Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_07g0002440 | OGI:07005670 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr07:1878576-1880827 | ||||||||
| Gene Symbol | OsSTA186 | ||||||||||
| DNA seq | agctcaaaattgaaatgtcagataacactgtcaaggtaactaatgacaactacagaattttagctgcctttgtttctatagtattgaaatacttatcacaaataaagaatttatagtatatatactagcagtaaaggacaccggagcatcgctctagttaattaccggtgagctttacgccactggttatcatgctcaccggaagacgcgttgtcgccggcgctgctggccggcgacgggcatccgtaaccctggtactcgctgctgtagtactccgggctggccggcgacgccgccgtccgcctgacccgctccatctgcgccgtgtacgatcccgaccccgagctggagtcgccgctgctggacgacatggcgctctgcccgggccgcgcgccgtcgccgagctcctccggcgacacgtccccctcgagcaccttcaccacctggctcatcttggggcgcctcctgccggcgtggcggacgcaggcgacggcgcaggcggcgacgcgcgccgcctccgcccggtcgtactcgccgcgcagccgcgggtcgacgatgtcgtcgtagccgccgccgccgccggcggccatcgcgcggggcagcgcctggcgcgcccagtcgacgaggcagtcggcgccgtaggagctccggtcggcggggcggcggccggtgagaagctccagcagcatgacgccgtaggagaacacgtcggacttgtccgttagcttcccgctcgacgcgtactccggcgccaggtacccgaacgtccccatcaccctcgtcgacacgtgcgtcacgttctcgctcgtcagctttgccatcccaaaatccgcaacctaaacacgatgatccaaattggtctcagagtcagcgatccatcgagacaatgttgcagaacacagcatatgatcgattgattgatcgatgatttgatttaccagtggctcgaagttgttgtccaggagaatgtttgccgactttatgtcacggtgaatgatccgaggattaccttcaacagaaaaaaaaaggagattatcacagactgaaccaaagccaccattgatcgatgaactgatcaaaattcggagttcaacttacattcctcgtgcaggtaggcgagcccctttgctgatccgaccgcgatgcgcaacctcgtcgtccacttcatcaccggtaaccccttttctgtacacgttgaagtataaatgaattgtccgtcttttatcatgttcatagtggagtaagtaactatgtaccgtgttataatgttaaggtataagtgaattgtccatcttttatcatgttcacgatgaagtaagtaaccatgtacggtattaaagtataagtgaattgcccgtcttttatcatgttaactatttaccatggaggtggtgttcgagagtgcggttggggacgaagtcgtagacgaggaggcgttgcgcgccagcgatgcagtagccgacgagggggacgaggtggcggtggtgcacgcggctgatcatgtccacctccgcctggaactcccgctccccctgcccgcccccggcgctgagctgcttcaccgccacctccttcccgtcgccgagcacgccgcggtacacgtacccgaacccgccctgccccagcatgttcccctccgagaacccgcccgtcgccgccgccagctcgtcgtacccgaacgcgttctcgtccaggcccgccggaacaggcggcggcgggggcggcacgagcggcggccgcacgacgacgtgcgggccggtcatgttcgtcgggtgcatcatcatgttcggcggcgtcgacggggcgccggtcttggtcgccgcccactgcggcctcgcgccgccggtgtggtggtagtagtacgccgtggtgttgcctgcgtcgtcgtcgcgccgtcgacgtcgccatggtcaggaacacgacgagcaatggcaagtcacagcaatggcgtgcgcgacgtgtgcctcaccttggtacccgaaggcggcggcgtggtgattctgccaccgctgcgtcgccgacctcctcctgcagcaccagGagcagcaggcgcaggcggcgaacaggaggacgaggagcagcgccgccgcgacggcggcgatgacgagctccgacgtcacgtcgagcccgccggcaaatgtgatcgacgtcgacagccgtctcgaggcgtgcgacggcgagtagaaatccgccatcgacgtcgacggcgaatcggtgcccctcggcgacgacggcgagggatcggaagacat
