Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_06g0026680 | OGI:06079490 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr06:29595392-29598115 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gctggagtggatttccaatatatcagctgaattttcttgaatctcttcactgatttagacaaggactatcaactacgagaaacccttttaattccttgatagcaataacgaaaaacagtttgcaattcaaaaggcagagcgcgtgacagatccgacaataaggcccagtacaaacAaaaaaaaaaACAAGAACCAACATTTTTTCTCACTGCTCATCAGAACCGATTTACAGTCTCtctctctctctctcactaccaaatcatctctcatcttgctgttccaaagctttatgcgttccagttatgatgctcttcaggttgaagcagcggcagcgacgacatgatctgctgcatctcgagggtgaagtcgtcgtcggtggtgacgacggacgacggccccggagacggagccgacgacccgccggcggcggcggcggcgctgccgacgccgccggggttgaaccattcccccgggatggagcccggggcgatgccgaacatgccggagatctcctccaccgcgctcgccgccttcctcttgggtttcacgtcctctgcatcatcggtttcccccaatgcaacaagatgtgagatcgatggatcgatcgccgttgtgatgaactgatgatgatcgctcaccctatgctagatttgatatgaggtgattggtgtcagttccatcgattgatttgttatatgtgtttgaagcttgaatttctaaagtaaatttaacagtactatataaactttgatcgacgagctctttatcgatggttgctttgggcttcgccttgttagagtgtggttgtagttgtggttttcctccggttttcattgaatagtgttttctaaggtatgaatatgtttttttccttaaaataggacatccttttcttttaaatataaaacgtcgacaacaactgaccgttcgagaaaaaataaactttgatcaaaccatcggaaaaaatatgatgacaaatctaagacgggctatctggaaaatatggaatttagagtttagaaacttaaaataaactttgtagttttgtgttatgattgatgtttaatatgtagttttgtgataactgcgatatgtatttaagataaaatggccaatctgtagcttcgtgataagcaccataaatctgtagtttaatatataatttttcatttatagaatgaaaagtatatataatttcacaaaaattgctcgaacTtttttttatcgatgtggaaatgaaaataaaatttcgaaatttttggatgaactaaccgaagatgaagtcccatctcccgccataatgcgggtcctcttctCccggaggatactgcgaggtgacgtcactgtcgctggcgcctccgccgccgccgccgccatggagcacgtggcttgagctaggctcgcggtacatcagctcgggcatggagcccaccctgagcatggcggggttgggccgcggcaggaggtggtcgtcgccgagcagcagcgactcgagcagcgcgtcgcagccgccgctgccgccgctcatcgccgtctcgaattggttcgaagggagctcgcgcggtctgttcggcagcggcgggagccccgacgagacgaacccgccgccgccgccgccgtcgtggtggtggtggaacgccggctgctgctgctgctgctgcggcggcggcggcgcctgctggtggttggcgaggtggagaagctgcagcccctgcatctggttcaggagcgggtaattatggttgatcagcggcggcgaattcgcctgcgacgccgacggcgacggcgccaccaccggcgcctgctgcaaggcgaacggattgctcgggtcgaggaggagcggcggcggcagcatgccgccgccaccaccgccgccgccttcggcggacaggttgagattctgcgcgcggaggtgcgcgatctccctctcgatctccggcgggtacggcgtcaagccggcgcgcacccgccgcttgagccgcgtgttccagtagttcttgatctcgttgtccgtcctcccatgcagctgcacgccacgaacaccacgccaccgccatgattgatcaaactcgagagagaaagaaattagagattagatgggttgttgcttacgtaggaggagatgcgagcccacttgttgccgaggaggccatggaggcggaggatgaggcgctcctcgtcgggggagaagggccccttgcggaggtcggggcggaggtggttggcccaccggaggcggcagctcttgccgcagcgctgcagcccggtctcccgccgcacggcgttccagttcccctcgccgtgccgccgcacgtggtccaccagcagcttgtcctccgcctgcgtccacggccccttcttcaaccctcccccgccaccgccattgccgccgccgccgccaccttctCccccaccattgccgccgccgctcctcgccatactataactcgtcacttgattctctcctccccctctcagctcagagaagagGAgagagagagagagagagaaacaaactccggcgaactaattcacctctcaattaattcctccccttgatcaaaccaagaaattcaaccaagctgggagagggaagaattcttgaccctaatcaaccgacgaggagaggatcgatcgatcgccaccgccggcggggaaagctatagctggaacgacgacggcggcggcggcGggggggcctttccctggcgaggaggagaaaga
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| CDS seq | atgctgccgccgccgctcctcctcgacccgagcaatccgttcgccttgcagcaggcgccggtggtggcgccgtcgccgtcggcgtcgcaggcgaattcgccgccgctgatcaaccataattacccgctcctgaaccagatgcaggggctgcagcttctccacctcgccaaccaccagcaggcgccgccgccgccgcagcagcagcagcagcagccggcgttccaccaccaccacgacggcggcggcggcggcgggttcgtctcgtcggggctcccgccgctgccgaacagaccgcgcgagctcccttcgaaccaattcgagacggcgatgagcggcggcagcggcggctgcgacgcgctgctcgagtcgctgctgctcggcgacgaccacctcctgccgcggcccaaccccgccatgctcagggtgggctccatgcccgagctgatgtaccgcgagcctagctcaagccacgtgctccatggcggcggcggcggcggaggcgccagcgacagtgacgtcacctcgcagtatcctccggGagaagaggacccgcattatggcgggagatgggacttcatcttcgaggacgtgaaacccaagaggaaggcggcgagcgcggtggaggagatctccggcatgttcggcatcgccccgggctccatcccgggggaatggttcaaccccggcggcgtcggcagcgccgccgccgccgccggcgggtcgtcggctccgtctccggggccgtcgtccgtcgtcaccaccgacgacgacttcaccctcgagatgcagcagatcatgtcgtcgctgccgctgcttcaacctgaagagcatcataactggaacgcataa
