Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_06g0015990 | OGI:06043700 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr06:16218501-16220899 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | cttattccagttgaggagagaaatcgagaatcatgccttcccacggcgcccgacgacggtcgctgcctttcttcccatcctcctctcctctcgatctccctcttgccacccatacgccgcctgctcatggagcctgtagctagccgccgccttcccctcgggctcgccaagctgtagccgctgctttcctctcaagctcgctggaccagccgctgccgccaccgccgtgcggagccagtggttaccatcgtcgtcttcccatcaagcaagcggcgactgccgccgccttcttgcgagttcgatgtccactgctgccgccatttcatctccttccccatcccacgcggacttggttctgcaagatctgtgccgcatcgagcacccacaagcacgcggtaaccaaaaggtgaagctcgacgtgggtggcagcagccaagtctcctcctactgatacgactcctcAaattgatttctcagttctctttatagtcatccgtctcatgctctctacatcaagcttgcattactggtggcagcctctgcttgatttttctgtagtgcatggtcaatcagatctgaagatatgatgttacaaatgctttacctgcattatgcttctgaaatttcactactagaaggccatattccgttgattcagaaatttttttttgatgtgcaggcctggagctatttttggaagcacaaacgtaaggatcacatatgtacgttactaccttttcctgcaaatacatatacaccacttggatgtacataccaattctgccttgctttacatgttaattaacttgattgagcaaatgtttgctgcattgatcggccggtgcctcaaagtacaatgagtaagtgactgaaggtaattcattagccttttatgtctatatatgaccataaaaatgtatgcagggtgcatcagtcaagcaaaaagtatatggcaatggcacaTttcttagggaagggatttatgagttcaatgtcaaaatcctctctatcagttgcttatgtagctaaaaatagggaagcAatatatttatattcacaggatactctatgagttcaacatcaaagttatttatagtcacatgtttcttatattctaaatccatatgttgttgatatgtgttctccaattgatctgaatgcagattatcctatcataacattaacaacgttggaccatacttttggtgggtgctgcatgcagttattattatcaaagccatgaaaggtattttacattgttacatcttcttcacctttataggtttctaatagtgttcttgcttctttgactagcttcgtttgttaattcctatgtccttcatatttcaggttcaaggcttccagctgcttggcaattgctcttcaggatttctctacctattaactgttattgcctggtattatttcagTttttttggtagttccttgggaaatcttatttgttgttcaatcgTtatatccctatgcatgatcattatttagttgtcttgataaatgaccttccatactctattttttatcatatgaattggtattgggttaaactatagcatatatttttgcatgaggcaatatttatatttagcagcatctcactgaccactttcatccattttcgttttcaggcatgggcgcatagaagagaccacaatatgaggcaaacattggaccatagctaacataactgaatatgtgatgccactttcactgatgcttctatgaccaccagtgcgggtaatttcaactttctcatgctgttatatactgatgctatattactcagcatgctttaggaaattacgaactgtttcattatgttgaaattacgtgttgttatttgtaacagtgtgggatatgcatgctcttcattactgtatatggtatgctcttcatgaaggtaaaaccgtggatctattttccttttattattggtggctataaaatagattgatgctaattaatgacaagctggcgaaaatactgaactctcatatctccagaattggctataaaatcgccagttctaggtcatggggtcatggaacagtaaaccttaatttctatttgtttttgctaatggccaatttgtatagattgtaaaacatacacaatatgagttgccactgtggttagggttgcgatctgcggttagggtttgggtatggaatggagcaagtgtgctggccaatgtgcatgacaaagtcagctccactaaccaatgtctttagatatggttctactctgtgatctcccccatcatctccgtcatggattaggtctaagcttgatttaggtgtgtggctgtccagccatctgcgctcctccgatggcatgttgctggatatgcagtcatctccagtttggtcattctctgctga
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| CDS seq | atgtccactgctgccgccatttcatctccttccccatcccacgcggacttggttctgcaagatctgtgccgcatcgagcacccacaagcacgcggtaaccaaaaggcctggagctatttttggaagcacaaacgtaaggatcacatatgtacattatcctatcataacattaacaacgttggaccatacttttggtgggtgctgcatgcagttattattatcaaagccatgaaaggttcaaggcttccagctgcttggcaattgctcttcaggatttctctacctattaactgttattgcctgtgtgggatatgcatgctcttcattactgtatatggtatgctcttcatgaagccatctgcgctcctccgatggcatgttgctggatatgcagtcatctccagtttggtcattctctgctga