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| CDS seq | atgtcttccgatccctcgccgtcgtcgccgaggggcaccgattcgccgtcgacgtcgatggcggatttctactcgccgtcgcacgcctcgagacggctgtcgacgtcgatcacatttgccggcgggctcgacgtgacgtcggagctcgtcatcgccgccgtcgcggcggcgctgctcctcgtcctcctgttcgccgcctgcgcctgctgctCctggtgctgcaggaggaggtcggcgacgcagcggtggcagaatcaccacgccgccgccttcgggtaccaaggcaacaccacggcgtactactaccaccacaccggcggcgcgaggccgcagtgggcggcgaccaagaccggcgccccgtcgacgccgccgaacatgatgatgcacccgacgaacatgaccggcccgcacgtcgtcgtgcggccgccgctcgtgccgcccccgccgccgcctgttccggcgggcctggacgagaacgcgttcgggtacgacgagctggcggcggcgacgggcgggttctcggaggggaacatgctggggcagggcgggttcgggtacgtgtaccgcggcgtgctcggcgacgggaaggaggtggcggtgaagcagctcagcgccgggggcgggcagggggagcgggagttccaggcggaggtggacatgatcagccgcgtgcaccaccgccacctcgtccccctcgtcggctactgcatcgctggcgcgcaacgcctcctcgggttaccggtgatgaagtggacgacgaggttgcgcatcgcggtcggatcagcaaaggggctcgcctacctgcacgaggaatgtaatcctcggatcattcaccgtgacataaagtcggcaaacattctcctggacaacaacttcgagccactggttgcggattttgggatggcaaagctgacgagcgagaacgtgacgcacgtgtcgacgagggtgatggggacgttcgggtacctggcgccggagtacgcgtcgagcgggaagctaacggacaagtccgacgtgttctcctacggcgtcatgctgctggagcttctcaccggccgccgccccgccgaccggagctcctacggcgccgactgcctcgtcgactgggcgcgccaggcgctgccccgcgcgatggccgccggcggcggcggcggctacgacgacatcgtcgacccgcggctgcgcggcgagtacgaccgggcggaggcggcgcgcgtcgccgcctgcgccgtcgcctgcgtccgccacgccggcaggaggcgccccaagatgagccaggtggtgaaggtgctcgagggggacgtgtcgccggaggagctcggcgacggcgcgcggcccgggcagagcgccatgtcgtccagcagcggcgactccagctcggggtcgggatcgtacacggcgcagatggagcgggtcaggcggacggcggcgtcgccggccagcccggagtactacagcagcgagtaccagggttacggatgcccgtcgccggccagcagcgccggcgacaacgcgtcttccggtgagcatgataaccagtggcgtaaagctcaccgg
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| Protein seq | MSSDPSPSSPRGTDSPSTSMADFYSPSHASRRLSTSITFAGGLDVTSELVIAAVAAALLLVLLFAACACCSWCCRRRSATQRWQNHHAAAFGYQGNTTAYYYHHTGGARPQWAATKTGAPSTPPNMMMHPTNMTGPHVVVRPPLVPPPPPPVPAGLDENAFGYDELAAATGGFSEGNMLGQGGFGYVYRGVLGDGKEVAVKQLSAGGGQGEREFQAEVDMISRVHHRHLVPLVGYCIAGAQRLLGLPVMKWTTRLRIAVGSAKGLAYLHEECNPRIIHRDIKSANILLDNNFEPLVADFGMAKLTSENVTHVSTRVMGTFGYLAPEYASSGKLTDKSDVFSYGVMLLELLTGRRPADRSSYGADCLVDWARQALPRAMAAGGGGGYDDIVDPRLRGEYDRAEAARVAACAVACVRHAGRRRPKMSQVVKVLEGDVSPEELGDGARPGQSAMSSSSGDSSSGSGSYTAQMERVRRTAASPASPEYYSSEYQGYGCPSPASSAGDNASSGEHDNQWRKAHR |
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| Function | Proline-rich receptor-like protein kinase PERK4 [UniProtKB/Swiss-Prot:Q9ZNQ8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_07g0002440 | OsLiXu_07g0002440.01 | Chr07 | 1878576 | 1880827 | - | NAM | ||
| CDS seq | atgtcttccgatccctcgccgtcgtcgccgaggggcaccgattcgccgtcgacgtcgatggcggatttctactcgccgtcgcacgcctcgagacggctgtcgacgtcgatcacatttgccggcgggctcgacgtgacgtcggagctcgtcatcgccgccgtcgcggcggcgctgctcctcgtcctcctgttcgccgcctgcgcctgctgctCctggtgctgcaggaggaggtcggcgacgcagcggtggcagaatcaccacgccgccgccttcgggtaccaaggcaacaccacggcgtactactaccaccacaccggcggcgcgaggccgcagtgggcggcgaccaagaccggcgccccgtcgacgccgccgaacatgatgatgcacccgacgaacatgaccggcccgcacgtcgtcgtgcggccgccgctcgtgccgcccccgccgccgcctgttccggcgggcctggacgagaacgcgttcgggtacgacgagctggcggcggcgacgggcgggttctcggaggggaacatgctggggcagggcgggttcgggtacgtgtaccgcggcgtgctcggcgacgggaaggaggtggcggtgaagcagctcagcgccgggggcgggcagggggagcgggagttccaggcggaggtggacatgatcagccgcgtgcaccaccgccacctcgtccccctcgtcggctactgcatcgctggcgcgcaacgcctcctcgggttaccggtgatgaagtggacgacgaggttgcgcatcgcggtcggatcagcaaaggggctcgcctacctgcacgaggaatgtaatcctcggatcattcaccgtgacataaagtcggcaaacattctcctggacaacaacttcgagccactggttgcggattttgggatggcaaagctgacgagcgagaacgtgacgcacgtgtcgacgagggtgatggggacgttcgggtacctggcgccggagtacgcgtcgagcgggaagctaacggacaagtccgacgtgttctcctacggcgtcatgctgctggagcttctcaccggccgccgccccgccgaccggagctcctacggcgccgactgcctcgtcgactgggcgcgccaggcgctgccccgcgcgatggccgccggcggcggcggcggctacgacgacatcgtcgacccgcggctgcgcggcgagtacgaccgggcggaggcggcgcgcgtcgccgcctgcgccgtcgcctgcgtccgccacgccggcaggaggcgccccaagatgagccaggtggtgaaggtgctcgagggggacgtgtcgccggaggagctcggcgacggcgcgcggcccgggcagagcgccatgtcgtccagcagcggcgactccagctcggggtcgggatcgtacacggcgcagatggagcgggtcaggcggacggcggcgtcgccggccagcccggagtactacagcagcgagtaccagggttacggatgcccgtcgccggccagcagcgccggcgacaacgcgtcttccggtgagcatgataaccagtggcgtaaagctcaccgg
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| Protein seq | MSSDPSPSSPRGTDSPSTSMADFYSPSHASRRLSTSITFAGGLDVTSELVIAAVAAALLLVLLFAACACCSWCCRRRSATQRWQNHHAAAFGYQGNTTAYYYHHTGGARPQWAATKTGAPSTPPNMMMHPTNMTGPHVVVRPPLVPPPPPPVPAGLDENAFGYDELAAATGGFSEGNMLGQGGFGYVYRGVLGDGKEVAVKQLSAGGGQGEREFQAEVDMISRVHHRHLVPLVGYCIAGAQRLLGLPVMKWTTRLRIAVGSAKGLAYLHEECNPRIIHRDIKSANILLDNNFEPLVADFGMAKLTSENVTHVSTRVMGTFGYLAPEYASSGKLTDKSDVFSYGVMLLELLTGRRPADRSSYGADCLVDWARQALPRAMAAGGGGGYDDIVDPRLRGEYDRAEAARVAACAVACVRHAGRRRPKMSQVVKVLEGDVSPEELGDGARPGQSAMSSSSGDSSSGSGSYTAQMERVRRTAASPASPEYYSSEYQGYGCPSPASSAGDNASSGEHDNQWRKAHR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0137800 | RBH | 0.0 | 0.0 | 0.369028 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g04520 | RBH | 0.0 | 0.0 | 0.089151 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0137800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0002310 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0002310 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0002200 | RBH | 0.0 | 0.0 | 0.577411 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0002130 | RBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0002250 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0033400 | RBH | 0.0057625 | 0 | 0.007059 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0002330 | RBH | 0.0 | 0.0 | 0.070942 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0037600 | RBH | 0 | 0 | 0.005899 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0002370 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0002380 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0002360 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0002220 | RBH | 0.411900 | 1.768099 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0002330 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G002350 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0002270 | RBH | 0.0 | 0.0 | 0.0 |
