Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_06g0012370 | OGI:06027190 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr06:10537683-10539985 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttagccgttcctcgccatagaagctttcgacctgcaaaactagagtaagcaagagagaaacgtgctaacagtttaaagaaaatcttcacttgggagatggatatctaatagactgcagaaagtcagtcttagcagaagaatacaaaaaactcccatgtctttctggtcaaagaaagtatagccatgtccagatcatttccttcaaaaaaatcaactacacatttaaaaatgacgtacgaggattggaagaaagtctgcgcatggtcagtctccgttaagctgataccccacaactctacataatgcatgttatggtgaaggacctgattggcattgcgttgttgacgccttgaggcacctcctttcagtcactgctcctcagctagcaaacaaatggtaaaacagtcgttagagtaatccaaagatgaagacaaaccagtgtagtattgcttgtggaagtacttctacctcttgctgatggccattatggtggccatggtgacatatgccgcagggtttaacctgcatgagatatgatgactagatccataaaagtctttacagtgttggaacctcgacagttacaatctgtaagtttgggcagtcaaaatgtataagtaaacgcatcccatctgaaaagaaaggacagctacagaaagcagctagacacaccctggagtgtataccaaactttacatacatgtatatctcacgttcaccattagttggaaagctgaatttaagactatgggcatttcaccaaacaagagttttgctggcattctagaagttcaaattaagaaacacttcaattcgtctcctgcatatcttacacattagcatatatgctgaaatagagcactggaatgaagacaagatagttcacaattatggcctctgttaatgagaattgtggcttgcctcgcaattaaaaagaacatccagtagctgttgctagccaaagagactgtcaagtttcaacctgaaagtccctcaaaaaaaagtttcaatcagcaaaattagactaagcaagagaaacgtggaaacagtttaatcaaatcttgacatgggattgggatatatatgaactccataaagtcagtctttcagaagaaaacaaacactcgtcttttgggtcaataactacatagatgtccagatcacttggccatataaacaattcaagccgctcatagacagatttatgggaagctcaaacaaagaggaaacaaggtgagatcaaatcaacgtcaatgaatcaactaaactttaaaacgacgaggacgtctgcccaaggccagtctccatgaagctggtacaacacaactctatataatgtatgcatgttgaagcaccttcttggcattgagtcattgacaccttgaggcacctcctttctatcactgctccccagctagcaaatggcgaatggacactctacagaggatcaagagaaagtggaagaaaaaccactggagttactcttgcggaagtacctcttactgctggctattatggcagccacagtgacatatgccgcaggtttcaatccacccgggggtgtctggcaggataccgaggccgggcacctcgccggtgactccattatccgggatacctactacccccggtaccttgttttcttctactgcaatgcggctgcgttcgttttgtccattatagtcatcatcctcatcttgagccttgcaatcgcacaagagaagaaaaacttttggatccccatgcttccactgcgggtggccatggtgaaggatctgcttggccttgtgggggcctatgcagctgggaccagcagggccgtgctaaaacccaggaatgcttgggtgttggccgtcatttttgtctatatggtgatacaacttgtgctgacttcattgagcagctgcacaggtgatgctcttaactcttgcttgacagaaaccataaactgcctaatatggcagaggctaaatatgtaacccgtttccatttccttttaaagaaaagaaaccatagactgttcctaacataaccaggataatcacaaccaggtgatggcaaaaaggaggaagccaaggagcaactgcaaacagctgatggcaaagaggagaaaatcaataagctctcccaatcaggtcataagaaagaggaggaaaaagagcggcgccgcaagctcctactacttctcgctacatttgtgatgagcgtcacttacctggctgggttgagtgcaccctggtggctactgggacagcagcaaggagggacacaatgcaggcgacctggtcatgcgagagcaccat
More
|
||||||||||
| CDS seq | atggtgctctcgcatgaccaggtcgcctgcattgtgtccctccttgctgctgtcccagtagccaccagggtgcactcaacccagccaggcccccacaaggccaagcagatccttcaccatggccacccgcagtggaagcatggggatccaaaagtttttcttctcttgtgcgattgcaaggctcaagatgaggatgatgactataatggacaaaacgaacgcagccgcattgcagtagaagaaaacaaggtaccgggggtagtaggtatcccggataatggagtcaccggcgaggtgcccggcctcggtatcctgccagacacccccgggttaaaccctgcggcatatgtcaccatggccaccataatggccatcagcaagaggtcgaaagcttctatggcgaggaacggctaa
More
|
||||||||||
| Protein seq | MVLSHDQVACIVSLLAAVPVATRVHSTQPGPHKAKQILHHGHPQWKHGDPKVFLLLCDCKAQDEDDDYNGQNERSRIAVEENKVPGVVGIPDNGVTGEVPGLGILPDTPGLNPAAYVTMATIMAISKRSKASMARNG |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_06g0012370 | OsLiXu_06g0012370.01 | Chr06 | 10537683 | 10539985 | - | NAM | ||
| CDS seq | atggtgctctcgcatgaccaggtcgcctgcattgtgtccctccttgctgctgtcccagtagccaccagggtgcactcaacccagccaggcccccacaaggccaagcagatccttcaccatggccacccgcagtggaagcatggggatccaaaagtttttcttctcttgtgcgattgcaaggctcaagatgaggatgatgactataatggacaaaacgaacgcagccgcattgcagtagaagaaaacaaggtaccgggggtagtaggtatcccggataatggagtcaccggcgaggtgcccggcctcggtatcctgccagacacccccgggttaaaccctgcggcatatgtcaccatggccaccataatggccatcagcaagaggtcgaaagcttctatggcgaggaacggctaa
More
|
|||||||
| Protein seq | MVLSHDQVACIVSLLAAVPVATRVHSTQPGPHKAKQILHHGHPQWKHGDPKVFLLLCDCKAQDEDDDYNGQNERSRIAVEENKVPGVVGIPDNGVTGEVPGLGILPDTPGLNPAAYVTMATIMAISKRSKASMARNG |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0296750 | SBH | 0.000000 | 0.278799 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0296750 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0012160 | SBH | 0.0 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0012050 | RBH | 0.000000 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0012110 | SBH | 0.0 | 0.000000 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0012100 | SBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0012240 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0178700 | SBH | 1.817232 | 11.724913 | 8.931669 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0011720 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0174000 | SBH | 0.8522205 | 3.1126805 | 4.223345 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0012250 | SBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0012140 | RBH | 0.046950 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0011960 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0031840 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0012050 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G011850 | SBH | 0.000000 | 0.000000 | 0.250925 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
