Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_06g0012450 | OGI:06031060 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr06:10590458-10594239 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggcccccacgacagtaatcaaggcaaagtccccaagtcaagtcaactgtaagacaaagacaagcctccttgttcacatagctgttgcagtattggaactaaagtatactattgagtactgatcaagtttcactagtcacaattaagaaatctgaatgaagaaaagaaaacttttagtatattcttaaaagtttagtgaaaaggggaattggaaaggaggaagaaagagggggcagaaagcagacgaactaggagtccagtcactaagaagcaacgaagacactgcctcctgaataaagtatgtagacttgactgactcttatattgctcttttgtttggaaaattttccgtgttgaagtgcataatttgccaaattatctcctaagactgggttgaaatgtagaattttttttctgaatatgaactaatgcacacattagattcagacctgtttgcatgatccaccaaactgacttcaatttatatgagactgcactgagtaaaattactgtgatttaatcgacggctaacgacataacaacatactaataatttctgctagtttgagctggtccaacggctgagaagtgagaacccaatgttgacttggatttgttcTtttttcattttttatcgtttgtacctcactcttctatctagtggaggtctatccaaagacccaaacccctgctcatatagcagctcatctccatcttcttgcaaaccatcagtagttagttcatctctccatctgcatgacttgaagccatccaatgctacaatcttcagaggaaaacccaagattttcttggaatctttgagctcaactccatgagctctgtagagaacccaagcaatggcaggagcaatggccatgctcttgccagcactgctgctgatgcggcacaagcgctgcagcaaggccaagccgagcagaatccgtgcgacgcgggctccgaggccgatctcctgtggaagctgaggaagtacctggtgctgcttgccatcctaacagcggccatcaccttccaagccgggcttggcccccccggcggcttctggcagcaggaccagcacggctaccacgccggcgacgtggtgctcaggtacagctacccgaggaggtacctcgtcttcttctactgcaacaccacggcgttcggggcgtccctcatcgtcctcatactgctcctcatcaaggagctgagccacaaagccatttggctccggtccctccagttcgccatggttctcggcttgcttggcctcatgggtgcctacgctgccggcagctgcagggaggtgaggacctccgtctacatctgggctttgcttgttggcatctttgcatatatcactctccatgtcatattcttccggcacctcgcacctcgatggctgcgtgacaaattgggcaagattcgggaacattggaagaaaattctggggagaatacatggagatgaaggagccgatgagacaggaaaaactgaagattctgaagagacgaaacgtctggaacagaatcgcagcttcttgctggttcttgccacattggctgcaacggtgacatacaccgcagggctaaacccaccaggtggattctggcctgatgacaacaagcctagccatcttgctggtgacccggtgctgcgagatcactacccgcgccggttcaaggcgttcttggtctgcaatgccactgcatttgctggatcacttgtcatcatcatcatgctgctcagcaatacagcagtggatcatgttgtcaagtcaaatgctctgcggttgtgtgtgctggtgagcctctttgggcttatgggtgcctatgctgctgggagttgcagggaagtccatacatctatatatgtctttgcccttgttggtgctgttttcctctacctctttattcagtggatcgagcatatggtgccaaagccaccttgcataaagaattccattgaatgggtgggaacaaagaagacccatttacttaagaagctgagttccttcatcatgcggggggctaggaatcctactgaagaaacgcgctctactcccagagcacaaaatccagtgaacaatgcaaggtcaagcacttccgatactgctaaggatgatgttgagaagttgcgcacatatcttctattgcttggtatccttgctgccactgtcacataccaagctgggctaaatccaccaggtggcttttggcaagataataatgatggacatactgctggtgacccaatcttggaggccatcaatcccaagcgctacaaggcattcttctattgcaatgcaaccgcattcgtggcatctttggtgatcatcatcttacttcagagtcaactgattactgttggtgccatgaagcgtcacatattgcaaacagccatggcattggacctttttggactgatgggggcctatgctgctggaagtagcagaaagttctcgacgtctgtgtatgtgttcatcttggcccttgttgttttcacttatttcgcccttcatgttctgctgtccatggctctcaagactcaactgaagacaaaagttgaatatgtgccgaacttattccatcgttttacaagagattgtttcagacgaactgaaggggggaatgacgatggacgaagcaatttggtggagcagcaaaatgaagaaaaagatttggagaagcggcgcaagtttctgatgatgcttgcgattctagcggcttccatcacatatcaatctggtctaagcccaccaggtggcttctggagtgacaacaaagatgatcaccgaccaggcgatccagtgctccatgatgagttccgacgccgttacaggattttcttctacttcaacgccactgctttcatgtcatctctggcggtgattatgttgcttgttagcaagaggctgtgtcacaagggtctgaagtcctatgctttgcgcgcttgcgtgctggttgatttgattagtctcatgggtgcttttgctgctggaagctgcaggagagtgtccacatctatctatgtcattcttgtcgtcgctgcagtatttgcatatgtcacgattcaatgcctggttctgggatttgcacaacaaattgggaagacgtttcaattcctggctccagaaatcgtaaaaattgtaaatgacttcatcaggaagcatcgttctggttttgagagccaacagaggtccataactcagactgcaggaagcatcgataggaagagaacagaacacaaatggcgcaaagatttgatgctgattggaactcttgcagtcactgtcacataccaagctgggctactccctccaggtggactttggcctagtgaccttgacggccattattatgcaggcgacccagtcctcaaggttacccatccaatacggtacaaggtattcttctattgcaatgcaacagcattcatggcctcaacggtcatggtcatcctccttctgaacaacacaataagcaagtacaagagatcactccttgccatgaagacagcaatggtattagacttgcttggtctccttggggcatatgcagccggcagctgcaggaagttcaagacatctgcttacatttttgcacttgtcatcgccgtgtttatctacattgtcattcatgtattgctgtcatttgatgaggtcgcgttgttagtgaaagagaagggaaagaaatggatgccatgccttaagatgtgggatcagattgaaacaggagtttcagatcaaccttctgctatgcaatcaggagacccacctgtgtaa
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| CDS seq | atggcccccacgacagtaatcaaggcaaagtccccaagtcaagtcaactccatccaatgctacaatcttcagaggaaaacccaagattttcttggaatctttgagctcaactccatgagctctgtagagaacccaagcaatggcaggagcaatggccatgctcttgccagcactgctgctgatgcggcacaagcgctgcagcaaggccaagccgagcagaatccgtgcgacgcgggctccgaggccgatctcctgtggaagctgaggaagtacctggtgctgcttgccatcctaacagcggccatcaccttccaagccgggcttggcccccccggcggcttctggcagcaggaccagcacggctaccacgccggcgacgtggtgctcaggtacagctacccgaggaggtacctcgtcttcttctactgcaacaccacggcgttcggggcgtccctcatcgtcctcatactgctcctcatcaaggagctgagccacaaagccatttggctccggtccctccagttcgccatggttctcggcttgcttggcctcatgggtgcctacgctgccggcagctgcagggaggtgaggacctccgtctacatctgggctttgcttgttggcatctttgcatatatcactctccatgtcatattcttccggcacctcgcacctcgatggctgcgtgacaaattgggcaagattcgggaacattggaagaaaattctggggagaatacatggagatgaaggagccgatgagacaggaaaaactgaagattctgaagagacgaaacgtctggaacagaatcgcagcttcttgctggttcttgccacattggctgcaacggtgacatacaccgcagggctaaacccaccaggtggattctggcctgatgacaacaagcctagccatcttgctggtgacccggtgctgcgagatcactacccgcgccggttcaaggcgttcttggtctgcaatgccactgcatttgctggatcacttgtcatcatcatcatgctgctcagcaatacagcagtggatcatgttgtcaagtcaaatgctctgcggttgtgtgtgctggtgagcctctttgggcttatgggtgcctatgctgctgggagttgcagggaagtccatacatctatatatgtctttgcccttgttggtgctgttttcctctacctctttattcagtggatcgagcatatggtgccaaagccaccttgcataaagaattccattgaatgggtgggaacaaagaagacccatttacttaagaagctgagttccttcatcatgcggggggctaggaatcctactgaagaaacgcgctctactcccagagcacaaaatccagtgaacaatgcaaggtcaagcacttccgatactgctaaggatgatgttgagaagttgcgcacatatcttctattgcttggtatccttgctgccactgtcacataccaagctgggctaaatccaccaggtggcttttggcaagataataatgatggacatactgctggtgacccaatcttggaggccatcaatcccaagcgctacaaggcattcttctattgcaatgcaaccgcattcgtggcatctttggtgatcatcatcttacttcagagtcaactgattactgttggtgccatgaagcgtcacatattgcaaacagccatggcattggacctttttggactgatgggggcctatgctgctggaagtagcagaaagttctcgacgtctgtgtatgtgttcatcttggcccttgttgttttcacttatttcgcccttcatgttctgctgtccatggctctcaagactcaactgaagacaaaagttgaatatgtgccgaacttattccatcgttttacaagagattgtttcagacgaactgaaggggggaatgacgatggacgaagcaatttggtggagcagcaaaatgaagaaaaagatttggagaagcggcgcaagtttctgatgatgcttgcgattctagcggcttccatcacatatcaatctggtctaagcccaccaggtggcttctggagtgacaacaaagatgatcaccgaccaggcgatccagtgctccatgatgagttccgacgccgttacaggattttcttctacttcaacgccactgctttcatgtcatctctggcggtgattatgttgcttgttagcaagaggctgtgtcacaagggtctgaagtcctatgctttgcgcgcttgcgtgctggttgatttgattagtctcatgggtgcttttgctgctggaagctgcaggagagtgtccacatctatctatgtcattcttgtcgtcgctgcagtatttgcatatgtcacgattcaatgcctggttctgggatttgcacaacaaattgggaagacgtttcaattcctggctccagaaatcgtaaaaattgtaaatgacttcatcaggaagcatcgttctggttttgagagccaacagaggtccataactcagactgcaggaagcatcgataggaagagaacagaacacaaatggcgcaaagatttgatgctgattggaactcttgcagtcactgtcacataccaagctgggctactccctccaggtggactttggcctagtgaccttgacggccattattatgcaggcgacccagtcctcaaggttacccatccaatacggtacaaggtattcttctattgcaatgcaacagcattcatggcctcaacggtcatggtcatcctccttctgaacaacacaataagcaagtacaagagatcactccttgccatgaagacagcaatggtattagacttgcttggtctccttggggcatatgcagccggcagctgcaggaagttcaagacatctgcttacatttttgcacttgtcatcgccgtgtttatctacattgtcattcatgtattgctgtcatttgatgaggtcgcgttgttagtgaaagagaagggaaagaaatggatgccatgccttaagatgtgggatcagattgaaacaggagtttcagatcaaccttctgctatgcaatcaggagacccacctgtgtaa
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| Protein seq | MAPTTVIKAKSPSQVNSIQCYNLQRKTQDFLGIFELNSMSSVENPSNGRSNGHALASTAADAAQALQQGQAEQNPCDAGSEADLLWKLRKYLVLLAILTAAITFQAGLGPPGGFWQQDQHGYHAGDVVLRYSYPRRYLVFFYCNTTAFGASLIVLILLLIKELSHKAIWLRSLQFAMVLGLLGLMGAYAAGSCREVRTSVYIWALLVGIFAYITLHVIFFRHLAPRWLRDKLGKIREHWKKILGRIHGDEGADETGKTEDSEETKRLEQNRSFLLVLATLAATVTYTAGLNPPGGFWPDDNKPSHLAGDPVLRDHYPRRFKAFLVCNATAFAGSLVIIIMLLSNTAVDHVVKSNALRLCVLVSLFGLMGAYAAGSCREVHTSIYVFALVGAVFLYLFIQWIEHMVPKPPCIKNSIEWVGTKKTHLLKKLSSFIMRGARNPTEETRSTPRAQNPVNNARSSTSDTAKDDVEKLRTYLLLLGILAATVTYQAGLNPPGGFWQDNNDGHTAGDPILEAINPKRYKAFFYCNATAFVASLVIIILLQSQLITVGAMKRHILQTAMALDLFGLMGAYAAGSSRKFSTSVYVFILALVVFTYFALHVLLSMALKTQLKTKVEYVPNLFHRFTRDCFRRTEGGNDDGRSNLVEQQNEEKDLEKRRKFLMMLAILAASITYQSGLSPPGGFWSDNKDDHRPGDPVLHDEFRRRYRIFFYFNATAFMSSLAVIMLLVSKRLCHKGLKSYALRACVLVDLISLMGAFAAGSCRRVSTSIYVILVVAAVFAYVTIQCLVLGFAQQIGKTFQFLAPEIVKIVNDFIRKHRSGFESQQRSITQTAGSIDRKRTEHKWRKDLMLIGTLAVTVTYQAGLLPPGGLWPSDLDGHYYAGDPVLKVTHPIRYKVFFYCNATAFMASTVMVILLLNNTISKYKRSLLAMKTAMVLDLLGLLGAYAAGSCRKFKTSAYIFALVIAVFIYIVIHVLLSFDEVALLVKEKGKKWMPCLKMWDQIETGVSDQPSAMQSGDPPV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_06g0012450 | OsLiXu_06g0012450.01 | Chr06 | 10590458 | 10594239 | + | NAM | ||
