Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_06g0004970 | OGI:06010060 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr06:3384143-3385138 | ||||||||
| Gene Symbol | OsHyPRP17, HyPRP17 | ||||||||||
| DNA seq | taagtcggatcttttctcgtggattaattaattaaactacacttggattaaaaccggaggtagtacattaatacaacacaaattgcagacacgagtacgatcgagagagtaaaggtagcacagtatagctagctagcgagggtgtagtatagtagcctccgccattgacgacgacgacgaagctttgctagctgctgcttggtttgttcagttcaggcgccgtagagcggggggcacttgaagccgggaggcgggtgcttgccgcaggtgatgagcagctcgagcgcgacggggaggtagatgttgatgttgaggaggcgcgcgcggatggtggtgcagaggcagagcgcggcgtccaggtccgccacgccctgcaccagcgggcagcacttcgccctcgccttctgcccgatcaccaggtggatcagCccccccagcacgtccacgcacgcgttcagcttcagcgcgtcgatcgggcacgtcttcgtcgccggcgggctcggcggcggcacgtacggcggcggcgacggcggcacgtatggcggaggagacggcggcgtcggcggcgggacgtacggcggcgtcggcggcgggatgtagggtggaacgtatggcggcgtcggcggcggaatgtagggtggaacgtatggcggcgtcggcggcgggatgtagggtggcacgtatggtggtggagatggaacgtacggcggagttggcggcggccgtggcgtcggcggcgtgtagggcgggtggcacgacgggcaccggggagacgggggaggtttgtggtggtggtggtgctcgggcggcttgccgtggtgaccgccgccgccgctgccgctaccgggcggcttgccgtggtggccgccgccgctgctgccgctaccgggaggcgggcagtctttgttccagccgtgggcgacggagacgaggacgacgagcaggaaagacacgacggtggcgagcgccgcagccatggatgctggtggcgcggct
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| CDS seq | atggctgcggcgctcgccaccgtcgtgtctttcctgctcgtcgtcctcgtctccgtcgcccacggctggaacaaagactgcccgcctcccggtagcggcagcagcggcggcggccaccacggcaagccgcccggtagcggcagcggcggcggcggtcaccacggcaagccgcccgagcaccaccaccaccacaaacctcccccgtctccccggtgcccgtcgtgccacccgccctacacgccgccgacgccacggccgccgccaactccgccgtacgttccatctccaccaccatacgtgccaccctacatcccgccgccgacgccgccatacgttccaccctacattccgccgccgacgccgccatacgttccaccctacatcccgccgccgacgccgccgtacgtcccgccgccgacgccgccgtctcctccgccatacgtgccgccgtcgccgccgccgtacgtgccgccgccgagcccgccggcgacgaagacgtgcccgatcgacgcgctgaagctgaacgcgtgcgtggacgtgctggggggGctgatccacctggtgatcgggcagaaggcgagggcgaagtgctgcccgctggtgcagggcgtggcggacctggacgccgcgctctgcctctgcaccaccatccgcgcgcgcctcctcaacatcaacatctacctccccgtcgcgctcgagctgctcatcacctgcggcaagcacccgcctcccggcttcaagtgccccccgctctacggcgcctga
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| Protein seq | MAAALATVVSFLLVVLVSVAHGWNKDCPPPGSGSSGGGHHGKPPGSGSGGGGHHGKPPEHHHHHKPPPSPRCPSCHPPYTPPTPRPPPTPPYVPSPPPYVPPYIPPPTPPYVPPYIPPPTPPYVPPYIPPPTPPYVPPPTPPSPPPYVPPSPPPYVPPPSPPATKTCPIDALKLNACVDVLGGLIHLVIGQKARAKCCPLVQGVADLDAALCLCTTIRARLLNINIYLPVALELLITCGKHPPPGFKCPPLYGA |
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| Function | 36.4 kDa proline-rich protein [UniProtKB/Swiss-Prot:Q00451] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_06g0004970 | OsLiXu_06g0004970.01 | Chr06 | 3384143 | 3385138 | - | NAM | ||
| CDS seq | atggctgcggcgctcgccaccgtcgtgtctttcctgctcgtcgtcctcgtctccgtcgcccacggctggaacaaagactgcccgcctcccggtagcggcagcagcggcggcggccaccacggcaagccgcccggtagcggcagcggcggcggcggtcaccacggcaagccgcccgagcaccaccaccaccacaaacctcccccgtctccccggtgcccgtcgtgccacccgccctacacgccgccgacgccacggccgccgccaactccgccgtacgttccatctccaccaccatacgtgccaccctacatcccgccgccgacgccgccatacgttccaccctacattccgccgccgacgccgccatacgttccaccctacatcccgccgccgacgccgccgtacgtcccgccgccgacgccgccgtctcctccgccatacgtgccgccgtcgccgccgccgtacgtgccgccgccgagcccgccggcgacgaagacgtgcccgatcgacgcgctgaagctgaacgcgtgcgtggacgtgctggggggGctgatccacctggtgatcgggcagaaggcgagggcgaagtgctgcccgctggtgcagggcgtggcggacctggacgccgcgctctgcctctgcaccaccatccgcgcgcgcctcctcaacatcaacatctacctccccgtcgcgctcgagctgctcatcacctgcggcaagcacccgcctcccggcttcaagtgccccccgctctacggcgcctga
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| Protein seq | MAAALATVVSFLLVVLVSVAHGWNKDCPPPGSGSSGGGHHGKPPGSGSGGGGHHGKPPEHHHHHKPPPSPRCPSCHPPYTPPTPRPPPTPPYVPSPPPYVPPYIPPPTPPYVPPYIPPPTPPYVPPYIPPPTPPYVPPPTPPSPPPYVPPSPPPYVPPPSPPATKTCPIDALKLNACVDVLGGLIHLVIGQKARAKCCPLVQGVADLDAALCLCTTIRARLLNINIYLPVALELLITCGKHPPPGFKCPPLYGA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.738174 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0168700 | RBH | 0.0 | 0.0 | 2.057887 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g07220 | RBH | 0.0 | 0.0 | 0.496846 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0168700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0005040 | RBH | 0.0 | 1.889637 | 2.304485 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0004960 | SBH | 0.0 | 0.000000 | 0.133490 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0004900 | SBH | 0.0 | 0.0 | 0.554057 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0005090 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0004970 | SBH | 0.0 | 2.889624 | 5.649244 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0060000 | SBH | 1.1551525 | 0.6367265 | 35.9191845 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0004840 | SBH | 0.0 | 0.0 | 0.102792 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0059400 | RBH | 1.750619 | 0.00623 | 8.187517 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0005080 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0004930 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0004940 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0027190 | RBH | 0.0 | 0.0 | 0.246018 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0004840 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G004720 | SBH | 0.0 | 0.0 | 0.307756 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0005000 | SBH | 0.0 | 0.0 | 4.080043 |
