Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_06g0004980 | OGI:06010070 | 15/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr06:3388789-3393681 | ||||||||
| Gene Symbol | RLCK200, OsRLCK200, PTK7, OsPTK7 | ||||||||||
| DNA seq | cacagttggaaagcatcaaccggatgatcagcccttgtcagaaaaataagttgttattacacgttgcagccaaccacacgtacatgccgtttttcgcttgtgcaaccagccaccaaacacagtgttcggctgatcatctaataagcgagattagacatcagggggcgtcacatctccagggatttgaggattatcaagcctagtttcactatacaattaaaaccaaaacaaagcacccggaaatgaccttaaaaatcatcaaatttcgctgctttttagcagtggatccggccatcaccgacgtgcctttcctgcgatgaggaaaaaaaattacagttagcttcatttgctaatccaaaagtttcacatttttaatcattcatcacgttctagctgtgagtaaagacagttcattcttttttcgcgaatatgcaaaagatctacagaagaagtttacaaaagcaaaaacaactgcaaagcaaagagagcagagaaaacagttcattcttgcagttcaaacaaattgaggtcacttcagtgatgatgaattaattctttctttgttcagatgataactcaccacgctgagatgatcgaggtctatatgatgcagacgccatgtcatttaggtcctgcaacggcgtcaggtgcttgacaacttcatccattgtcggacgagacttggtgtcacggctgaggcagtggtagcagatctgagcaaccttctgcacccctcttactgaatagttcagccccaagcgaggatctacgagctggtagagccttcgccgatcacttagatacggcctcgcccatgccactaggttctgctccccagtaggctgcttcttgtccattgatcgtctaccggttaacatctcgagtaacactactccgaagctatatacatcgctcttggatgtcaagtgtcctgaaaagtgtactttaatgagatcttgaacatgtatgcttgtttctcagagggagaagtataatctgatgtttgacattactttgtttttattattttaagtttttatgaagccagaaaagatctcgtaggaagtaaacttgtgggatgcatacagcagtaatattgaaccagaaaggcagagtagaacatgtaataccaaactggttcctgctatccacgttttcaggttattccaatgaattcggataatcaaatcatgctacggaagagtgctccaagatgaatgttgtctgtatcattgtctaaacaaacaagccatttgttacttaagtaaaaatcatcagctgttacttggtgatcatgtctagatactgcagtttatacgtcatcagatggaatcccgaggcatcttaatattcaatctagtaggaatatcagtgtgatgaaattagaagcaaagatgtagatatcacaccctagaaactcacagaaacataataaaatactaactggtagattcgtattaaagaaaatttgattcaagtagacgacaaaaaaccaaaagtttccgtaaaatacctgtcattacatactcgggtgcagcataaccataggtaccgacaacccgtgtagagacatgagttttatcgccttgaggaccagctttcgctaacccaaaatctgaaagttttgcattgtactcctgtataagcagaatttccactgctgttagaatagcatgcaagaaataatcttgtgaaaatgtgcaacatatttatgagcatgatgtgaatgaattgataagaaatagtaccgcatcaagaagaatatttgatgtcttaaaatccctgtaaattactggtttgggacctccatggagaaaggctagccctttagcagcaccgagagcgatcttcattctacagggccaaggtaggggaagagccccttcaagattaaacaaagtaagataacaggaactttagattgggaaacaatttgaaggcattaccaatcaagaaacttacagaacaaagtacaattgttagacaaggatgacctaatagatcagggaacaccatatagatcatcgttaggccctctttgtttaggcttaggcctagccaattttttggcttatatgttttataagctggtggctttgaagccttaagtttaatggtgaagtcatacctccacttcacataagccaaaaaagctactgcaacctagtttgtggcttaatagtgtaagagtggcttatgtccttaaaaaaccaaacagacaagctgcttatctgtttaggtttagacttttaggctcataagctggcgtataagcctaaacaaagagggcgtgtaaggataaacaggtcctagttttcaatgaactgttaacaattcaatggacaacacctagaaatgatattgttgaggtcaagtcttggtgttcaataaggcaagtcaacaacagcttttctaaaagagtattgtactacttattctaaaacagccctgcatgcattatcaccttggaagaaaaaagagtaaataaacaaagggtcactttcaaccattgttgctccttttgggagaagctactagtttctataaagcagtttaattacttcactacatcaagaaatatttctcaagacatgacaatatctaaatgtttcaattacatgattcatttTAttttaggacaaaaggatgtactaacacattggcatatgaaagtattcatatagtatatattttgcatgaattaaaaatgtgatgccaatcttatttgaattaaaaagAaatactaatgcatgtatttgattgtttacttctgaaaagatggttgtaaagattgcttacttctgaaaagatggttttcaagacttccccgggccatgaattcatatacaagcaacctttggtcatcctcgatacagtatccaatcagcttaacaaggtgtttgtgatgcagctgtcccagaaagtcaacttccgcctgcaaatacggtatgtttgtaagttataactctacctacacaaacacatgtacaggacaagcacatacttaccacccattctctgtgaccttgaagtgcatcctgcttcaaacttttgacagcaactgtaagaccagtaccgggttttgcaggagatgtgctgtttggatcaatccatcctttgaatacatacccaaacccaccttctccaagaatactatctggcctaaagttaacagtggcagatttcaactcttggaaagtaaactgaagaagtttcttttcagttgatgcatttacaccattttcatcatcaaggtttgtctgaaaatgatcaccaagctctcgattgctagcatttagatatctggtctctgctgttatagagaaaaacaaaatgcttgagcacctcacccaaaaactgaaaaattcaacaacagaaagtacttagtagatatcatggctatatacccaaactgtcctttgaaagccaaattaagcttgaaagaataagccaagatagaatattgtaagggcaatagttattagctcttggttaagtaagttgatagacattgatccaagatttattatatgatgggcatactcctaaccaaTttttaatacaggaagaaaacctaccaagttgacttgaaataccatcagtgtgtgtttcttatgttatccaggttattattttgaaagtactactattcagcttaatcatttcccgtctctcaaggtcagcaaaaatgatcagcatgacattagaaagaaacacagcaggatgtattttgctcctgaataaaaggataaacgatttgtttcatgcttctgtcatatttacaacaacccttcttcagctatcacaaggataagaaaaatcccatttgacagacagtttaaatgtataccataaagagttgcttagcacggtatgatagaaagatgagcaaaacccattcatcctcttattgttattgaaacatgctaatccgaagaacacataacaacataaaacatgtctttttgttacgaacatggcaacagctaacaacatgcgaacactctcattgaaatctgaagaacacacggtgctaagataattctgatcaagctcatatagatgcaatgttccctagcacaagctttttaagattatgacactcaagcctgtaagaaatcattgctgtatgcctgtaccaccatgaatagcccttacagcactactataggcatgatccgttccatctcagataaaacagcaaaacagtatccaatttccgtttactctgaatctgtatcccaagttccaatttctcattataacatccaaaattcccacgtatattacatcactgacagtactaagcactaatcatccgatcaaatacacaacagatcagtccccagtgaacacgaccagaatttcccagaaacagaaaagtttcccctttcgatgaacatcaatcacatcgccgcaacaatagccaagcaaaaatatccaaccactagagaacaaacaagcaaaatcacccccccccccacagaaccaaacaaaaacaaaagaagatcccAaaACTCACCAACCAGCTACAAACAAAAATCAAGAAGAAGGAAaaaaaagggagagcaaagaagaagccaacctgcgtcgtggacgtggctccccttggcggagccccccgccgcgcccttctcgtcggcccccgacgccgccgccgccgcccccgccggccggaagcatgccccacgtagcccccgcgccaccgccgcccagcacccgcacccgcgctcctccctccgccgggaaggcatctcttcttgcaggcccaaaatcggagctaaaaacaaacaaagaaccgcttcttgctgatgctagctagctaacctcgagtcctaccggcgctgaatccatcgagagctcgagatgaccggttcttgggcttcttcttct
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| CDS seq | atgccttcccggcggagggaggagcgcgggtgcgggtgctgggcggcggtggcgcgggggctacgtggggcatgcttccggccggcgggggcggcggcggcggcgtcgggggccgacgagaagggcgcggcggggggctccgccaaggggagccacgtccacgacgcagcagagaccagatatctaaatgctagcaatcgagagcttggtgatcattttcagacaaaccttgatgatgaaaatggtgtaaatgcatcaactgaaaagaaacttcttcagtttactttccaagagttgaaatctgccactgttaactttaggccagatagtattcttggagaaggtgggtttgggtatgtattcaaaggatggattgatccaaacagcacatctcctgcaaaacccggtactggtcttacagttgctgtcaaaagtttgaagcaggatgcacttcaaggtcacagagaatgggtggcggaagttgactttctgggacagctgcatcacaaacaccttgttaagctgattggatactgtatcgaggatgaccaaaggttgcttgtatatgaattcatggcccggggaagtcttgaaaaccatcttttcagaagggctcttcccctaccttggccctgtagaatgaagatcgctctcggtgctgctaaagggctagcctttctccatggaggtcccaaaccagtaatttacagggattttaagacatcaaatattcttcttgatgcggagtacaatgcaaaactttcagattttgggttagcgaaagctggtcctcaaggcgataaaactcatgtctctacacgggttgtcggtacctatggttatgctgcacccgagtatgtaatgacaggacacttgacatccaagagcgatgtatatagcttcggagtagtgttactcgagatgttaaccggtagacgatcaatggacaagaagcagcctactggggagcagaacctagtggcatgggcgaggccgtatctaagtgatcggcgaaggctctaccagctcgtagatcctcgcttggggctgaactattcagtaagaggggtgcagaaggttgctcagatctgctaccactgcctcagccgtgacaccaagtctcgtccgacaatggatgaagttgtcaagcacctgacgccgttgcaggacctaaatgacatggcgtctgcatcatatagacctcgatcatctcagcgtggaaaggcacgtcggtga
