Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_06g0023890 | OGI:06073160 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr06:27022618-27024757 | ||||||||
| Gene Symbol | HT1 | ||||||||||
| DNA seq | agtacgtacgtgtcggcgtggatataccttgctttgcatcgaggaggaggtgtttggttgattccggcgtggtgagcaatgcgcgtggcgcggcggcgagtggtcgccggcgtgtcgctgcgccgccgacgtccgccggccaccggcatgctgtgcgagtcttgatcggtgtcggtcgagagagagggggtagcttgtagctctcatgctttcttgcttccggctgccgcggccgccgggcggggagacgaaccaggcggcggcggcgtcggcgtcgccgaggcggccgtcgctgccgttcgcgtcgagcctgttcgcggggtcgccgtcgacgtcggggaagcagccgtggccggcggacgcggacgacatggagaagaagcggtgggacagcatggagtcgtggtcgatgctgctggacacggccatggggccctccggcgagcCGAcgtcgagccgcgacagcgggcggcgggaggagtggatggccgacctctcccacctcttcatcggcaacaagttcgcctccggcgccaacagccgcatctaccgcggcatctacaagcagcgcgccgtcgccgtcaagatggtccgcatccccgagcgcgacgaggcccgccgcgccgtcctcgaggaccagttcaactccgaggtcgccttcctctcccgcctctaccaccccaacatcgtccaggtcagctttcttttcccttacacccgccaagtgttcgtccggtggcgagctttcttttgccttacaccacgcccgccaagcgttcgtccggtggtggcgagctctcttttgccttacaccacacccgctaagtgttcgaccggtggcgagcagttcatcgcggcgtgcaagaagccgccggtgtactgcatcatcacggagtacatgtcgcaggggacgctgaggatgtacctgaacaagaaggacccatactcgctgtcgtcggagacgatactgaagctggcgctggacatctcgcgggggatggagtacctgcacgcgcagggggtgatccaccgggacctcaagtcgcagaacctcctcctcaacgacgagatgcgcgtcaaggtcgccgacttcggcacgtcctgcctggagacggcgtgccaggccaccaagggcaacaagggcacctaccgatggatggcgccggagatgaccaaggagaagccctacaCccgcaaggtcgacgtctacagcttcggcatcgtcctctgggagctcaccacctgcctcctccccttccagggcatgacccccgtccaagccgcctacgccgcctccgagaaggtcatcataaaaaattttaccatctttgagaaataagatttgctccgatccaacaaaaaagtacctccagataccggtacctcatgataccaaatcgtttccgaccgttggatctagctagcaaacgatttagtatcgtgaggtaccgatacttcgaggtactttttgctggaccggagcaaatctcgaaaatgagaaataccaaaatttttagcgtaaaatttggtacctcatagtactaaaggtatcaaattttacattggaaaatgtgatactgttcgaatcacttacttcataatcactatcaacctcttcttggtttcttgctttggttttcatcaggatggattactgaatcatttctttcttgttcatgtgatgtttgtttgtgagcagaatctgcggccgccgttgtcgacctcgtgctctccggtgctgaacaacctgatcaagaggtgctggtcggcgaacccggcgaggcggccggagttcagctacatcgtgtcggtgctggagaagtacgaccactgcgtgaaggaagggatgccgatcatggcgcaccaggagctcaggatctggagctccttcgccaagatcttcaggatgggctgcatcaccaacaacttgtccataccggtgcatgcttgattcgatcaaaatactcaccatacgtatatactggagtagtattaattataaatgtatgttgaattaatctctgattaagataaacacacatgctgatgtaaccttgctactcaagacctctgtttgtgctttgcatgacaagtatctgaagtctgaactgaatggcatgaatgatggaccaaatgtacc
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| CDS seq | atgctttcttgcttccggctgccgcggccgccgggcggggagacgaaccaggcggcggcggcgtcggcgtcgccgaggcggccgtcgctgccgttcgcgtcgagcctgttcgcggggtcgccgtcgacgtcggggaagcagccgtggccggcggacgcggacgacatggagaagaagcggtgggacagcatggagtcgtggtcgatgctgctggacacggccatggggccctccggcgagcCGAcgtcgagccgcgacagcgggcggcgggaggagtggatggccgacctctcccacctcttcatcggcaacaagttcgcctccggcgccaacagccgcatctaccgcggcatctacaagcagcgcgccgtcgccgtcaagatggtccgcatccccgagcgcgacgaggcccgccgcgccgtcctcgaggaccagttcaactccgaggtcgccttcctctcccgcctctaccaccccaacatcgtccaggtcagctttcttttcccttacacccgccaagtgttcgtccggtggcgagctttcttttgccttacaccacgcccgccaagcgttcgtccggtggtggcgagctctcttttgccttacaccacacccgctaagtgttcgaccggtggcgagcagttcatcgcggcgtgcaagaagccgccggtgtactgcatcatcacggagtacatgtcgcaggggacgctgaggatgtacctgaacaagaaggacccatactcgctgtcgtcggagacgatactgaagctggcgctggacatctcgcgggggatggagtacctgcacgcgcagggggtgatccaccgggacctcaagtcgcagaacctcctcctcaacgacgagatgcgcgtcaaggtcgccgacttcggcacgtcctgcctggagacggcgtgccaggccaccaagggcaacaagggcacctaccgatggatggcgccggagatgaccaaggagaagccctacaCccgcaaggtcgacgtctacagcttcggcatcaatctgcggccgccgttgtcgacctcgtgctctccggtgctgaacaacctgatcaagaggtgctggtcggcgaacccggcgaggcggccggagttcagctacatcgtgtcggtgctggagaagtacgaccactgcgtgaaggaagggatgccgatcatggcgcaccaggagctcaggatctggagctccttcgccaagatcttcaggatgggctgcatcaccaacaacttgtccataccggtgcatgcttga
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| Protein seq | MLSCFRLPRPPGGETNQAAAASASPRRPSLPFASSLFAGSPSTSGKQPWPADADDMEKKRWDSMESWSMLLDTAMGPSGEPTSSRDSGRREEWMADLSHLFIGNKFASGANSRIYRGIYKQRAVAVKMVRIPERDEARRAVLEDQFNSEVAFLSRLYHPNIVQVSFLFPYTRQVFVRWRAFFCLTPRPPSVRPVVASSLLPYTTPAKCSTGGEQFIAACKKPPVYCIITEYMSQGTLRMYLNKKDPYSLSSETILKLALDISRGMEYLHAQGVIHRDLKSQNLLLNDEMRVKVADFGTSCLETACQATKGNKGTYRWMAPEMTKEKPYTRKVDVYSFGINLRPPLSTSCSPVLNNLIKRCWSANPARRPEFSYIVSVLEKYDHCVKEGMPIMAHQELRIWSSFAKIFRMGCITNNLSIPVHA |
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| Function | Serine/threonine/tyrosine-protein kinase HT1 [UniProtKB/Swiss-Prot:Q2MHE4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_06g0023890 | OsLiXu_06g0023890.01 | Chr06 | 27022823 | 27024568 | + | NAM | ||
| CDS seq | atgctttcttgcttccggctgccgcggccgccgggcggggagacgaaccaggcggcggcggcgtcggcgtcgccgaggcggccgtcgctgccgttcgcgtcgagcctgttcgcggggtcgccgtcgacgtcggggaagcagccgtggccggcggacgcggacgacatggagaagaagcggtgggacagcatggagtcgtggtcgatgctgctggacacggccatggggccctccggcgagcCGAcgtcgagccgcgacagcgggcggcgggaggagtggatggccgacctctcccacctcttcatcggcaacaagttcgcctccggcgccaacagccgcatctaccgcggcatctacaagcagcgcgccgtcgccgtcaagatggtccgcatccccgagcgcgacgaggcccgccgcgccgtcctcgaggaccagttcaactccgaggtcgccttcctctcccgcctctaccaccccaacatcgtccaggtcagctttcttttcccttacacccgccaagtgttcgtccggtggcgagctttcttttgccttacaccacgcccgccaagcgttcgtccggtggtggcgagctctcttttgccttacaccacacccgctaagtgttcgaccggtggcgagcagttcatcgcggcgtgcaagaagccgccggtgtactgcatcatcacggagtacatgtcgcaggggacgctgaggatgtacctgaacaagaaggacccatactcgctgtcgtcggagacgatactgaagctggcgctggacatctcgcgggggatggagtacctgcacgcgcagggggtgatccaccgggacctcaagtcgcagaacctcctcctcaacgacgagatgcgcgtcaaggtcgccgacttcggcacgtcctgcctggagacggcgtgccaggccaccaagggcaacaagggcacctaccgatggatggcgccggagatgaccaaggagaagccctacaCccgcaaggtcgacgtctacagcttcggcatcaatctgcggccgccgttgtcgacctcgtgctctccggtgctgaacaacctgatcaagaggtgctggtcggcgaacccggcgaggcggccggagttcagctacatcgtgtcggtgctggagaagtacgaccactgcgtgaaggaagggatgccgatcatggcgcaccaggagctcaggatctggagctccttcgccaagatcttcaggatgggctgcatcaccaacaacttgtccataccggtgcatgcttga
