaagatatctaaaagggaggagatacttaattgttctggatgacgtatggagtagggaggcctggcctttactagataatgcatttgttaagaacaacaatggcagccgagtagttatcacaactcgaatcgaaacggtagcatctctagcagatgcaaactatgaactgaagcttacacttctaccaaagcaggaagcctggactcttttctgtcaaaaggctttctcaagattagatgacagaagttgcccccataatctgaagaccgtcgctgaaagaatcgtggagaaatgccaaggtttgccactggctcttgtagctatagggagccttttatcgtacaaagaaatggatgagcatgagtgggagttgttctataatcaacttaggtggcagctcagtaacaatccagagctgagctgggtcgctagtgttctgaatctcagttacaatgatctccctagttatctaaagaattgctttctttactgcggcctgttccctgaagattatcgaattgagagaaaacggttaatcagattgtggatagccgaaggatttgttcaggatagaggacctgagacaacattgacagatgtagctgcatgtcacctgaaggaacttgctagtcgatcattgcttcagaggaaatcgttgtcttggttcacagattgctaccaaagctttagattgctaagggtcttgtgcctgagaaattgcaatgttcacaaggtaccagattctgtttctcagctgtttaacttgcactacctagacttgggatacacaaaactgaaagagataccgagttcgatagggaagcttagcaatctgcaaacgctttatctcaatggttctgtgctggagttacccagtgagaccacaatgttaactaagcttcaccatctacttatagatgtcgggcggtttgggaagtcagcgagtagcaaaataagttgcctgaaacatctacagactctgagaagcatagaagccaatagctacatagtgaaaaactttggatgcttgacaaggatgagaagtgtcggtatcatgaaggtgctggagtcccacaacactgatctatggacctcaatcagcaaaatgacatctctgaattcattgtctgttctcgcagaagatcgtgatcgatacgcccttgatctcggcaacttaaaacctttatctcacctggagaagctgatgataagtggcaggctacacaaaggagcaattcctcccgtttttgccagtttcacCaaactgagaagcttgagcctctgcttctctggtcttcatgaagatccgctcgcttcttttgctgccatgttccagaatctaggccatcttaactttaccggtgcttcgacggggcgaaactga
More
|
|||||||
| Protein seq | MVEALVIAVVQKISSALAEEGSKILASKLKKQAPDLLEVTNKMRLLQSDFSMLQAFIAQVAVDRSNDMVLEAWMEQVRLAAHEAEDIVDEYTYLVGQTEGTGSFLKKAFNQAIEVKKWRKLSAQAKLVEDRLQKISEAKNRFDISFASSGRESTASYPSRHHHLSEYSYLNDDDDLVGNAEEMKRLIEWLCDAKKDRSVISICGMGGLGKTTLASSIYKKKKLKEHLFAVHDLVQLMSKTENIMDGADTMDCVSLVEQLRRYLKGRRYLIVLDDVWSREAWPLLDNAFVKNNNGSRVVITTRIETVASLADANYELKLTLLPKQEAWTLFCQKAFSRLDDRSCPHNLKTVAERIVEKCQGLPLALVAIGSLLSYKEMDEHEWELFYNQLRWQLSNNPELSWVASVLNLSYNDLPSYLKNCFLYCGLFPEDYRIERKRLIRLWIAEGFVQDRGPETTLTDVAACHLKELASRSLLQRKSLSWFTDCYQSFRLLRVLCLRNCNVHKVPDSVSQLFNLHYLDLGYTKLKEIPSSIGKLSNLQTLYLNGSVLELPSETTMLTKLHHLLIDVGRFGKSASSKISCLKHLQTLRSIEANSYIVKNFGCLTRMRSVGIMKVLESHNTDLWTSISKMTSLNSLSVLAEDRDRYALDLGNLKPLSHLEKLMISGRLHKGAIPPVFASFTKLRSLSLCFSGLHEDPLASFAAMFQNLGHLNFTGASTGRN
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0186500 | RBH | 0.392514 | 0.000000 | 0.959353 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g08890 | RBH | 0.260497 | 0.000000 | 0.242358 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0186500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0005530 | RBH | 0.180872 | 1.665586 | 2.465246 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0005490 | RBH | 0.149309 | 1.022740 | 0.607169 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0005400 | RBH | 0.133655 | 1.408053 | 1.155676 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0005320 | RBH | 0.0 | 0.037440 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0005460 | RBH | 0.664446 | 5.134640 | 2.449018 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0078600 | RBH | 0.6731185 | 2.556613 | 2.1008345 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0005990 | RBH | 0.000000 | 0.150520 | 0.215121 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0080600 | RBH | 1.1726775 | 1.91931 | 6.3023165 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0005420 | RBH | 0.052583 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0005420 | RBH | 0.113665 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0005460 | RBH | 0.000000 | 4.001142 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0038930 | RBH | 0.031210 | 0.0 | 0.344873 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0005400 | RBH | 0.037470 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G005610 | RBH | 0.0 | 1.399653 | 0.893738 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0005390 | RBH | 0.150825 | 2.471691 | 1.857529 |
