Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_06g0023980 | OGI:06073440 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr06:27104894-27108391 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gcgattgcaagtttgcaatgcaagggttgtaacaatcacattacaaatcagaggcaacagattacaagatcactactagatcagcactccatcagctaaggtcttttttctctctcgcgaggttaatcacagggatcaaaattagtgacacaaatctacaaactcctaacacacaaagatctcgtcctcttttttccttcttttttgggggtggttgttgttgtttggaccatccagcctccttgataattgtcgtcattggcattcaattcactggatcaaggaatggcagcggcggcggcggtggtggtggtggttgaggcagatgaagacgaacaaggtattcgatcgaggaccagcacggcgtccctcatggcgggcctcttgccgggcgccatggcgcagcaggcgaaggcgagcttgaagcaggcgagcagggcgtcctccctgccgtcggcctcgccgcggagcgtcgggtcggccatgcggagcagccggctccgctcctcgacgacgaacccggcgtgccactggcagagctccacctccgagtagaccctcccggagaggagctccaggagcaccatgccgaaggagtagacgtcccacttggtgttcggcctgaggttcttgaggcactccggcgcctggtacggcggcggcgcggccgcggccgacgtcaccgcagacgacgacccgcatgggctggcgccggcgccgggcatctgggacaggtcgggcaggctgctcgtcgagtgcatcgagcgcttgctcccgaacagcctcgccgacgcgcccgtgctccggtgcacggcctcgccggagagcagccggtccaggccgaagtcgccgatccacggctccatgtcggcgccgagaaggatgttgctcggcttcacgttgccgtgcacccccttcttctcgtggatgaacgccagcccgcgcgccacgccgcgcgcgatccgcagccgcgcctccaagctcagctgcagcggcgacgacgccccgaaccgccctgcaaatcgcccatcatctttccattaaaatttctaatctctacacctcagtttttgcttagtttgcaagtgaatttagtgcttataaagttggtctactgttcctgcataatcaatgccaaatttcgagctatctatcattaccatttgccagtacgattaagctctcaagtacagcactgtaactaaagcttaaaggtgacattataccgttggaaccagtttgatcttgcttaacactgtcacccgtacgctatctgctcaaatcaaatccagctacggatacatgactacgagtacaactaattgaccaaaaattgcaatgtttcgcagataatgaaatggaaattttaagcgaaattggaagcgtttgcttactgctgaaggcgatgttggcgaggctgccattggtggcgtagtcatggatgaggagcttctcgtcggcgccccagtagaagccgcggaggcggaggatgttcgggtggcggaagcgcgccacggcgcggacctgcgcctcgaagtccttgagcttgtcggcgccgccgctctcgccgatgcggcggacggcgagcgccgtgccgtcggcgagcacggccttgtacacgatgctcgacccggtggcgccgaggatgtaggccgacgccttcagcagcgtctccatctccagctcgccgtcgccgtcgacggtgaccagcgtcgccggcgccggcggcgccgccgccgcctgatgatgagggtggtcgtgcttcttgctgtgatgctgcggcgtgctccggccgatgaagctcatgctccgcttcttgaggtcgccgtcgtcgtcgtcgtcggaggtctccgcccccgacgacgccgagcagtcggagctctcgtccgagctgtcgttcttgcggccaatgcagcagcctgtggacgtcgacgccttctcttctctggctccggcgatgtcgagcgtcttgacgtcgccgattgctcggttgctcttgtgctgcagcggcgaatcctgctgctgctgatgatgatggtgccgccgctgccgcctcttcttcctgatgtggtagatgtacaggaacagcatgaagaggagcccgacgccggcgaggtcgccggcgacgatggcgaggatcgccgcggggcggagcttctcctgcccgcgcggcgcctgcgcctgggctcccggagatgggcgggtcgggttcttggggatggccgcgaacgccggcggcgagtcggtggcgttcggcgggttcgacagcgacgacgggatcgagcacatcttcttcagcggcggcccgcacagctccgggttgccctcgtacgccgccgccggctgcacggcgaacgggccggcctgcggcaccgtgccggtgaagttgttgtgcgacagatcgaccgtcgagttcgccggcacgacggcggacaactcggtgggtagcgcgccggtgagcttgttcgacgagatgttcaggaatcgtagccggctcccgccgaagtcggacgggagggagccattgaagtagttggcgctcaagtcgacgacctccaaggcggcgagcccgccgatggggagctcgccggcgaggtagttgttggcgaggccaagcacggcgaggctcgggagcctgcagagagcgggcggaaggcgcccggcgagcgcgttgttcgacaggttgagctcctggaggctgcgcgagtagggcacggagccgccgtcggggagcacgccggagatgtcattgtcggcgagcgagagcacccggagctcggtcgcgttgagcagcgtcggcggcaagctgccgttgaggctgttcccggagaggtcgaggtggcggaggtgctcgacgcggcccagctcgggcggcagcgacccggacagctgcgcgttgggcagcacgaggctgatgacccgcgacaccgtcgccgccgccgccagcgacgcgttgacgccgagcccggccgccgccgccgccgtgccgttcgacggcacggggacagcggcgctcgagttgcccccctccgccgccgccaccccggtgacattggtcgtccacgccgccgcggcgtcggcctgcgggaagccgttgcagacgacgccgttccacgcgcacggcgactcgtcggcgtacccccacccggcgagcgcgccgagcgggtcggcggtgaccgcgtacttgaacgacagcagcagcaccccgtccgcgttcagcccgcacgcgccacggcacatcaccaccaaaacccaaaacaccaccacccacctcccctccatcgccgccgccgccgctgttacctctactcagccgtcgtcgccggcgacatgaaggaaccgaggcgagttgacaatggagagggaggagatggagaggagcagggtgaggttggcaatggcgatggcaatggcatgtgcgggggaataaagaagggggagggcagggtgggtggtggtggcgttgaggatgagacgagacgacgaggggagggccgt
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| CDS seq | atggaggggaggtgggtggtggtgttttgggttttggtggtgatgtgccgtggcgcgtgcgggctgaacgcggacggggtgctgctgctgtcgttcaagtacgcggtcaccgccgacccgctcggcgcgctcgccgggtgggggtacgccgacgagtcgccgtgcgcgtggaacggcgtcgtctgcaacggcttcccgcaggccgacgccgcggcggcgtggacgaccaatgtcaccggggtggcggcggcggaggggggcaactcgagcgccgctgtccccgtgccgtcgaacggcacggcggcggcggcggccgggctcggcgtcaacgcgtcgctggcggcggcggcgacggtgtcgcgggtcatcagcctcgtgctgcccaacgcgcagctgtccgggtcgctgccgcccgagctgggccgcgtcgagcacctccgccacctcgacctctccgggaacagcctcaacggcagcttgccgccgacgctgctcaacgcgaccgagctccgggtgctctcgctcgccgacaatgacatctccggcgtgctccccgacggcggctccgtgccctactcgcgcagcctccaggagctcaacctgtcgaacaacgcgctcgccgggcgccttccgcccgctctctgcaggctcccgagcctcgccgtgcttggcctcgccaacaactacctcgccggcgagctccccatcggcgggctcgccgccttggaggtcgtcgacttgagcgccaactacttcaatggctccctcccgtccgacttcggcgggagccggctacgattcctgaacatctcgtcgaacaagctcaccggcgcgctacccaccgagttgtccgccgtcgtgccggcgaactcgacggtcgatctgtcgcacaacaacttcaccggcacggtgccgcaggccggcccgttcgccgtgcagccggcggcggcgtacgagggcaacccggagctgtgcgggccgccgctgaagaagatgtgctcgatcccgtcgtcgctgtcgaacccgccgaacgccaccgactcgccgccggcgttcgcggccatccccaagaacccgacccgcccatctccgggagcccaggcgcaggcgccgcgcgggcaggagaagctccgccccgcggcgatcctcgccatcgtcgccggcgacctcgccggcgtcgggctcctcttcatgctgttcctgtacatctaccacatcaggaagaagaggcggcagcggcggcaccatcatcatcagcagcagcaggattcgccgctgcagcacaagagcaaccgagcaatcggcgacgtcaagacgctcgacatcgccggagccagagaagagaaggcgtcgacgtccacaggctgctgcattggccgcaagaacgacagctcggacgagagctccgactgctcggcgtcgccgaacaccaagtgggacgtctactccttcggcatggtgctcctggagctcctctccgggagggtctactcggaggtggagctctgccagtggcacgccgggttcgtcgtcgaggagcggagccggctgctccgcatggccgacccgacgctccgcggcgaggccgacggcagggaggacgccctgctcgcctgcttcaagctcgccttcgcctgctgcgccatggcgcccggcaagaggcccgccatgagggacgccgtgctggtcctcgatcgaataccttgttcgtcttcatctgcctcaaccaccaccaccaccgccgccgccgctgccattccttga
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| Protein seq | MEGRWVVVFWVLVVMCRGACGLNADGVLLLSFKYAVTADPLGALAGWGYADESPCAWNGVVCNGFPQADAAAAWTTNVTGVAAAEGGNSSAAVPVPSNGTAAAAAGLGVNASLAAAATVSRVISLVLPNAQLSGSLPPELGRVEHLRHLDLSGNSLNGSLPPTLLNATELRVLSLADNDISGVLPDGGSVPYSRSLQELNLSNNALAGRLPPALCRLPSLAVLGLANNYLAGELPIGGLAALEVVDLSANYFNGSLPSDFGGSRLRFLNISSNKLTGALPTELSAVVPANSTVDLSHNNFTGTVPQAGPFAVQPAAAYEGNPELCGPPLKKMCSIPSSLSNPPNATDSPPAFAAIPKNPTRPSPGAQAQAPRGQEKLRPAAILAIVAGDLAGVGLLFMLFLYIYHIRKKRRQRRHHHHQQQQDSPLQHKSNRAIGDVKTLDIAGAREEKASTSTGCCIGRKNDSSDESSDCSASPNTKWDVYSFGMVLLELLSGRVYSEVELCQWHAGFVVEERSRLLRMADPTLRGEADGREDALLACFKLAFACCAMAPGKRPAMRDAVLVLDRIPCSSSSASTTTTTAAAAAIP |
