Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_06g0025790 | OGI:06077510 | 10/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr06:28804117-28805394 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggcggatggcgtcagcacgacggggatcgtgataggcgtcgagaggaccatgatggacgccgtgatgaccgggatgtgcggcgcaacgctgacagacgccgggaacgcaggggaagatacaacaatgaccaccccggcgccggtcacggccctgggtggcggcgagatgatgatgacgatgaggagcgcggccatggccgtgacgttgcgcaaggacgcggcgggctgcgggagcctgatgttcacttccgacGggagcgcacgcgttcgccaagagctcgtgaccgtggcggcaatgatcggcgtgatgggcgccgtagacaggacgacatctgcgaGgagcctggcgatctcgggggtggcgaccgcgacaacgacatctctcctggccttgccatggcgggggaattccagccaccaagatcgctctcccctctgcctctgctccgtgggttcgggaatgaagcccggtccgctggttggggagctacaatcccgcggcgagggtcttctcgcgcatacaagaggccatctcagtggcctctgcggaaggggccctatgccagctcgtcctggcggctgggttgcgattgccattgacaagctgtcagcgccagcaaccattgttgcgccaGggggtgtcgtcactccttttgctgctgccagccccgtggcgccgacggacaccctcgctcttgatgatcctgcaaatgccgagcaagctgaaccagcgcgacaggctgctgcaaatgacccggtcgacgatctgcaagcaacactggggcccactgtgcaacctgaggcggcgatacacacgccgatgctctctacctcggcagtcgacttccctcaggtacctccggcgatgccatgtgtcctcttcaaatctccacacccctcaatccttccctcgccaccgttgcagtgtgccgacgtgaacctgcagacgccgcctccacccatgccacgacaggacaggcacaggagttcaagactagcccagcaaccaacggtcggcctgccgtcggggttgaaggcacagctgaacctgtgccgccgaatggggttgacgccggaggaaggaactctcaccgacaaagtagtggctgacttcaaagccatgttcaacgcaccactgccgcaagacaccatcgatgccctcgagcagctgttcggtctgaatagggaggatgcaaaggcggcggacgcggtgctcgcgaagtacctGgggccgacggacgcctgctatagggaggaactggcggcggcgacatga
More
|
||||||||||
| CDS seq | atggcggatggcgtcagcacgacggggatcgtgataggcgtcgagaggaccatgatggacgccgtgatgaccgggatgtgcggcgcaacgctgacagacgccgggaacgcaggggaagatacaacaatgaccaccccggcgccggtcacggccctgggtggcggcgagatgatgatgacgatgaggagcgcggccatggccgtgacgttgcgcaaggacgcggcgggctgcgggagcctgatgttcacttccgacGggagcgcacgcgttcgccaagagctcgtgaccgtggcggcaatgatcggcgtgatgggcgccgtagacaggacgacatctgcgaGgagcctggcgatctcgggggtggcgaccgcgacaacgacatctctcctggccttgccatggcgggggaattccagccaccaagatcgctctcccctctgcctctgctccgtgggttcgggaatgaagcccggtccgctggttggggagctacaatcccgcggcgagggtcttctcgcgcatacaagaggccatctcagtggcctctgcggaaggggccctatgccagctcgtcctggcggctgggttgcgattgccattgacaagctgtcagcgccagcaaccattgttgcgccaGggggtgtcgtcactccttttgctgctgccagccccgtggcgccgacggacaccctcgctcttgatgatcctgcaaatgccgagcaagctgaaccagcgcgacaggctgctgcaaatgacccggtcgacgatctgcaagcaacactggggcccactgtgcaacctgaggcggcgatacacacgccgatgctctctacctcggcagtcgacttccctcaggtacctccggcgatgccatgtgtcctcttcaaatctccacacccctcaatccttccctcgccaccgttgcagtgtgccgacgtgaacctgcagacgccgcctccacccatgccacgacaggacaggcacaggagttcaagactagcccagcaaccaacggtcggcctgccgtcggggttgaaggcacagctgaacctgtgccgccgaatggggttgacgccggaggaaggaactctcaccgacaaagtagtggctgacttcaaagccatgttcaacgcaccactgccgcaagacaccatcgatgccctcgagcagctgttcggtctgaatagggaggatgcaaaggcggcggacgcggtgctcgcgaagtacctGgggccgacggacgcctgctatagggaggaactggcggcggcgacatga
More
|
||||||||||