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| Protein seq | MSTAAAISSPSPSHADLVLQDLCRIEHPQARGNQKAWSYFWKHKRKDHICTLSYHNINNVGPYFWWVLHAVIIIKAMKGSRLPAAWQLLFRISLPINCYCLCGICMLFITVYGMLFMKPSALLRWHVAGYAVISSLVILC |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_06g0015990 | OsLiXu_06g0015990.01 | Chr06 | 16218501 | 16219624 | + | NAM | ||
| CDS seq | atgtccactgctgccgccatttcatctccttccccatcccacgcggacttggttctgcaagatctgtgccgcatcgagcacccacaagcacgcggtaaccaaaaggcctggagctatttttggaagcacaaacgtaaggatcacatatgtacgttactaccttttcctgcaaatacatatacaccacttggatgtacataccaattctgccttgctttacatgttaattaa
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| Protein seq | MSTAAAISSPSPSHADLVLQDLCRIEHPQARGNQKAWSYFWKHKRKDHICTLLPFPANTYTPLGCTYQFCLALHVN |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_06g0015990 | OsLiXu_06g0015990.02 | Chr06 | 16218521 | 16220899 | + | NAM | ||
| CDS seq | atgtccactgctgccgccatttcatctccttccccatcccacgcggacttggttctgcaagatctgtgccgcatcgagcacccacaagcacgcggtaaccaaaaggcctggagctatttttggaagcacaaacgtaaggatcacatatgtacattatcctatcataacattaacaacgttggaccatacttttggtgggtgctgcatgcagttattattatcaaagccatgaaaggttcaaggcttccagctgcttggcaattgctcttcaggatttctctacctattaactgttattgcctgtgtgggatatgcatgctcttcattactgtatatggtatgctcttcatgaagccatctgcgctcctccgatggcatgttgctggatatgcagtcatctccagtttggtcattctctgctga
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| Protein seq | MSTAAAISSPSPSHADLVLQDLCRIEHPQARGNQKAWSYFWKHKRKDHICTLSYHNINNVGPYFWWVLHAVIIIKAMKGSRLPAAWQLLFRISLPINCYCLCGICMLFITVYGMLFMKPSALLRWHVAGYAVISSLVILC |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.167180 | 2.066505 | 1.542481 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g25500 | RBH | 1.060776 | 1.779387 | 0.836653 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0015720 | RBH | 0.738945 | 0.000000 | 12.110597 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0015480 | RBH | 0.281660 | 4.048879 | 4.219406 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0015670 | RBH | 1.080733 | 4.248808 | 13.620473 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0015640 | RBH | 0.144521 | 0.097631 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0015790 | RBH | 10.958415 | 21.097799 | 31.728016 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0250300 | RBH | 3.7968365 | 10.6364145 | 29.416606 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0015270 | RBH | 0.314364 | 0.238787 | 2.088598 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0231900 | RBH | 4.7762055 | 11.048815 | 18.3638 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0015660 | RBH | 0.078873 | 0.219727 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0015600 | RBH | 0.406723 | 4.938557 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0015330 | RBH | 2.264450 | 26.205484 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0015390 | RBH | 0.565790 | 7.473816 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G015340 | RBH | 0.000000 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0015600 | RBH | 1.242196 | 20.409391 | 14.536360 |
