Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_06g0013060 | OGI:06002680 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr06:11302532-11306914 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gggcaggggaaaggcattccaagaacttgtacatgtagcaaacaggttaacgaatagtaatacataccagcaaaggctatactacagagtctgatgagaaggggaaatagtacagctgaggaactaatcaaaagttgaactccacttactccacagaagcaaaagatcctgcctgaaggatggacgttatataattactcctcgctacaaacacaatacattatatagccacaaatcaatggaaacatcagaaatgtcctctctttatctaatataccataaggttaaagatcatggtgtgctcggaaccggatcggtgccagaaatgtgtgaggatgcatcttccttagcagctgctacattcccgggggaagctgtcttggcagagtccctcttgccatcctttcctccagaccttccgttctggtgaccgctAaccgaaagtctcctattcggaggagtgccattagcactgccatttgattttgcaccaggtaccttctttgcactggtctgttagggctcacacgtgaaccaaatggcccttcatggtcggtgttcagttgttgctcgatgtagcgcttttgttcctgggatgtgaacacaggtgagcaacatataaaatgaagtgttagcaaaacggaaattgctgtgaaaagcaatcgtgctgttagtctgttacaatttatttattccctcacaataccaatctatacaatgcatggattagtatgcaattttcacctaaatgctgtctgcagaacaattttttggtgttttgtgacttgaaaatactgacataattcatcaccaaaagagacatgactcaacacgagatttaaaagaattcgatcaacgctcaagggtgatacgtgttcaagaaaatggattcaacatttaaagaggaagtggcactcaccctcattcttttcttatctttccctttcctgccttagcatgacatattcatccaacatagctagaagaggtacaccatcatacataaaggacagaccacggctctcctcccatgccctggtctttgccaccagagtttcaacaagtgctagaataaaaccattcattacattagccaaacactaacaaagcatatgattagcagaattcataaatttactcaaaacaaaaatgaacggtacagtaaaaAaataagccccatggacatatagtgttcctaggtatgaaaaaatttgcaactgACTAactaagCAagaggtttccattgctgtcatccaaacatacctggaatcttgttgacaagaatccgagcTttttcagcacgtttgagattcaggtgggcacctcggcttgagttatatctgttgtcatcctgcagaaggattttcaattcatgaAaggctatttaaaaacagCataatttggtaatatcacttaaatcatgaaagaataaaagatgtaatacttttgatttgctacaacaaaatatcaActtacccggttataatcttcaagccagctttcttcttcacaagcagacatccatctttcaactttgtctaatatttcttttctactcaatgtcttcctttgcttttgatatctggctttccatatctgcaatcaattctgatggttctatgttccctgcctcaatcagcgccaatattttttcatgggcagcagctgtatctattaccatgtgagcaccagcatagatgtcttccaactcagtttgcttcttgaaagctatttccttcatcttgctgtattttagctggtctagcctttgaacctctaCctcagcctgaacaatttggaaacagaaagtcaaatgcagtggaaggatTAGCGtagtgtcagacagtaattgcaccaaaaaagatttactgtttaatctcacttgctcaatgagatccagggcaagagctccaggtgcagtgactttgtctacagaggctgatctgttgcaggtgacatgatcaaacatgctcctttcttgcatgggggcatccatgagatcccaaagatcgtagagttgaccagcaagctcttgaagctgagaacaagaagcaagccattagatgctattgtccatgcaaagagtagtcatatttcaataagacaagaacaatgatgaaacatattacaagaatcaagaaaaaaaaacccagcaaatttgtatagatcaaaggcctgaaaggccctgcttctattgaaagcataaaaaaagaaatactgcaaatagagtatgattcaatttcagtaaggatttaaaaatgttctttaccttgcttagtcttgactttttgtcttcattaagtgtggctacagtcttgtcaagttttgacagtgtatcattgctaatgctcttgcagttgtcaccaatagagtcatccaaactgggatgaacttcagtcactgtgctaagaaaatccatccctaagacagtacagagattatgtatcatgctcacataatcaagaaccttctccaacctattgctctgcaaaccaattcccaagggaaccaaatcttgtcagcaatggtcaggcatcacagctagcaccaaatgaagaaattatacaggttacatgtaccttctctttttcgagctcctgtagttgtgaacgaaattcttcaagcctctcaagtgtcaaatcatcctcattaacttgtggcgttgccaccttctcacccacctccgtagtgccagcaatctcaccacatatttgatcaatttgtgactgaacattaacaaattcccgcactctttcgtttttctgcttgttcaacttctcgagtgttggcgctatagcagcaagttgttgcttgattgtcccagacgtcttctcaggctgcatgcatcgagcactcttgtttttacttcaagttataataatgaaaacaagaaactaaacattcagaacgaggtattgcctgacttctaagctacaacaccaaacttaacggagaagacattatttaggacaagtaagttgcaacttgcaccaccaattgtcctccgctgagccactcacgttgcatcgaacaatgactattcaatgtgatgataatgctcacttacagttcttgctatggccttctctcctagagcagataaaagtctggccagctcaatcttcgagtcatccagcgcctggataaggagatccctagagtcggtggcctggtcaactttcctcttgtaaacatccaggcactcctgatctaactggtacaggaccttgtcgcggtcctcgtcgctctcaccaacttcatcccatatcaactgcagttttaagaacagaagcacaccactatcacaacacaaagcaaggcacaaatgcataaactagacgcggatcgcaaaaacacaagcaacaaatcaatcacgcacctgcagtttctgcagcaaggatccacacgtaatgtcgccagccatctcagaacagatgaacctgtcaggaagcagagagttagtacatgatgggtacatcccagatcagcctAactaacaagaattagcaccaaatgcacttccaaattcgattggcaccaactctacagttagccattaaatctgccatgcatcgcatgcaagacttaatagtagttaaattagcagctatacaagtcatggtaacactaagatccgaccccccatcattgccaataatgaagacctaggcctatactttatgaggatcctacagctaagattaagcttaaacccagaagaaatccccaaaccccaccaatcccacaccaaaaaatgctaaacccgaatgcttttcaccaattgaccatatttgaccaagcaataattccatccaaaacgtcacgatctgagcacacatggaaggagcaaacctcacaaacaagcagatcaacagcaaacccccgaagcagaagcggatcccccacacaacccacccccactgccgcccaaaactcccccccaaacccacacccgcacccccacccacggcaaaaaaaccccgcccgcattacgcccagccactcgagatctcggcatccatccatcaatccatccagcagccgcaccgccgccgcccacgacgacgagacggcacaagcgtcaaagcacaccccaaaaaaaaaaaaaaaaaaactcacccagatcgaaggagcggaatgcgagcgcgcagctcgaggcagagtgatccgcggcgcccccgacacaCccagcgacagacgagcacgagccccctcctcccctagtgctccgccgctcgccgccacGgcgccgccggcaggagagagacgagagagagaGggaggagtctggagtgagagtgagtcactgtactggactgggagggcgaccgtctctctctcgtctcgtctcggtgctagtagtactgggctgttgctgttgct
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| CDS seq | atggctggcgacattacgtgtggatccttgctgcagaaactgcagttgatatgggatgaagttggtgagagcgacgaggaccgcgacaaggtcctgtaccagttagatcaggagtgcctggatgtttacaagaggaaagttgaccaggccaccgactctagggatctccttatccaggcgctggatgactcgaagattgagctggccagacttttatctgctctaggagagaaggccatagcaagaactcctgagaagacgtctgggacaatcaagcaacaacttgctgctatagcgccaacactcgagaagttgaacaagcagaaaaacgaaagagtgcgggaatttgttaatgttcagtcacaaattgatcaaatatgtggtgagattgctggcactacggaggtgggtgagaaggtggcaacgccacaagttaatgaggatgatttgacacttgagaggcttgaagaatttcgttcacaactacaggagctcgaaaaagagaagagcaataggttggagaaggttcttgattatgtgagcatgatacataatctctgtactgtcttagggatggattttcttagcacagtgactgaagttcatcccagtttggatgactctattggtgacaactgcaagagcattagcaatgatacactgtcaaaacttgacaagactgtagccacacttaatgaagacaaaaagtcaagactaagcaagcttcaagagcttgctggtcaactctacgatctttgggatctcatggatgcccccatgcaagaaaggagcatgtttgatcatgtcacctgcaacagatcagcctctgtagacaaagtcactgcacctggagctcttgccctggatctcattgagcaagctgagGtagaggttcaaaggctagaccagctaaaatacagcaagatgaaggaaatagctttcaagaagcaaactgagttggaagacatctatgctggtgctcacatgatatggaaagccagatatcaaaagcaaaggaagacattgagtagaaaagaaatattagacaaagttgaaagatggatgtctgcttgtgaagaagaaagctggcttgaagattataaccgggatgacaacagatataactcaagccgaggtgcccacctgaatctcaaacgtgctgaaaaAgctcggattcttgtcaacaagattccagcacttgttgaaactctggtggcaaagaccagggcatgggaggagagccgtggtctgtcctttatgtatgatggtgtacctcttctagctatgttggatgaatatgtcatgctaaggcaggaaagggaaagataa
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| Protein seq | MAGDITCGSLLQKLQLIWDEVGESDEDRDKVLYQLDQECLDVYKRKVDQATDSRDLLIQALDDSKIELARLLSALGEKAIARTPEKTSGTIKQQLAAIAPTLEKLNKQKNERVREFVNVQSQIDQICGEIAGTTEVGEKVATPQVNEDDLTLERLEEFRSQLQELEKEKSNRLEKVLDYVSMIHNLCTVLGMDFLSTVTEVHPSLDDSIGDNCKSISNDTLSKLDKTVATLNEDKKSRLSKLQELAGQLYDLWDLMDAPMQERSMFDHVTCNRSASVDKVTAPGALALDLIEQAEVEVQRLDQLKYSKMKEIAFKKQTELEDIYAGAHMIWKARYQKQRKTLSRKEILDKVERWMSACEEESWLEDYNRDDNRYNSSRGAHLNLKRAEKARILVNKIPALVETLVAKTRAWEESRGLSFMYDGVPLLAMLDEYVMLRQERER |
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| Function | 65-kDa microtubule-associated protein 1 [UniProtKB/Swiss-Prot:Q9FLP0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_06g0013060 | OsLiXu_06g0013060.01 | Chr06 | 11302532 | 11306914 | - | NAM | ||