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| Protein seq | MPSRRREERGCGCWAAVARGLRGACFRPAGAAAAASGADEKGAAGGSAKGSHVHDAAETRYLNASNRELGDHFQTNLDDENGVNASTEKKLLQFTFQELKSATVNFRPDSILGEGGFGYVFKGWIDPNSTSPAKPGTGLTVAVKSLKQDALQGHREWVAEVDFLGQLHHKHLVKLIGYCIEDDQRLLVYEFMARGSLENHLFRRALPLPWPCRMKIALGAAKGLAFLHGGPKPVIYRDFKTSNILLDAEYNAKLSDFGLAKAGPQGDKTHVSTRVVGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKKQPTGEQNLVAWARPYLSDRRRLYQLVDPRLGLNYSVRGVQKVAQICYHCLSRDTKSRPTMDEVVKHLTPLQDLNDMASASYRPRSSQRGKARR |
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| Function | Probable serine/threonine-protein kinase PIX7 [UniProtKB/Swiss-Prot:Q9LFP7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_06g0004980 | OsLiXu_06g0004980.01 | Chr06 | 3388820 | 3393681 | - | NAM | ||
| CDS seq | atgccttcccggcggagggaggagcgcgggtgcgggtgctgggcggcggtggcgcgggggctacgtggggcatgcttccggccggcgggggcggcggcggcggcgtcgggggccgacgagaagggcgcggcggggggctccgccaaggggagccacgtccacgacgcagcagagaccagatatctaaatgctagcaatcgagagcttggtgatcattttcagacaaaccttgatgatgaaaatggtgtaaatgcatcaactgaaaagaaacttcttcagtttactttccaagagttgaaatctgccactgttaactttaggccagatagtattcttggagaaggtgggtttgggtatgtattcaaaggatggattgatccaaacagcacatctcctgcaaaacccggtactggtcttacagttgctgtcaaaagtttgaagcaggatgcacttcaaggtcacagagaatgggtggcggaagttgactttctgggacagctgcatcacaaacaccttgttaagctgattggatactgtatcgaggatgaccaaaggttgcttgtatatgaattcatggcccggggaagtcttgaaaaccatcttttcagaagggctcttcccctaccttggccctgtagaatgaagatcgctctcggtgctgctaaagggctagcctttctccatggaggtcccaaaccagtaatttacagggattttaagacatcaaatattcttcttgatgcggagtacaatgcaaaactttcagattttgggttagcgaaagctggtcctcaaggcgataaaactcatgtctctacacgggttgtcggtacctatggttatgctgcacccgagtatgtaatgacaggacacttgacatccaagagcgatgtatatagcttcggagtagtgttactcgagatgttaaccggtagacgatcaatggacaagaagcagcctactggggagcagaacctagtggcatgggcgaggccgtatctaagtgatcggcgaaggctctaccagctcgtagatcctcgcttggggctgaactattcagtaagaggggtgcagaaggttgctcagatctgctaccactgcctcagccgtgacaccaagtctcgtccgacaatggatgaagttgtcaagcacctgacgccgttgcaggacctaaatgacatggcgtctgcatcatatagacctcgatcatctcagcgtggaaaggcacgtcggtga
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| Protein seq | MPSRRREERGCGCWAAVARGLRGACFRPAGAAAAASGADEKGAAGGSAKGSHVHDAAETRYLNASNRELGDHFQTNLDDENGVNASTEKKLLQFTFQELKSATVNFRPDSILGEGGFGYVFKGWIDPNSTSPAKPGTGLTVAVKSLKQDALQGHREWVAEVDFLGQLHHKHLVKLIGYCIEDDQRLLVYEFMARGSLENHLFRRALPLPWPCRMKIALGAAKGLAFLHGGPKPVIYRDFKTSNILLDAEYNAKLSDFGLAKAGPQGDKTHVSTRVVGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKKQPTGEQNLVAWARPYLSDRRRLYQLVDPRLGLNYSVRGVQKVAQICYHCLSRDTKSRPTMDEVVKHLTPLQDLNDMASASYRPRSSQRGKARR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_06g0004980 | OsLiXu_06g0004980.02 | Chr06 | 3388820 | 3393681 | - | NAM | ||
| CDS seq | atgcttccggccggcgggggcggcggcggcggcgtcgggggccgacgagaagggcgcggcggggggctccgccaaggggagccacgtccacgacgcagtttttgggtgaggtgctcaagcattttgtttttctctataacagcagagaccagatatctaaatgctagcaatcgagagcttggtgatcattttcagacaaaccttgatgatgaaaatggtgtaaatgcatcaactgaaaagaaacttcttcagtttactttccaagagttgaaatctgccactgttaactttaggccagatagtattcttggagaaggtgggtttgggtatgtattcaaaggatggattgatccaaacagcacatctcctgcaaaacccggtactggtcttacagttgctgtcaaaagtttgaagcaggatgcacttcaaggtcacagagaatgggtggcggaagttgactttctgggacagctgcatcacaaacaccttgttaagctgattggatactgtatcgaggatgaccaaaggttgcttgtatatgaattcatggcccggggaagtcttgaaaaccatcttttcagaagggctcttcccctaccttggccctgtagaatgaagatcgctctcggtgctgctaaagggctagcctttctccatggaggtcccaaaccagtaatttacagggattttaagacatcaaatattcttcttgatgcggagtacaatgcaaaactttcagattttgggttagcgaaagctggtcctcaaggcgataaaactcatgtctctacacgggttgtcggtacctatggttatgctgcacccgagtatgtaatgacaggacacttgacatccaagagcgatgtatatagcttcggagtagtgttactcgagatgttaaccggtagacgatcaatggacaagaagcagcctactggggagcagaacctagtggcatgggcgaggccgtatctaagtgatcggcgaaggctctaccagctcgtagatcctcgcttggggctgaactattcagtaagaggggtgcagaaggttgctcagatctgctaccactgcctcagccgtgacaccaagtctcgtccgacaatggatgaagttgtcaagcacctgacgccgttgcaggacctaaatgacatggcgtctgcatcatatagacctcgatcatctcagcgtggaaaggcacgtcggtga
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| Protein seq | MLPAGGGGGGGVGGRREGRGGGLRQGEPRPRRSFWVRCSSILFFSITAETRYLNASNRELGDHFQTNLDDENGVNASTEKKLLQFTFQELKSATVNFRPDSILGEGGFGYVFKGWIDPNSTSPAKPGTGLTVAVKSLKQDALQGHREWVAEVDFLGQLHHKHLVKLIGYCIEDDQRLLVYEFMARGSLENHLFRRALPLPWPCRMKIALGAAKGLAFLHGGPKPVIYRDFKTSNILLDAEYNAKLSDFGLAKAGPQGDKTHVSTRVVGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKKQPTGEQNLVAWARPYLSDRRRLYQLVDPRLGLNYSVRGVQKVAQICYHCLSRDTKSRPTMDEVVKHLTPLQDLNDMASASYRPRSSQRGKARR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_06g0004980 | OsLiXu_06g0004980.03 | Chr06 | 3388789 | 3388929 | - | IsoSeq | ||
| CDS seq | ttagatgatcagccgaacactgtgtttggtggctggttgcacaagcgaaaaacggcatgtacgtgtggttggctgcaacgtgtaataacaacttatttttctgacaag |
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| Protein seq | LDDQPNTVFGGWLHKRKTACTCGWLQRVITTYFSDK |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr06 | 3392101 | 3393374 | - | OsLiXu_06g0004980.02 | OsLiXu_06g0004980.02,OsLiXu_06g0004980.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.394941 | 0.363450 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0168800 | RBH | 1.971145 | 3.337959 | 2.997881 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g07230 | RBH | 1.287349 | 1.481814 | 0.718829 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0168800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0005050 | RBH | 0.888764 | 11.869271 | 3.574007 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0004970 | RBH | 0.594210 | 1.110136 | 0.873579 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0004910 | RBH | 2.520297 | 8.321105 | 3.152561 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0005100 | RBH | 0.244125 | 0.157831 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0004980 | RBH | 4.226103 | 6.702151 | 14.396273 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0087200 | SBH | 7.860795 | 123.098206 | 0.934802 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0004850 | RBH | 0.743198 | 0.557015 | 0.966523 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0059500 | RBH | 1.982222 | 13.794387 | 2.176004 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0005090 | RBH | 0.163588 | 0.100379 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0004940 | RBH | 0.380338 | 10.263547 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0004950 | RBH | 0.973042 | 14.189179 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0027200 | RBH | 1.501285 | 0.0 | 0.698419 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0004850 | RBH | 0.753689 | 5.370199 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G004730 | RBH | 1.332463 | 2.127119 | 1.947849 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0005010 | RBH | 2.504091 | 20.185192 | 7.077225 |
