Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_06g0004730 | OGI:06009610 | 13/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr06:3223739-3226150 | ||||||||
| Gene Symbol | SDRLK-66 | ||||||||||
| DNA seq | ttattccataagtgaaagtaggatttcgaccacactgttcatgcttggtcttttgcgcctatcttcatccagacatgacactgctgtatttagcactaaggctgcctgtgaataattgaattctccattcagcctgcagtcaacaaaatccagcagccatgattgatccccactagctaatttctctttgagaatatcaacagttcgtttaacagccagttccacctcctcctcaccatcaaccacccatctagaaaccctattccctttcactaactcaagaagcactactccatagctgtaaacatcagccttgcctgtgatcggaagatttagagcccactctggcgcaatgtaccctcttgtcccatgcactcgtgataggatatttgtgcttggtcctcgattcagtaatttcaccaatccaaaatccacaatctttggctcaaaatctttatctaacaatatgttctctggtttaacatcgcaatgcacgatccattccagacattcatggtgtagataagccaatccttttgctaccccaagtgcgatattgtacctttggctccacggtagcacaggaaacacgctctgatggttggataaaactctgtctaaagagccattctcaacaaactcagaaaccaagagcttgtgcgtcttttcggcacaaaacccccaaattctgacaaggttcatatgataaactcgtcctatgatactcagctctgacctgaactcctgttctccgtggatcacatcatttagtttcttcaccgcgaccttcctattatcatcgaggattcccttgtaaactgctcctgatcctccacttcctagttcttcttgaaaaaatccggttgccttctctaactccttgtaactgaaccttcggaattgactggaaattatggtgtagccttcgtctcgaatctctggtcttcttccccatttgtatgtagcccaacatccaactgtaactaaaatcacttcaactacaagcaatgtcaatgctgaagaaaggaagtatccaaacttgaatttcgaattgctaccctcgaacatttgcgatgaaggataggcgtctttttctgttaccttgcagatatgggatggtttagaagccaatagttgtgaagacgacgcctccttggaaaattttagataaatatcattgctaggatctgggaatttcttgccattgataagcaaagccttcgggaaacattcaccttttcccttccgatatgcaaaagcttcgcagccatcatcgttcaagcaaatctgtttgcagactggcaatgcgacagatggggtgtagttgaagtcatacccatagaagtcagtcttggggatctccacgaatatgaatttttgctctgtattgttgtttgcgttatgatcccctttgactgtgatgttttccttgcgcctgcacccttggctccagtcactaggttcagtcatctcgaaaccttcgaggcaggaacactgaaggcttggcatgtatgtgcagaagctgtttatgccacacagaccatgtatctcacagagtcgagggaatgccagccaagagactgaccatttaccattcgttgcgtttaagctatatagccttaggttaccatcataatcgagtgtcaacctcctcatgacatccttatcaccaagatcagacgcttcaaattgaagcttgtcactagctaagaacatgccttcctgattgagaatcccatattggctgctgttataagtagtcctaccattctcccacgaccgctcataaggattaggccaatatatgctgctagtctcagggccattgtatatgatactcaatatgttgttactgtcaaagaagaaggtgtacaagcctgagtaaggcaagcccctggcagatgcagattccagctttgtatctcgagtcatcggctgcaatgggaggagcgtgtcggtcggtgaatcgaagctcttccagaggcgatgaccggctggatccatgacgacgaggttgccgctgtcgtcaagctctgcacggctagcgccagtggccgtggtgttggtgctccacacaaccgtgccgttgtaatcaacaagggccaggctcccgtccttccggaaggtgagcttggagcccttgccgttcaccggagcgtcgcggttcgccgtccacgcgacggtcttctccgacgacctggagaaccagatggagaaggtgaaggcgttggtggccaccttgtagaagccacatgagaagtggccattgggggacacaaggatggtggtggtgtcatcttgggtggagattgaggaaccccttgcaagggagcttctctgatcttctgcaagagcaatggtgagcgcgagaaggaaggagatcgatgtggtgaaaatgctgacgcctctcat
More
|
||||||||||