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| Protein seq | MLPPPLLLDPSNPFALQQAPVVAPSPSASQANSPPLINHNYPLLNQMQGLQLLHLANHQQAPPPPQQQQQQPAFHHHHDGGGGGGFVSSGLPPLPNRPRELPSNQFETAMSGGSGGCDALLESLLLGDDHLLPRPNPAMLRVGSMPELMYREPSSSHVLHGGGGGGGASDSDVTSQYPPGEEDPHYGGRWDFIFEDVKPKRKAASAVEEISGMFGIAPGSIPGEWFNPGGVGSAAAAAGGSSAPSPGPSSVVTTDDDFTLEMQQIMSSLPLLQPEEHHNWNA |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_06g0026680 | OsLiXu_06g0026680.01 | Chr06 | 29595392 | 29597417 | - | NAM | ||
| CDS seq | atgctgccgccgccgctcctcctcgacccgagcaatccgttcgccttgcagcaggcgccggtggtggcgccgtcgccgtcggcgtcgcaggcgaattcgccgccgctgatcaaccataattacccgctcctgaaccagatgcaggggctgcagcttctccacctcgccaaccaccagcaggcgccgccgccgccgcagcagcagcagcagcagccggcgttccaccaccaccacgacggcggcggcggcggcgggttcgtctcgtcggggctcccgccgctgccgaacagaccgcgcgagctcccttcgaaccaattcgagacggcgatgagcggcggcagcggcggctgcgacgcgctgctcgagtcgctgctgctcggcgacgaccacctcctgccgcggcccaaccccgccatgctcagggtgggctccatgcccgagctgatgtaccgcgagcctagctcaagccacgtgctccatggcggcggcggcggcggaggcgccagcgacagtgacgtcacctcgcagtatcctccggGagaagaggacccgcattatggcgggagatgggacttcatcttcgaggacgtgaaacccaagaggaaggcggcgagcgcggtggaggagatctccggcatgttcggcatcgccccgggctccatcccgggggaatggttcaaccccggcggcgtcggcagcgccgccgccgccgccggcgggtcgtcggctccgtctccggggccgtcgtccgtcgtcaccaccgacgacgacttcaccctcgagatgcagcagatcatgtcgtcgctgccgctgcttcaacctgaagagcatcataactggaacgcataa
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| Protein seq | MLPPPLLLDPSNPFALQQAPVVAPSPSASQANSPPLINHNYPLLNQMQGLQLLHLANHQQAPPPPQQQQQQPAFHHHHDGGGGGGFVSSGLPPLPNRPRELPSNQFETAMSGGSGGCDALLESLLLGDDHLLPRPNPAMLRVGSMPELMYREPSSSHVLHGGGGGGGASDSDVTSQYPPGEEDPHYGGRWDFIFEDVKPKRKAASAVEEISGMFGIAPGSIPGEWFNPGGVGSAAAAAGGSSAPSPGPSSVVTTDDDFTLEMQQIMSSLPLLQPEEHHNWNA
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_06g0026680 | OsLiXu_06g0026680.02 | Chr06 | 29595465 | 29598115 | - | IsoSeq | ||
| CDS seq | atgggacttcatcttcgaggacgtgaaacccaagaggaaggcggcgagcgcggtggaggagatctccggcatgttcggcatcgccccgggctccatcccgggggaatggttcaaccccggcggcgtcggcagcgccgccgccgccgccggcgggtcgtcggctccgtctccggggccgtcgtccgtcgtcaccaccgacgacgacttcaccctcgagatgcagcagatcatgtcgtcgctgccgctgcttca
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| Protein seq | MGLHLRGRETQEEGGERGGGDLRHVRHRPGLHPGGMVQPRRRRQRRRRRRRVVGSVSGAVVRRHHRRRLHPRDAADHVVAAAAS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.599110 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0679400 | RBH | 0.0 | 0.0 | 7.236698 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g46560 | RBH | 0.0 | 0.0 | 1.855161 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0679400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0026370 | RBH | 0.0 | 0.0 | 0.984660 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0026200 | RBH | 0.0 | 0.0 | 3.070144 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0026370 | RBH | 0.0 | 0.0 | 7.061147 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0025990 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0026470 | RBH | 0.000000 | 0.0 | 5.873187 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0443800 | RBH | 0.007074 | 0.0061555 | 0.0061335 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0025870 | RBH | 0.0 | 0.0 | 2.248447 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0425800 | RBH | 0 | 0 | 0.0252015 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0026320 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0026420 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0026050 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0026290 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G026180 | RBH | 0.0 | 0.0 | 0.735579 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0026230 | RBH | 0.0 | 0.0 | 13.269588 |
