Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_07g0004810 | OGI:07012080 | 14/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr07:3796220-3796510 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcatatcaccagcttcccatcggagttgacatcatcatcaatcaatgaaggaccgaagaacaatttgtgaaggtccttcatcatcaccatcatcgtcgtcatcagatctatgaaggtcCgaagaacagtttgtgaaggcttccacattgtcaacatctctgaatcaatgaagagccgaagaacgagttgtgaaggcttcaaggtaccgagggccgaagaacagtttgtgaaggctccgaggtccacttcattgaagaggagatggatctttttcttcttcatcgtcatcat |
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| CDS seq | atgatgacgatgaagaagaaaaagatccatctcctcttcaatgaagtggacctcggagccttcacaaactgttcttcggccctcggtaccttgaagccttcacaactcgttcttcggctcttcattgattcagagatgttgacaatgtggaagccttcacaaactgttcttcGgaccttcatagatctgatgacgacgatgatggtgatgatgaaggaccttcacaaattgttcttcggtccttcattgattgatgatgatgtcaactccgatgggaagctggtgatatga |
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| Protein seq | MMTMKKKKIHLLFNEVDLGAFTNCSSALGTLKPSQLVLRLFIDSEMLTMWKPSQTVLRTFIDLMTTMMVMMKDLHKLFFGPSLIDDDVNSDGKLVI |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_07g0004810 | OsLiXu_07g0004810.01 | Chr07 | 3796220 | 3796510 | - | NAM | ||
| CDS seq | atgatgacgatgaagaagaaaaagatccatctcctcttcaatgaagtggacctcggagccttcacaaactgttcttcggccctcggtaccttgaagccttcacaactcgttcttcggctcttcattgattcagagatgttgacaatgtggaagccttcacaaactgttcttcGgaccttcatagatctgatgacgacgatgatggtgatgatgaaggaccttcacaaattgttcttcggtccttcattgattgatgatgatgtcaactccgatgggaagctggtgatatga
More
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| Protein seq | MMTMKKKKIHLLFNEVDLGAFTNCSSALGTLKPSQLVLRLFIDSEMLTMWKPSQTVLRTFIDLMTTMMVMMKDLHKLFFGPSLIDDDVNSDGKLVI |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.295736 | 0.672322 | 0.471516 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g05280 | SBH | 0.616433 | 0.000000 | 0.266606 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0004820 | RBH | 0.400611 | 7.362937 | 2.407660 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0004780 | RBH | 0.324680 | 0.530510 | 2.439367 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0004670 | RBH | 0.000000 | 0.000000 | 5.392477 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0004610 | RBH | 0.000000 | 0.241824 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0004710 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0041800 | SBH | 4.4232855 | 1.880602 | 1.194004 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0005210 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0070500 | RBH | 0.896378 | 20.410266 | 3.4882435 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0004700 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0004690 | RBH | 0.000000 | 12.827538 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0004730 | RBH | 7.057536 | 10.525160 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0002990 | RBH | 0.622064 | 0.000000 | 0.579774 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0004680 | RBH | 0.127657 | 0.192618 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G004880 | RBH | 0.021252 | 0.031000 | 1.076031 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0004660 | RBH | 0.000000 | 0.000000 | 5.280186 |