| CDS seq | atggcccccacgacagtaatcaaggcaaagtccccaagtcaagtcaactccatccaatgctacaatcttcagaggaaaacccaagattttcttggaatctttgagctcaactccatgagctctgtagagaacccaagcaatggcaggagcaatggccatgctcttgccagcactgctgctgatgcggcacaagcgctgcagcaaggccaagccgagcagaatccgtgcgacgcgggctccgaggccgatctcctgtggaagctgaggaagtacctggtgctgcttgccatcctaacagcggccatcaccttccaagccgggcttggcccccccggcggcttctggcagcaggaccagcacggctaccacgccggcgacgtggtgctcaggtacagctacccgaggaggtacctcgtcttcttctactgcaacaccacggcgttcggggcgtccctcatcgtcctcatactgctcctcatcaaggagctgagccacaaagccatttggctccggtccctccagttcgccatggttctcggcttgcttggcctcatgggtgcctacgctgccggcagctgcagggaggtgaggacctccgtctacatctgggctttgcttgttggcatctttgcatatatcactctccatgtcatattcttccggcacctcgcacctcgatggctgcgtgacaaattgggcaagattcgggaacattggaagaaaattctggggagaatacatggagatgaaggagccgatgagacaggaaaaactgaagattctgaagagacgaaacgtctggaacagaatcgcagcttcttgctggttcttgccacattggctgcaacggtgacatacaccgcagggctaaacccaccaggtggattctggcctgatgacaacaagcctagccatcttgctggtgacccggtgctgcgagatcactacccgcgccggttcaaggcgttcttggtctgcaatgccactgcatttgctggatcacttgtcatcatcatcatgctgctcagcaatacagcagtggatcatgttgtcaagtcaaatgctctgcggttgtgtgtgctggtgagcctctttgggcttatgggtgcctatgctgctgggagttgcagggaagtccatacatctatatatgtctttgcccttgttggtgctgttttcctctacctctttattcagtggatcgagcatatggtgccaaagccaccttgcataaagaattccattgaatgggtgggaacaaagaagacccatttacttaagaagctgagttccttcatcatgcggggggctaggaatcctactgaagaaacgcgctctactcccagagcacaaaatccagtgaacaatgcaaggtcaagcacttccgatactgctaaggatgatgttgagaagttgcgcacatatcttctattgcttggtatccttgctgccactgtcacataccaagctgggctaaatccaccaggtggcttttggcaagataataatgatggacatactgctggtgacccaatcttggaggccatcaatcccaagcgctacaaggcattcttctattgcaatgcaaccgcattcgtggcatctttggtgatcatcatcttacttcagagtcaactgattactgttggtgccatgaagcgtcacatattgcaaacagccatggcattggacctttttggactgatgggggcctatgctgctggaagtagcagaaagttctcgacgtctgtgtatgtgttcatcttggcccttgttgttttcacttatttcgcccttcatgttctgctgtccatggctctcaagactcaactgaagacaaaagttgaatatgtgccgaacttattccatcgttttacaagagattgtttcagacgaactgaaggggggaatgacgatggacgaagcaatttggtggagcagcaaaatgaagaaaaagatttggagaagcggcgcaagtttctgatgatgcttgcgattctagcggcttccatcacatatcaatctggtctaagcccaccaggtggcttctggagtgacaacaaagatgatcaccgaccaggcgatccagtgctccatgatgagttccgacgccgttacaggattttcttctacttcaacgccactgctttcatgtcatctctggcggtgattatgttgcttgttagcaagaggctgtgtcacaagggtctgaagtcctatgctttgcgcgcttgcgtgctggttgatttgattagtctcatgggtgcttttgctgctggaagctgcaggagagtgtccacatctatctatgtcattcttgtcgtcgctgcagtatttgcatatgtcacgattcaatgcctggttctgggatttgcacaacaaattgggaagacgtttcaattcctggctccagaaatcgtaaaaattgtaaatgacttcatcaggaagcatcgttctggttttgagagccaacagaggtccataactcagactgcaggaagcatcgataggaagagaacagaacacaaatggcgcaaagatttgatgctgattggaactcttgcagtcactgtcacataccaagctgggctactccctccaggtggactttggcctagtgaccttgacggccattattatgcaggcgacccagtcctcaaggttacccatccaatacggtacaaggtattcttctattgcaatgcaacagcattcatggcctcaacggtcatggtcatcctccttctgaacaacacaataagcaagtacaagagatcactccttgccatgaagacagcaatggtattagacttgcttggtctccttggggcatatgcagccggcagctgcaggaagttcaagacatctgcttacatttttgcacttgtcatcgccgtgtttatctacattgtcattcatgtattgctgtcatttgatgaggtcgcgttgttagtgaaagagaagggaaagaaatggatgccatgccttaagatgtgggatcagattgaaacaggagtttcagatcaaccttctgctatgcaatcaggagacccacctgtgtaa
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| Protein seq | MAPTTVIKAKSPSQVNSIQCYNLQRKTQDFLGIFELNSMSSVENPSNGRSNGHALASTAADAAQALQQGQAEQNPCDAGSEADLLWKLRKYLVLLAILTAAITFQAGLGPPGGFWQQDQHGYHAGDVVLRYSYPRRYLVFFYCNTTAFGASLIVLILLLIKELSHKAIWLRSLQFAMVLGLLGLMGAYAAGSCREVRTSVYIWALLVGIFAYITLHVIFFRHLAPRWLRDKLGKIREHWKKILGRIHGDEGADETGKTEDSEETKRLEQNRSFLLVLATLAATVTYTAGLNPPGGFWPDDNKPSHLAGDPVLRDHYPRRFKAFLVCNATAFAGSLVIIIMLLSNTAVDHVVKSNALRLCVLVSLFGLMGAYAAGSCREVHTSIYVFALVGAVFLYLFIQWIEHMVPKPPCIKNSIEWVGTKKTHLLKKLSSFIMRGARNPTEETRSTPRAQNPVNNARSSTSDTAKDDVEKLRTYLLLLGILAATVTYQAGLNPPGGFWQDNNDGHTAGDPILEAINPKRYKAFFYCNATAFVASLVIIILLQSQLITVGAMKRHILQTAMALDLFGLMGAYAAGSSRKFSTSVYVFILALVVFTYFALHVLLSMALKTQLKTKVEYVPNLFHRFTRDCFRRTEGGNDDGRSNLVEQQNEEKDLEKRRKFLMMLAILAASITYQSGLSPPGGFWSDNKDDHRPGDPVLHDEFRRRYRIFFYFNATAFMSSLAVIMLLVSKRLCHKGLKSYALRACVLVDLISLMGAFAAGSCRRVSTSIYVILVVAAVFAYVTIQCLVLGFAQQIGKTFQFLAPEIVKIVNDFIRKHRSGFESQQRSITQTAGSIDRKRTEHKWRKDLMLIGTLAVTVTYQAGLLPPGGLWPSDLDGHYYAGDPVLKVTHPIRYKVFFYCNATAFMASTVMVILLLNNTISKYKRSLLAMKTAMVLDLLGLLGAYAAGSCRKFKTSAYIFALVIAVFIYIVIHVLLSFDEVALLVKEKGKKWMPCLKMWDQIETGVSDQPSAMQSGDPPV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.467118 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0297400 | RBH | 1.654374 | 1.796906 | 2.964378 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g19370 | RBH | 1.049210 | 1.139763 | 0.697191 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0297400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0012260 | RBH | 0.162895 | 29.692535 | 1.593303 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0012120 | RBH | 0.0 | 7.021999 | 0.521343 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0012150 | RBH | 0.924240 | 36.124538 | 5.290985 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0012200 | RBH | 0.091194 | 0.558110 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0012060 | SBH | 0.357709 | 4.364165 | 0.736003 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0180100 | RBH | 1.4566085 | 22.5342685 | 0.9635545 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0011780 | RBH | 0.202552 | 2.460503 | 0.326164 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0175800 | RBH | 2.2379675 | 15.751374 | 1.9311855 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0012090 | SBH | 0.014147 | 0.080845 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0011930 | SBH | 0.089425 | 2.502200 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0012010 | RBH | 0.0 | 12.127243 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0031640 | SBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0011810 | SBH | 0.020095 | 2.943754 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G011940 | RBH | 0.047619 | 1.576552 | 0.227232 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0012280 | RBH | 1.064420 | 28.958273 | 1.903208 |
