Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_06g0019230 | OGI:06056990 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr06:21477686-21480415 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atctattaaaccatcgtctcatctcatgattctcatcggtagcagcagcgtagcactattccattcccttcatgctggttagcttctcccccttgttcgatgcctccggatccctaacgcttgcttctcccatgccactccactcccacctcctcctgctcctgctggctctctccacgtcggtggttgctggctctgtctcctcctccccctcggcttgcgccggcggcggtggcggtggcggcgacgcggccatcgtcgcggcggcgttccggggcgtgcgcaacttccagctgcctccatgcggggctgtgcgggagctgcggctcccgtcgcggaacctcacgggcgccgtggcgtgggcggcgctcgccaacctgtcgggcctcgccgtgctcgacctgtccgggaacgcgctccagggcgccatccccggggggttctggcgcgcgccgtcgctccggcacgtcgatgtctccgggaaccagctgggtggggctctccgggtggtggaggctagcccgcggctcgagtcgctcaacgtgtccggcaaccggttcaccggcgtcgctggggcggaggcgctcgccgggctccgcgtcctcgacgtgtcggcgaacaggatccgggcggtgccgcaggggctgaggcggctggcgcgggtgagccggctcgacctgtcgcggaacgcgatgcaggggaggttccccggcgacctcccgccgctcgccgggctccgtttcttgaacgtctcgtacaacaacttctccggcgtggtggacggcggcgccgtcaagaagttcgggcattctgctttcgtccactccggaaacacttcgctggtgttctccgagaactcgacggcgaagcggcctccaccgccgccttcgccgccgccatcgcatccacatagaagtggcggaaagaatgataccgcgacgccggcgaggaggacgcggacgaggagcaggaggaagcatttgagcgtcgtcacggttgcggtggtgtgcggggtggtgtccgtggccatgctgctctgtctcgtcgggtgcgtggcgtgcggggtgctgcgttgccgcaagaacagggggaaggaggcggaggaggagaagaggaaggcgcattggggcgggaaggacgaggaggaggtggtggccgtggcggcggcggcggcgaaggggggttctgctgcgccggtggtgctgttcgagcggccgctgatggagctcacgctggccgacctggccgaggccacgtccgggttcgggcgcgagtcgcagctcgcggagcgcggcggccgcagcggcgccgcgtaccgcgccgtgctcccggcgacatgcacgtcgtcgtccgcgtcgtggacggcgccatggccggcgtcggcgaggacgaagaccccgcgaccgcggcgaccgcgttccgcgacctcgcgcgtctccggcaccccaatattctcccgctccttggctactgcattgcaggtgagaaaatgatattggtttttggatttttcagaaaataaaatttgtgtattttttccaaagattttgcacaatacttggagtaatattttccaatcataatattttgggctaaatataactcgttttcgtttactagtgaagtatttttctaaaaatatgtaaaatatatttatatttttgtttcaatttcctagtgccagtgtgaaaatccttggccagaataaagtttgcaactagggagtagagtaacaccatacatgtagacggcatgtttgacctatcagcgtgtgtgtgtcctatagttggagcagttagattaggtgcacaaatcaacctccaccgaattggtgcagttgaaaatttcttccgcaatctgtactctcactggaacttttgaaattcaaatacattcatttattacagggaaggagaagctcctgctgtacgagtacatggagaaaggcgacctccaccggtggctgcacgagcttccggcggggcggcccgacatggaggacgacaccggcggtgacatctgggaggtggcggaggacaagcggtccatctccgactggccgacccggcaccgcatcgcgctagggatcgcccgagggctcgcgttcctgcaccaagggtgggcagggtcgggtcggccggtcgtgcacggtcatctggtcccaaccaacatcctcctcggcgaagacctagagcctcggatatccgacttcggccaccctagcgacacgacgccagagggggatgtgtacagcttcggcgtgctggtgctcgagctcataaccggccaagccggctgggacgaagcgtcggttagctgggcgcgggggatcatccgcgaccagaagggtctagacatcgtggacccgagagtgcgggacgaggcgggcggcgggccggagacgtcgacggtggagcgggagatggtggagtgcctgcgggtggggtacctctgcaccgcgcagtcgccggagaagaggccgacgatgcagcaggtggtgggggtgctcaaggacatccgggtggcacctgccagcagctcatccacttgacggtggtggagcagcgccatcgtgtgtgtccgtcgcaattgggacccgccgtcgcctgagaagagatcccagtgtggcagcctttcctgatctggtagacaagccttggtggtcggtagtagaaacacatgtgcatgtaacaattttttctcgccggtaaaacagttggtttcagagcc
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| CDS seq | atgctggttagcttctcccccttgttcgatgcctccggatccctaacgcttgcttctcccatgccactccactcccacctcctcctgctcctgctggctctctccacgtcggtggttgctggctctgtctcctcctccccctcggcttgcgccggcggcggtggcggtggcggcgacgcggccatcgtcgcggcggcgttccggggcgtgcgcaacttccagctgcctccatgcggggctgtgcgggagctgcggctcccgtcgcggaacctcacgggcgccgtggcgtgggcggcgctcgccaacctgtcgggcctcgccgtgctcgacctgtccgggaacgcgctccagggcgccatccccggggggttctggcgcgcgccgtcgctccggcacgtcgatgtctccgggaaccagctgggtggggctctccgggtggtggaggctagcccgcggctcgagtcgctcaacgtgtccggcaaccggttcaccggcgtcgctggggcggaggcgctcgccgggctccgcgtcctcgacgtgtcggcgaacaggatccgggcggtgccgcaggggctgaggcggctggcgcgggtgagccggctcgacctgtcgcggaacgcgatgcaggggaggttccccggcgacctcccgccgctcgccgggctccgtttcttgaacgtctcgtacaacaacttctccggcgtggtggacggcggcgccgtcaagaagttcgggcattctgctttcgtccactccggaaacacttcgctggtgttctccgagaactcgacggcgaagcggcctccaccgccgccttcgccgccgccatcgcatccacatagaagtggcggaaagaatgataccgcgacgccggcgaggaggacgcggacgaggagcaggaggaagcatttgagcgtcgtcacggttgcggtggtgtgcggggtggtgtccgtggccatgctgctctgtctcgtcgggtgcgtggcgtgcggggtgctgcgttgccgcaagaacagggggaaggaggcggaggaggagaagaggaaggcgcattggggcgggaaggacgaggaggaggtggtggccgtggcggcggcggcggcgaaggggggttctgctgcgccggtggtgctgttcgagcggccgctgatggagctcacgctggccgacctggccgaggccacgtccgggttcgggcgcgagtcgcagctcgcggagcgcggcggccgcagcggcgccgcgtaccgcgccgtgctcccggcgacatgcacgtcgtcgtccgcgtcgtggacggcgccatggccggcgtcggcgaggacgaagaccccgcgaccgcggcgaccgcgttccgcgacctcgcgcgtctccggcaccccaatattctcccgctccttggctactgcattgcagggaaggagaagctcctgctgtacgagtacatggagaaaggcgacctccaccggtggctgcacgagcttccggcggggcggcccgacatggaggacgacaccggcggtgacatctgggaggtggcggaggacaagcggtccatctccgactggccgacccggcaccgcatcgcgctag
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| Protein seq | MLVSFSPLFDASGSLTLASPMPLHSHLLLLLLALSTSVVAGSVSSSPSACAGGGGGGGDAAIVAAAFRGVRNFQLPPCGAVRELRLPSRNLTGAVAWAALANLSGLAVLDLSGNALQGAIPGGFWRAPSLRHVDVSGNQLGGALRVVEASPRLESLNVSGNRFTGVAGAEALAGLRVLDVSANRIRAVPQGLRRLARVSRLDLSRNAMQGRFPGDLPPLAGLRFLNVSYNNFSGVVDGGAVKKFGHSAFVHSGNTSLVFSENSTAKRPPPPPSPPPSHPHRSGGKNDTATPARRTRTRSRRKHLSVVTVAVVCGVVSVAMLLCLVGCVACGVLRCRKNRGKEAEEEKRKAHWGGKDEEEVVAVAAAAAKGGSAAPVVLFERPLMELTLADLAEATSGFGRESQLAERGGRSGAAYRAVLPATCTSSSASWTAPWPASARTKTPRPRRPRSATSRVSGTPIFSRSLATALQGRRSSCCTSTWRKATSTGGCTSFRRGGPTWRTTPAVTSGRWRRTSGPSPTGRPGTASR |
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| Function | Calmodulin-binding receptor kinase CaMRLK [UniProtKB/Swiss-Prot:Q9FK63] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_06g0019230 | OsLiXu_06g0019230.01 | Chr06 | 21477686 | 21480415 | + | NAM | ||
| CDS seq | atgctggttagcttctcccccttgttcgatgcctccggatccctaacgcttgcttctcccatgccactccactcccacctcctcctgctcctgctggctctctccacgtcggtggttgctggctctgtctcctcctccccctcggcttgcgccggcggcggtggcggtggcggcgacgcggccatcgtcgcggcggcgttccggggcgtgcgcaacttccagctgcctccatgcggggctgtgcgggagctgcggctcccgtcgcggaacctcacgggcgccgtggcgtgggcggcgctcgccaacctgtcgggcctcgccgtgctcgacctgtccgggaacgcgctccagggcgccatccccggggggttctggcgcgcgccgtcgctccggcacgtcgatgtctccgggaaccagctgggtggggctctccgggtggtggaggctagcccgcggctcgagtcgctcaacgtgtccggcaaccggttcaccggcgtcgctggggcggaggcgctcgccgggctccgcgtcctcgacgtgtcggcgaacaggatccgggcggtgccgcaggggctgaggcggctggcgcgggtgagccggctcgacctgtcgcggaacgcgatgcaggggaggttccccggcgacctcccgccgctcgccgggctccgtttcttgaacgtctcgtacaacaacttctccggcgtggtggacggcggcgccgtcaagaagttcgggcattctgctttcgtccactccggaaacacttcgctggtgttctccgagaactcgacggcgaagcggcctccaccgccgccttcgccgccgccatcgcatccacatagaagtggcggaaagaatgataccgcgacgccggcgaggaggacgcggacgaggagcaggaggaagcatttgagcgtcgtcacggttgcggtggtgtgcggggtggtgtccgtggccatgctgctctgtctcgtcgggtgcgtggcgtgcggggtgctgcgttgccgcaagaacagggggaaggaggcggaggaggagaagaggaaggcgcattggggcgggaaggacgaggaggaggtggtggccgtggcggcggcggcggcgaaggggggttctgctgcgccggtggtgctgttcgagcggccgctgatggagctcacgctggccgacctggccgaggccacgtccgggttcgggcgcgagtcgcagctcgcggagcgcggcggccgcagcggcgccgcgtaccgcgccgtgctcccggcgacatgcacgtcgtcgtccgcgtcgtggacggcgccatggccggcgtcggcgaggacgaagaccccgcgaccgcggcgaccgcgttccgcgacctcgcgcgtctccggcaccccaatattctcccgctccttggctactgcattgcagggaaggagaagctcctgctgtacgagtacatggagaaaggcgacctccaccggtggctgcacgagcttccggcggggcggcccgacatggaggacgacaccggcggtgacatctgggaggtggcggaggacaagcggtccatctccgactggccgacccggcaccgcatcgcgctag
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| Protein seq | MLVSFSPLFDASGSLTLASPMPLHSHLLLLLLALSTSVVAGSVSSSPSACAGGGGGGGDAAIVAAAFRGVRNFQLPPCGAVRELRLPSRNLTGAVAWAALANLSGLAVLDLSGNALQGAIPGGFWRAPSLRHVDVSGNQLGGALRVVEASPRLESLNVSGNRFTGVAGAEALAGLRVLDVSANRIRAVPQGLRRLARVSRLDLSRNAMQGRFPGDLPPLAGLRFLNVSYNNFSGVVDGGAVKKFGHSAFVHSGNTSLVFSENSTAKRPPPPPSPPPSHPHRSGGKNDTATPARRTRTRSRRKHLSVVTVAVVCGVVSVAMLLCLVGCVACGVLRCRKNRGKEAEEEKRKAHWGGKDEEEVVAVAAAAAKGGSAAPVVLFERPLMELTLADLAEATSGFGRESQLAERGGRSGAAYRAVLPATCTSSSASWTAPWPASARTKTPRPRRPRSATSRVSGTPIFSRSLATALQGRRSSCCTSTWRKATSTGGCTSFRRGGPTWRTTPAVTSGRWRRTSGPSPTGRPGTASR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0544100 | RBH | 0.0 | 0.326861 | 0.259669 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g35200 | RBH | 0.0 | 0.207900 | 0.063213 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0544100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0018850 | RBH | 0.078179 | 1.079892 | 0.428502 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0018680 | RBH | 0.0 | 1.055094 | 0.130858 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0018750 | RBH | 0.173098 | 0.916346 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0018640 | RBH | 0.018883 | 0.070565 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0018990 | RBH | 0.0 | 4.243730 | 0.929516 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0323000 | RBH | 1.232202 | 1.879501 | 1.2376425 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0018480 | RBH | 0.0 | 0.505140 | 0.101143 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0298200 | RBH | 1.879062 | 2.5793595 | 5.5449775 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0018910 | RBH | 0.0 | 0.050004 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0018840 | RBH | 0.052888 | 1.241697 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0018490 | RBH | 0.000000 | 9.026404 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0009770 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0018690 | RBH | 0.0 | 3.406240 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G018600 | RBH | 0.0 | 1.139198 | 0.144480 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0018750 | RBH | 0.0 | 6.488292 | 0.0 |