| CDS seq | atgagaggcgtcagcattttcaccacatcgatctccttccttctcgcgctcaccattgctcttgcagaagatcagagaagctcccttgcaaggggttcctcaatctccacccaagatgacaccaccaccatccttgtgtcccccaatggccacttctcatgtggcttctacaaggtggccaccaacgccttcaccttctccatctggttctccaggtcgtcggagaagaccgtcgcgtggacggcgaaccgcgacgctccggtgaacggcaagggctccaagctcaccttccggaaggacgggagcctggcccttgttgattacaacggcacggttgtgtggagcaccaacaccacggccactggcgctagccgtgcagagcttgacgacagcggcaacctcgtcgtcatggatccagccggtcatcgcctctggaagagcttcgattcaccgaccgacacgctcctcccattgcagccgatgactcgagatacaaagctggaatctgcatctgccaggggcttgccttactcaggcttgtacaccttcttctttgacagtaacaacatattgagtatcatatacaatggccctgagactagcagcatatattggcctaatccttatgagcggtcgtgggagaatggtaggactacttataacagcagccaatatgggattctcaatcaggaaggcatgttcttagctagtgacaagcttcaatttgaagcgtctgatcttggtgataaggatgtcatgaggaggttgacactcgattatgatggtaacctaaggctatatagcttaaacgcaacgaatggtaaatggtcagtctcttggctggcattccctcgactctgtgagatacatggtctgtgtggcataaacagcttctgcacatacatgccaagccttcagtgttcctgcctcgaaggtttcgagatgactgaacctagtgactggagccaagggtgcaggcgcaaggaaaacatcacagtcaaaggggatcataacgcaaacaacaatacagagcaaaaattcatattcgtggagatccccaagactgacttctatgggtatgacttcaactacaccccatctgtcgcattgccagtctgcaaacagatttgcttgaacgatgatggctgcgaagcttttgcatatcggaagggaaaaggtgaatgtttcccgaaggctttgcttatcaatggcaagaaattcccagatcctagcaatgatatttatctaaaattttccaaggaggcgtcgtcttcacaactattggcttctaaaccatcccatatctgcaaggtaacagaaaaagacgcctatccttcatcgcaaatgttcgagggtagcaattcgaaattcaagtttggatacttcctttcttcagcattgacattgcttgtagttgaagtgattttagttacagttggatgttgggctacatacaaatggggaagaagaccagagattcgagacgaaggctacaccataatttccagtcaattccgaaggttcagttacaaggagttagagaaggcaaccggattttttcaagaagaactaggaagtggaggatcaggagcagtttacaagggaatcctcgatgataataggaaggtcgcggtgaagaaactaaatgatgtgatccacggagaacaggagttcaggtcagagctgagtatcataggacgagtttatcatatgaaccttgtcagaatttgggggttttgtgccgaaaagacgcacaagctcttggtttctgagtttgttgagaatggctctttagacagagttttatccaaccatcagagcgtgtttcctgtgctaccgtggagccaaaggtacaatatcgcacttggggtagcaaaaggattggcttatctacaccatgaatgtctggaatggatcgtgcattgcgatgttaaaccagagaacatattgttagataaagattttgagccaaagattgtggattttggattggtgaaattactgaatcgaggaccaagcacaaatatcctatcacgagtgcatgggacaagagggtacattgcgccagagtgggctctaaatcttccgatcacaggcaaggctgatgtttacagctatggagtagtgcttcttgagttagtgaaagggaatagggtttctagatgggtggttgatggtgaggaggaggtggaactggctgttaaacgaactgttgatattctcaaagagaaattagctagtggggatcaatcatggctgctggattttgttgactgcaggctgaatggagaattcaattattcacaggcagccttagtgctaaatacagcagtgtcatgtctggatgaagataggcgcaaaagaccaagcatgaacagtgtggtcgaaatcctactttcacttatggaataa
More
|
||||||||||
| Protein seq | MRGVSIFTTSISFLLALTIALAEDQRSSLARGSSISTQDDTTTILVSPNGHFSCGFYKVATNAFTFSIWFSRSSEKTVAWTANRDAPVNGKGSKLTFRKDGSLALVDYNGTVVWSTNTTATGASRAELDDSGNLVVMDPAGHRLWKSFDSPTDTLLPLQPMTRDTKLESASARGLPYSGLYTFFFDSNNILSIIYNGPETSSIYWPNPYERSWENGRTTYNSSQYGILNQEGMFLASDKLQFEASDLGDKDVMRRLTLDYDGNLRLYSLNATNGKWSVSWLAFPRLCEIHGLCGINSFCTYMPSLQCSCLEGFEMTEPSDWSQGCRRKENITVKGDHNANNNTEQKFIFVEIPKTDFYGYDFNYTPSVALPVCKQICLNDDGCEAFAYRKGKGECFPKALLINGKKFPDPSNDIYLKFSKEASSSQLLASKPSHICKVTEKDAYPSSQMFEGSNSKFKFGYFLSSALTLLVVEVILVTVGCWATYKWGRRPEIRDEGYTIISSQFRRFSYKELEKATGFFQEELGSGGSGAVYKGILDDNRKVAVKKLNDVIHGEQEFRSELSIIGRVYHMNLVRIWGFCAEKTHKLLVSEFVENGSLDRVLSNHQSVFPVLPWSQRYNIALGVAKGLAYLHHECLEWIVHCDVKPENILLDKDFEPKIVDFGLVKLLNRGPSTNILSRVHGTRGYIAPEWALNLPITGKADVYSYGVVLLELVKGNRVSRWVVDGEEEVELAVKRTVDILKEKLASGDQSWLLDFVDCRLNGEFNYSQAALVLNTAVSCLDEDRRKRPSMNSVVEILLSLME |
