Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_07g0000250 | OGI:07000390 | 14/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr07:155064-158875 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcgcacctacagtccgagtaaaaccctagaagtgctagggcgacgagaaaggcgagaagaaggcgacactgggggcggcgagggagggtggcgctctagggcgtcgcagcggttggtttggtcggctgaatctggatctgtgcaggtacgcctcctcctcctcccttccccccttccacctcccccttcccccttctccccttcacattTgtgtggtttatctatttgggtgttgttttatatagtagtggatctgtactttTatcttggatttgatgtggatttggcattgtttaggtaggaaactagtagatcaggttagagtttggcaaTattttatttcgtagtgcctccaaaaggtggttgggatgtggatttaggtttgatccgtgcattgacaagggttttttttgtctgttttgcatgtaggaaAccctagtggtacagccatgaccgtacttgacactcttgcagtgcagttttAtttcaagggaaatttTgttgtgcaaggcaaagagaagagttattgtggtgggagggaggcaatgtcttacatagacCgagataaagtgtcccttcctgagttagtaggacatctacgagaccactacgaagtaatggatggcacgctTcttcactggTtggtgcctgggggagagctagatgatgggcttcgggcattagtagacgacaaggTgtgcaatttcatgtcggactgcatttgtgagggaggtgtggctgagatatatgcagaggagccaattctggttgatgtttcagattgtgaaccagatttgcaaagcatacatgagcaggaagaacatggtgctatccaaggattggaagacaatgttgagactgagaagaggctggttgtttacaaacaacaagaagagatgtttaatttTgaggcagaagatgatagtgatacagacagtgattacattcCtggggatgagtctgaatcagatgaaggggaagaggctgagagcatcaaaaagcagtacaaacaactgaagaagaagataaaggcagggcaagcaaacattctggatgatgttgcttTTgagggGtataaaaccaatccagtcatgcaggatggtgctgaagaaggtggtaatgaagaaggtgactctgatgagtccatagaggagataggcagtgatggtgaggTtactactagagcaagcaattatgcaaggttcaaggaggattcaactgttccacattttgaacttgggatgaagtttaactccaaagctcagttcagggcagccattacaagatatgccttgagtgaaaggaAggtgatcaacttcatcaaaAgtgatccaaaaagagtgagggcaaaatatgactggcccagctgcccttgggtatgtttgttgtcaaagacttcaaggtctgacagttggcagatagctactctggacaactgtcatgcatgcccccccagaagagataataagcttgtgacctcaaggaggatagctgagaagtatggcaagtttatatttgccaacccttcatggaacttggcacacatgaaggctacagtgcaagaggagatgtttgctgatgcttcaattgggaagctaaaaagagcaaagcaattagtgatgaaggcagctttagatgcaactaaagggcagtaccaaaAgttgtatagttatcagctagagcttcttagaagtaatccaggcagcacaattgttgtgaacagagaggtgggaatggatccacctgtattcaagaatatacatatgcttaggtgcactgaagaaaggattcctagcaggttgcaggaaagttatagggcttgatggttgtttcttcaagggtgcaactaatggagagttgatctgtgctctaggaagggatgcaaAtaaccaaatgtatccaattgcttgggcagtagtccacaaagaaaacaatgaggaatgggattggttcatggatttattgagtagtgatttgcaagttggtgatggggaagggtgggtcttcattttagaccaacaaaAggtatgaaattgctgatatgttgtgtataataatggtcttttatgaggtcttcatttgtactgacttgatctgtgcttgcaggggattctcaatgctgttcaaaaatgggctccaatggttgaacatagaaattgtgctaggcacatctatgccaactggaagaagcacttccatgacaaagaataacaaaagaagtttTggaggtgtgccaaaacttcttgcaccatgctgttcaatttggcaagggcacagctagtgctggtcactcatgcaggagcacaagccatcatgaacacacatccccaacatttgagtagagcttggttcaaggtaggttcaaattgtgattctgtagataataacttgtgtgaatcatttaacaagtggatcctagaggcaagattcttccCaATtataaccatgcttgagacaattagaagaaaagtaatggttaggatcaaggaccaaatagcaaactccaatagatggaacacagttatttgccctggtatatTaaagaagttgaatgtttacattgccgagtctgcatttTgtcatgcaatatcaaatggggctgaggcatatgaggtgaaacatcatgagcatagatttacagtgcagctagacaaaaaggaatgctcatgcaggtattggcagctatctggattgccttgccctcatgctattgcttgcatattctacaagactagccaacttgatggttacattgctgactgctactcagtggaaacatttaagaagatttatgcacactgcctacagccactagaagggatgagctcttggccagaggatgatagacagccactaaatgctcctgggtacatcaagacgccaggaacgccaaagacagagaggagaagagaggctcatgaacctgccaaagcaactagggcaagcaagattggaacaatcatcagatgtaggaaatgcaagtaggccacaacagatctacttgtgataagcataatggtgaaggtagtaccacttcaaggcctcagcaagtTccaaacccagatcaacatatagtgctatgaaacacaccacagagctcaactcaaagcaggaagaggaagtcagttgcatctgccaccatcagtgctgcaagcatgtcaaagacaaaaattcctagcaacCaaaaggtTagtcaagtgtcagtcaattttacattcatagcacaataaaccatttattcatttacctaattctgaaatattgtaggcactccaagttgttagggtcaatgcaacaacaagagttgcaacacAttaaggtggttctgCtactgtcaatttgcaagccattgtaccaggatcccagggatcgacaagtgcatcagtatagatcaagtctaggaaagcttCtatttctgtatcagctcaagaaccaggaaatggcaagggaaagaaacctactcctggtccactgctacttatacctccatgggaatctgccaaactgtgatgccatttgttgaaggctgtgatgccatctgttgcaaactgtgttgccatttgctatgttatgttatgtgtaatattctaaggcattgtattgccagacttgaagttcctgtgatgtttTataagacttaatgccagacttctgtgtgagttgccagacttcatgtcaggttctgaggcatTgtatTgtcagacctgaagtatgtgtgctgctttatggccagactatggctgatttagtgatgtaattgccagacttaaaggcaagatattaagtgttatatTccagacttatggcatatt
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| CDS seq | atgtttaatttTgaggcagaagatgatagtgatacagacagtgattacattcCtggggatgagtctgaatcagatgaaggggaagaggctgagagcatcaaaaagcagtacaaacaactgaagaagaagataaaggcagggcaagcaaacattctggatgatgttgcttTTgaggggaagaggaagtcagttgcatctgccaccatcagtgctgcaagcatgtcaaagacaaaaattcctagcaacCaaaagggtcaatgcaacaacaagagttgcaacacAttaaggtggttctgCtactgtcaatttgcaagccattgtaccaggatcccagggatcgacaagtgcatcagtatagatcaagtctag |
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| Protein seq | MFNFEAEDDSDTDSDYIPGDESESDEGEEAESIKKQYKQLKKKIKAGQANILDDVAFEGKRKSVASATISAASMSKTKIPSNQKGQCNNKSCNTLRWFCYCQFASHCTRIPGIDKCISIDQV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_07g0000250 | OsLiXu_07g0000250.01 | Chr07 | 155960 | 158870 | + | NAM | ||
| CDS seq | atgtttaatttTgaggcagaagatgatagtgatacagacagtgattacattcCtggggatgagtctgaatcagatgaaggggaagaggctgagagcatcaaaaagcagtacaaacaactgaagaagaagataaaggcagggcaagcaaacattctggatgatgttgcttTTgaggggaagaggaagtcagttgcatctgccaccatcagtgctgcaagcatgtcaaagacaaaaattcctagcaacCaaaagggtcaatgcaacaacaagagttgcaacacAttaaggtggttctgCtactgtcaatttgcaagccattgtaccaggatcccagggatcgacaagtgcatcagtatagatcaagtctag
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| Protein seq | MFNFEAEDDSDTDSDYIPGDESESDEGEEAESIKKQYKQLKKKIKAGQANILDDVAFEGKRKSVASATISAASMSKTKIPSNQKGQCNNKSCNTLRWFCYCQFASHCTRIPGIDKCISIDQV |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_07g0000250 | OsLiXu_07g0000250.02 | Chr07 | 155064 | 158875 | + | IsoSeq | ||
| CDS seq | atgcagaggagccaattctggttgatgtttcagattgtgaaccagatttgcaaagcatacatgagcaggaagaacatggtgctatccaaggattggaagacaatgttgagactgagaagaggctggttgtttacaaacaacaagaagagatgtttaatttTgaggcagaagatgatagtgatacagacagtgattacattcCtggggatgagtctgaatcagatgaaggggaagaggctgagagcatcaaaaagcagtacaaac
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| Protein seq | MQRSQFWLMFQIVNQICKAYMSRKNMVLSKDWKTMLRLRRGWLFTNNKKRCLILRQKMIVIQTVITFLGMSLNQMKGKRLRASKSSTN |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr07 | 158251 | 158348 | + | OsLiXu_07g0000250.02 | OsLiXu_07g0000250.01,OsLiXu_07g0000250.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.375936 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g01290 | RBH | 0.555730 | 0.273819 | 0.717910 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0000230 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0000260 | RBH | 0.085569 | 0.0 | 2.381391 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0000230 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0000230 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0000240 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0002700 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0000240 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0000240 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0000240 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0000240 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