| CDS seq | atggctggcgacattacgtgtggatccttgctgcagaaactgcagttgatatgggatgaagttggtgagagcgacgaggaccgcgacaaggtcctgtaccagttagatcaggagtgcctggatgtttacaagaggaaagttgaccaggccaccgactctagggatctccttatccaggcgctggatgactcgaagattgagctggccagacttttatctgctctaggagagaaggccatagcaagaactcctgagaagacgtctgggacaatcaagcaacaacttgctgctatagcgccaacactcgagaagttgaacaagcagaaaaacgaaagagtgcgggaatttgttaatgttcagtcacaaattgatcaaatatgtggtgagattgctggcactacggaggtgggtgagaaggtggcaacgccacaagttaatgaggatgatttgacacttgagaggcttgaagaatttcgttcacaactacaggagctcgaaaaagagaagagcaataggttggagaaggttcttgattatgtgagcatgatacataatctctgtactgtcttagggatggattttcttagcacagtgactgaagttcatcccagtttggatgactctattggtgacaactgcaagagcattagcaatgatacactgtcaaaacttgacaagactgtagccacacttaatgaagacaaaaagtcaagactaagcaagcttcaagagcttgctggtcaactctacgatctttgggatctcatggatgcccccatgcaagaaaggagcatgtttgatcatgtcacctgcaacagatcagcctctgtagacaaagtcactgcacctggagctcttgccctggatctcattgagcaagctgagGtagaggttcaaaggctagaccagctaaaatacagcaagatgaaggaaatagctttcaagaagcaaactgagttggaagacatctatgctggtgctcacatgatatggaaagccagatatcaaaagcaaaggaagacattgagtagaaaagaaatattagacaaagttgaaagatggatgtctgcttgtgaagaagaaagctggcttgaagattataaccgggatgacaacagatataactcaagccgaggtgcccacctgaatctcaaacgtgctgaaaaAgctcggattcttgtcaacaagattccagcacttgttgaaactctggtggcaaagaccagggcatgggaggagagccgtggtctgtcctttatgtatgatggtgtacctcttctagctatgttggatgaatatgtcatgctaaggcaggaaagggaaagataa
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| Protein seq | MAGDITCGSLLQKLQLIWDEVGESDEDRDKVLYQLDQECLDVYKRKVDQATDSRDLLIQALDDSKIELARLLSALGEKAIARTPEKTSGTIKQQLAAIAPTLEKLNKQKNERVREFVNVQSQIDQICGEIAGTTEVGEKVATPQVNEDDLTLERLEEFRSQLQELEKEKSNRLEKVLDYVSMIHNLCTVLGMDFLSTVTEVHPSLDDSIGDNCKSISNDTLSKLDKTVATLNEDKKSRLSKLQELAGQLYDLWDLMDAPMQERSMFDHVTCNRSASVDKVTAPGALALDLIEQAEVEVQRLDQLKYSKMKEIAFKKQTELEDIYAGAHMIWKARYQKQRKTLSRKEILDKVERWMSACEEESWLEDYNRDDNRYNSSRGAHLNLKRAEKARILVNKIPALVETLVAKTRAWEESRGLSFMYDGVPLLAMLDEYVMLRQERER
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.999718 | 0.380811 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0308300 | RBH | 0.000000 | 0.108310 | 13.042290 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g20370 | RBH | 0.000000 | 0.070759 | 3.318538 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0308300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0012830 | RBH | 0.064697 | 13.721500 | 16.511593 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0012670 | RBH | 0.068400 | 9.173762 | 6.178550 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0012730 | RBH | 0.0 | 25.819456 | 19.232286 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0012780 | RBH | 0.000000 | 1.673202 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0012910 | RBH | 0.000000 | 75.233582 | 27.323442 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0012370 | RBH | 0.065296 | 4.916501 | 2.794531 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0187400 | RBH | 18.902534 | 7.550175 | 166.24411 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0012920 | RBH | 0.0 | 1.586524 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0012780 | RBH | 0.000000 | 62.340393 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0012580 | RBH | 0.000000 | 76.209846 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0032640 | RBH | 0.0 | 0.0 | 0.928891 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0012660 | RBH | 0.056195 | 32.307152 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G012530 | RBH | 0.065627 | 23.489494 | 10.339206 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0012850 | RBH | 0.0 | 27.259165 | 16.431099 |