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| Function | Receptor protein kinase-like protein At4g34220 [UniProtKB/Swiss-Prot:Q94C77] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_06g0023980 | OsLiXu_06g0023980.01 | Chr06 | 27105172 | 27108175 | - | NAM | ||
| CDS seq | atggaggggaggtgggtggtggtgttttgggttttggtggtgatgtgccgtggcgcgtgcgggctgaacgcggacggggtgctgctgctgtcgttcaagtacgcggtcaccgccgacccgctcggcgcgctcgccgggtgggggtacgccgacgagtcgccgtgcgcgtggaacggcgtcgtctgcaacggcttcccgcaggccgacgccgcggcggcgtggacgaccaatgtcaccggggtggcggcggcggaggggggcaactcgagcgccgctgtccccgtgccgtcgaacggcacggcggcggcggcggccgggctcggcgtcaacgcgtcgctggcggcggcggcgacggtgtcgcgggtcatcagcctcgtgctgcccaacgcgcagctgtccgggtcgctgccgcccgagctgggccgcgtcgagcacctccgccacctcgacctctccgggaacagcctcaacggcagcttgccgccgacgctgctcaacgcgaccgagctccgggtgctctcgctcgccgacaatgacatctccggcgtgctccccgacggcggctccgtgccctactcgcgcagcctccaggagctcaacctgtcgaacaacgcgctcgccgggcgccttccgcccgctctctgcaggctcccgagcctcgccgtgcttggcctcgccaacaactacctcgccggcgagctccccatcggcgggctcgccgccttggaggtcgtcgacttgagcgccaactacttcaatggctccctcccgtccgacttcggcgggagccggctacgattcctgaacatctcgtcgaacaagctcaccggcgcgctacccaccgagttgtccgccgtcgtgccggcgaactcgacggtcgatctgtcgcacaacaacttcaccggcacggtgccgcaggccggcccgttcgccgtgcagccggcggcggcgtacgagggcaacccggagctgtgcgggccgccgctgaagaagatgtgctcgatcccgtcgtcgctgtcgaacccgccgaacgccaccgactcgccgccggcgttcgcggccatccccaagaacccgacccgcccatctccgggagcccaggcgcaggcgccgcgcgggcaggagaagctccgccccgcggcgatcctcgccatcgtcgccggcgacctcgccggcgtcgggctcctcttcatgctgttcctgtacatctaccacatcaggaagaagaggcggcagcggcggcaccatcatcatcagcagcagcaggattcgccgctgcagcacaagagcaaccgagcaatcggcgacgtcaagacgctcgacatcgccggagccagagaagagaaggcgtcgacgtccacaggctgctgcattggccgcaagaacgacagctcggacgagagctccgactgctcggcgtcgccgaacaccaagtgggacgtctactccttcggcatggtgctcctggagctcctctccgggagggtctactcggaggtggagctctgccagtggcacgccgggttcgtcgtcgaggagcggagccggctgctccgcatggccgacccgacgctccgcggcgaggccgacggcagggaggacgccctgctcgcctgcttcaagctcgccttcgcctgctgcgccatggcgcccggcaagaggcccgccatgagggacgccgtgctggtcctcgatcgaataccttgttcgtcttcatctgcctcaaccaccaccaccaccgccgccgccgctgccattccttga
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| Protein seq | MEGRWVVVFWVLVVMCRGACGLNADGVLLLSFKYAVTADPLGALAGWGYADESPCAWNGVVCNGFPQADAAAAWTTNVTGVAAAEGGNSSAAVPVPSNGTAAAAAGLGVNASLAAAATVSRVISLVLPNAQLSGSLPPELGRVEHLRHLDLSGNSLNGSLPPTLLNATELRVLSLADNDISGVLPDGGSVPYSRSLQELNLSNNALAGRLPPALCRLPSLAVLGLANNYLAGELPIGGLAALEVVDLSANYFNGSLPSDFGGSRLRFLNISSNKLTGALPTELSAVVPANSTVDLSHNNFTGTVPQAGPFAVQPAAAYEGNPELCGPPLKKMCSIPSSLSNPPNATDSPPAFAAIPKNPTRPSPGAQAQAPRGQEKLRPAAILAIVAGDLAGVGLLFMLFLYIYHIRKKRRQRRHHHHQQQQDSPLQHKSNRAIGDVKTLDIAGAREEKASTSTGCCIGRKNDSSDESSDCSASPNTKWDVYSFGMVLLELLSGRVYSEVELCQWHAGFVVEERSRLLRMADPTLRGEADGREDALLACFKLAFACCAMAPGKRPAMRDAVLVLDRIPCSSSSASTTTTTAAAAAIP