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| Protein seq | MLSCFRLPRPPGGETNQAAAASASPRRPSLPFASSLFAGSPSTSGKQPWPADADDMEKKRWDSMESWSMLLDTAMGPSGEPTSSRDSGRREEWMADLSHLFIGNKFASGANSRIYRGIYKQRAVAVKMVRIPERDEARRAVLEDQFNSEVAFLSRLYHPNIVQVSFLFPYTRQVFVRWRAFFCLTPRPPSVRPVVASSLLPYTTPAKCSTGGEQFIAACKKPPVYCIITEYMSQGTLRMYLNKKDPYSLSSETILKLALDISRGMEYLHAQGVIHRDLKSQNLLLNDEMRVKVADFGTSCLETACQATKGNKGTYRWMAPEMTKEKPYTRKVDVYSFGINLRPPLSTSCSPVLNNLIKRCWSANPARRPEFSYIVSVLEKYDHCVKEGMPIMAHQELRIWSSFAKIFRMGCITNNLSIPVHA
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_06g0023890 | OsLiXu_06g0023890.02 | Chr06 | 27022618 | 27024757 | + | IsoSeq | ||
| CDS seq | atggatggcgccggagatgaccaaggagaagccctacaCccgcaaggtcgacgtctacagcttcggcatcgtcctctgggagctcaccacctgcctcctccccttccagggcatgacccccgtccaagccgcctacgccgcctccgagaagaatctgcggccgccgttgtcgacctcgtgctctccggtgctgaacaacctgatcaagaggtgctggtcggcgaacccggcgaggcggccggagttcagctacatcgtgtcggtgctggagaagtacgaccactgcgtgaaggaagggatgccgatcatggcgcaccaggagctcaggatctggagctccttcgccaagatcttcaggatgggctgcatcaccaacaacttgtccataccggtgcatgcttgattcgatcaaaatactcaccatacgtatatactggagtagtattaattataaatgta
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| Protein seq | MDGAGDDQGEALHPQGRRLQLRHRPLGAHHLPPPLPGHDPRPSRLRRLREESAAAVVDLVLSGAEQPDQEVLVGEPGEAAGVQLHRVGAGEVRPLREGRDADHGAPGAQDLELLRQDLQDGLHHQQLVHTGACLIRSKYSPYVYTGVVLIINV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr06 | 27023839 | 27024317 | + | OsLiXu_06g0023890.02 | OsLiXu_06g0023890.02,OsLiXu_06g0023890.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.241884 | 0.0 | 0.391443 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0636600 | RBH | 0.250533 | 0.0 | 0.305151 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g43030 | RBH | 0.169423 | 0.0 | 0.078552 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0636600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0023690 | RBH | 0.299410 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0023500 | RBH | 0.0 | 0.0 | 0.222248 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0023620 | RBH | 0.0 | 1.175701 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0023230 | RBH | 0.039313 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0023680 | RBH | 0.000000 | 0.0 | 1.480704 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0405800 | RBH | 1.426695 | 0.705099 | 2.995055 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0023160 | RBH | 0.000000 | 0.0 | 0.081565 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0387200 | RBH | 1.8777975 | 0.4890005 | 1.878138 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0023610 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0023540 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0023230 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0006430 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0023490 | RBH | 0.092731 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G023280 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0023490 | RBH | 0.000000 | 0.0 | 0.614435 |
