Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_07g0004360 | OGI:07011130 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr07:3519046-3519504 | ||||||||
| Gene Symbol | SAP18, OsSAP18, SAP10, OsSAP10 | ||||||||||
| DNA seq | tcaaatcttgttgatcttgggcgcgacgacgagcgggttatggcgcgcaatggcttcgcggccggccgccttgtagtcgaacgcgcacgcgtgcgcgccgcagaacatgccgccgcaccggcacgggaagcccagcagacccaccttcttccggcacgccttgcaccggttcttcgccttcgtcaccgtcgccggcggcgccatcaccgtcgtcccctcgcctccgacgccggagttgtccttgatcacgagcgttgataggtcggcgacgaccttcagcgatgttttgtcactgtccccggcagcggtgccgatgagatgtcgcggctgtggctgctgctgcttgtagcacttggagcagagcccgtcggtggccgcgctgccgaagaatccacagccggcggcgcacatcgccgcgccgccgccgttcctcgcctgcatctcgttccccggcgccat
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| CDS seq | atggcgccggggaacgagatgcaggcgaggaacggcggcggcgcggcgatgtgcgccgccggctgtggattcttcggcagcgcggccaccgacgggctctgctccaagtgctacaagcagcagcagccacagccgcgacatctcatcggcaccgctgccggggacagtgacaaaacatcgctgaaggtcgtcgccgacctatcaacgctcgtgatcaaggacaactccggcgtcggaggcgaggggacgacggtgatggcgccgccggcgacggtgacgaaggcgaagaaccggtgcaaggcgtgccggaagaaggtgggtctgctgggcttcccgtgccggtgcggcggcatgttctgcggcgcgcacgcgtgcgcgttcgactacaaggcggccggccgcgaagccattgcgcgccataacccgctcgtcgtcgcgcccaagatcaacaagatttga
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| Protein seq | MAPGNEMQARNGGGAAMCAAGCGFFGSAATDGLCSKCYKQQQPQPRHLIGTAAGDSDKTSLKVVADLSTLVIKDNSGVGGEGTTVMAPPATVTKAKNRCKACRKKVGLLGFPCRCGGMFCGAHACAFDYKAAGREAIARHNPLVVAPKINKI |
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| Function | Zinc finger A20 and AN1 domain-containing stress-associated protein 10 [UniProtKB/Swiss-Prot:Q69LE0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_07g0004360 | OsLiXu_07g0004360.01 | Chr07 | 3519046 | 3519504 | - | NAM | ||
| CDS seq | atggcgccggggaacgagatgcaggcgaggaacggcggcggcgcggcgatgtgcgccgccggctgtggattcttcggcagcgcggccaccgacgggctctgctccaagtgctacaagcagcagcagccacagccgcgacatctcatcggcaccgctgccggggacagtgacaaaacatcgctgaaggtcgtcgccgacctatcaacgctcgtgatcaaggacaactccggcgtcggaggcgaggggacgacggtgatggcgccgccggcgacggtgacgaaggcgaagaaccggtgcaaggcgtgccggaagaaggtgggtctgctgggcttcccgtgccggtgcggcggcatgttctgcggcgcgcacgcgtgcgcgttcgactacaaggcggccggccgcgaagccattgcgcgccataacccgctcgtcgtcgcgcccaagatcaacaagatttga
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| Protein seq | MAPGNEMQARNGGGAAMCAAGCGFFGSAATDGLCSKCYKQQQPQPRHLIGTAAGDSDKTSLKVVADLSTLVIKDNSGVGGEGTTVMAPPATVTKAKNRCKACRKKVGLLGFPCRCGGMFCGAHACAFDYKAAGREAIARHNPLVVAPKINKI |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0169500 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g07400 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0169500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0004370 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0004330 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0004220 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0004160 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0004260 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0061500 | RBH | 0.0173495 | 0.038636 | 0.018523 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0004770 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0064900 | RBH | 0.132363 | 0.005439 | 0.1371835 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0004250 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0004250 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0004280 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0037400 | SBH | 2.395340 | 2.532367 | 2.762871 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0004240 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G004400 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0004200 | RBH | 0.0 | 0.0 | 0.0 |