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_06g0023980 | OsLiXu_06g0023980.02 | Chr06 | 27104894 | 27108391 | - | IsoSeq | ||
| CDS seq | ggccctcccctcgtcgtctcgtctcatcctcaacgccaccaccacccaccctgccctcccccttctttattcccccgcacatgccattgccatcgccattgccaacctcaccctgctcctctccatctcctccctctccattgtcaactcgcctcggttccttcatgtcgccggcgacgacggctgagtagaggtaacagcggcggcggcggcgatggaggggaggtgggtggtggtgttttgggttttggtggtgatgtgccgtggcgcgtgcgggctgaacgcggacggggtgctgctgctgtcgttcaagtacgcggtcaccgccgacccgctcggcgcgctcgccgggtgggggtacgccgacgagtcgccgtgcgcgtggaacggcgtcgtctgcaacggcttcccgcaggccgacgccgcggcggcgtggacgaccaatgtcaccggggtggcggcggcggaggggggcaactcgagcgccgctgtccccgtgccgtcgaacggcacggcggcggcggcggccgggctcggcgtcaacgcgtcgctggcggcggcggcgacggtgtcgcgggtcatcagcctcgtgctgcccaacgcgcagctgtccgggtcgctgccgcccgagctgggccgcgtcgagcacctccgccacctcgacctctccgggaacagcctcaacggcagcttgccgccgacgctgctcaacgcgaccgagctccgggtgctctcgctcgccga
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| Protein seq | GPPLVVSSHPQRHHHPPCPPPSLFPRTCHCHRHCQPHPAPLHLLPLHCQLASVPSCRRRRRLSRGNSGGGGDGGEVGGGVLGFGGDVPWRVRAERGRGAAAVVQVRGHRRPARRARRVGVRRRVAVRVERRRLQRLPAGRRRGGVDDQCHRGGGGGGGQLERRCPRAVERHGGGGGRARRQRVAGGGGDGVAGHQPRAAQRAAVRVAAARAGPRRAPPPPRPLREQPQRQLAADAAQRDRAPGALARR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.059098 | 0.828283 | 0.473402 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0638500 | RBH | 0.0 | 0.0 | 4.756850 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g43170 | RBH | 0.0 | 0.0 | 0.613467 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0638500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0023780 | RBH | 0.0 | 8.228919 | 1.519095 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0023590 | RBH | 0.040705 | 3.320616 | 0.760447 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0023710 | RBH | 0.0 | 5.494693 | 2.022397 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0023320 | RBH | 0.0 | 0.318653 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0023780 | RBH | 0.330339 | 10.900167 | 1.182263 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0407600 | RBH | 6.2628925 | 9.9463145 | 13.7040085 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0023260 | RBH | 0.0 | 0.649275 | 0.188660 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0389200 | RBH | 8.002472 | 3.72513 | 20.6825115 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_Ung0005040 | RBH | 0.000000 | 0.077241 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0023630 | RBH | 0.0 | 11.142919 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0023320 | RBH | 0.0 | 12.938082 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0007010 | SBH | 0.0 | 1.599617 | 0.373832 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0023580 | RBH | 0.000000 | 4.186255 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G023370 | RBH | 0.0 | 2.819760 | 2.575768 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0023580 | RBH | 0.0 | 22.562811 | 3.534897 |