| Protein seq | MADGVSTTGIVIGVERTMMDAVMTGMCGATLTDAGNAGEDTTMTTPAPVTALGGGEMMMTMRSAAMAVTLRKDAAGCGSLMFTSDGSARVRQELVTVAAMIGVMGAVDRTTSARSLAISGVATATTTSLLALPWRGNSSHQDRSPLCLCSVGSGMKPGPLVGELQSRGEGLLAHTRGHLSGLCGRGPMPARPGGWVAIAIDKLSAPATIVAPGGVVTPFAAASPVAPTDTLALDDPANAEQAEPARQAAANDPVDDLQATLGPTVQPEAAIHTPMLSTSAVDFPQVPPAMPCVLFKSPHPSILPSPPLQCADVNLQTPPPPMPRQDRHRSSRLAQQPTVGLPSGLKAQLNLCRRMGLTPEEGTLTDKVVADFKAMFNAPLPQDTIDALEQLFGLNREDAKAADAVLAKYLGPTDACYREELAAAT |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_06g0025790 | OsLiXu_06g0025790.01 | Chr06 | 28804117 | 28805394 | + | NAM | ||
| CDS seq | atggcggatggcgtcagcacgacggggatcgtgataggcgtcgagaggaccatgatggacgccgtgatgaccgggatgtgcggcgcaacgctgacagacgccgggaacgcaggggaagatacaacaatgaccaccccggcgccggtcacggccctgggtggcggcgagatgatgatgacgatgaggagcgcggccatggccgtgacgttgcgcaaggacgcggcgggctgcgggagcctgatgttcacttccgacGggagcgcacgcgttcgccaagagctcgtgaccgtggcggcaatgatcggcgtgatgggcgccgtagacaggacgacatctgcgaGgagcctggcgatctcgggggtggcgaccgcgacaacgacatctctcctggccttgccatggcgggggaattccagccaccaagatcgctctcccctctgcctctgctccgtgggttcgggaatgaagcccggtccgctggttggggagctacaatcccgcggcgagggtcttctcgcgcatacaagaggccatctcagtggcctctgcggaaggggccctatgccagctcgtcctggcggctgggttgcgattgccattgacaagctgtcagcgccagcaaccattgttgcgccaGggggtgtcgtcactccttttgctgctgccagccccgtggcgccgacggacaccctcgctcttgatgatcctgcaaatgccgagcaagctgaaccagcgcgacaggctgctgcaaatgacccggtcgacgatctgcaagcaacactggggcccactgtgcaacctgaggcggcgatacacacgccgatgctctctacctcggcagtcgacttccctcaggtacctccggcgatgccatgtgtcctcttcaaatctccacacccctcaatccttccctcgccaccgttgcagtgtgccgacgtgaacctgcagacgccgcctccacccatgccacgacaggacaggcacaggagttcaagactagcccagcaaccaacggtcggcctgccgtcggggttgaaggcacagctgaacctgtgccgccgaatggggttgacgccggaggaaggaactctcaccgacaaagtagtggctgacttcaaagccatgttcaacgcaccactgccgcaagacaccatcgatgccctcgagcagctgttcggtctgaatagggaggatgcaaaggcggcggacgcggtgctcgcgaagtacctGgggccgacggacgcctgctatagggaggaactggcggcggcgacatga
More
|
|||||||
| Protein seq | MADGVSTTGIVIGVERTMMDAVMTGMCGATLTDAGNAGEDTTMTTPAPVTALGGGEMMMTMRSAAMAVTLRKDAAGCGSLMFTSDGSARVRQELVTVAAMIGVMGAVDRTTSARSLAISGVATATTTSLLALPWRGNSSHQDRSPLCLCSVGSGMKPGPLVGELQSRGEGLLAHTRGHLSGLCGRGPMPARPGGWVAIAIDKLSAPATIVAPGGVVTPFAAASPVAPTDTLALDDPANAEQAEPARQAAANDPVDDLQATLGPTVQPEAAIHTPMLSTSAVDFPQVPPAMPCVLFKSPHPSILPSPPLQCADVNLQTPPPPMPRQDRHRSSRLAQQPTVGLPSGLKAQLNLCRRMGLTPEEGTLTDKVVADFKAMFNAPLPQDTIDALEQLFGLNREDAKAADAVLAKYLGPTDACYREELAAAT
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g45560 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0025580 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0025390 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0025580 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0025170 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0025650 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0025140 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0414900 | RBH | 0.005073 | 0.0032515 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G025310 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