||||||||||
| Function | Putative receptor protein kinase ZmPK1 [UniProtKB/Swiss-Prot:P17801] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_06g0004730 | OsLiXu_06g0004730.01 | Chr06 | 3223739 | 3226150 | - | NAM | ||
| CDS seq | atgagaggcgtcagcattttcaccacatcgatctccttccttctcgcgctcaccattgctcttgcagaagatcagagaagctcccttgcaaggggttcctcaatctccacccaagatgacaccaccaccatccttgtgtcccccaatggccacttctcatgtggcttctacaaggtggccaccaacgccttcaccttctccatctggttctccaggtcgtcggagaagaccgtcgcgtggacggcgaaccgcgacgctccggtgaacggcaagggctccaagctcaccttccggaaggacgggagcctggcccttgttgattacaacggcacggttgtgtggagcaccaacaccacggccactggcgctagccgtgcagagcttgacgacagcggcaacctcgtcgtcatggatccagccggtcatcgcctctggaagagcttcgattcaccgaccgacacgctcctcccattgcagccgatgactcgagatacaaagctggaatctgcatctgccaggggcttgccttactcaggcttgtacaccttcttctttgacagtaacaacatattgagtatcatatacaatggccctgagactagcagcatatattggcctaatccttatgagcggtcgtgggagaatggtaggactacttataacagcagccaatatgggattctcaatcaggaaggcatgttcttagctagtgacaagcttcaatttgaagcgtctgatcttggtgataaggatgtcatgaggaggttgacactcgattatgatggtaacctaaggctatatagcttaaacgcaacgaatggtaaatggtcagtctcttggctggcattccctcgactctgtgagatacatggtctgtgtggcataaacagcttctgcacatacatgccaagccttcagtgttcctgcctcgaaggtttcgagatgactgaacctagtgactggagccaagggtgcaggcgcaaggaaaacatcacagtcaaaggggatcataacgcaaacaacaatacagagcaaaaattcatattcgtggagatccccaagactgacttctatgggtatgacttcaactacaccccatctgtcgcattgccagtctgcaaacagatttgcttgaacgatgatggctgcgaagcttttgcatatcggaagggaaaaggtgaatgtttcccgaaggctttgcttatcaatggcaagaaattcccagatcctagcaatgatatttatctaaaattttccaaggaggcgtcgtcttcacaactattggcttctaaaccatcccatatctgcaaggtaacagaaaaagacgcctatccttcatcgcaaatgttcgagggtagcaattcgaaattcaagtttggatacttcctttcttcagcattgacattgcttgtagttgaagtgattttagttacagttggatgttgggctacatacaaatggggaagaagaccagagattcgagacgaaggctacaccataatttccagtcaattccgaaggttcagttacaaggagttagagaaggcaaccggattttttcaagaagaactaggaagtggaggatcaggagcagtttacaagggaatcctcgatgataataggaaggtcgcggtgaagaaactaaatgatgtgatccacggagaacaggagttcaggtcagagctgagtatcataggacgagtttatcatatgaaccttgtcagaatttgggggttttgtgccgaaaagacgcacaagctcttggtttctgagtttgttgagaatggctctttagacagagttttatccaaccatcagagcgtgtttcctgtgctaccgtggagccaaaggtacaatatcgcacttggggtagcaaaaggattggcttatctacaccatgaatgtctggaatggatcgtgcattgcgatgttaaaccagagaacatattgttagataaagattttgagccaaagattgtggattttggattggtgaaattactgaatcgaggaccaagcacaaatatcctatcacgagtgcatgggacaagagggtacattgcgccagagtgggctctaaatcttccgatcacaggcaaggctgatgtttacagctatggagtagtgcttcttgagttagtgaaagggaatagggtttctagatgggtggttgatggtgaggaggaggtggaactggctgttaaacgaactgttgatattctcaaagagaaattagctagtggggatcaatcatggctgctggattttgttgactgcaggctgaatggagaattcaattattcacaggcagccttagtgctaaatacagcagtgtcatgtctggatgaagataggcgcaaaagaccaagcatgaacagtgtggtcgaaatcctactttcacttatggaataa
More
|
|||||||
| Protein seq | MRGVSIFTTSISFLLALTIALAEDQRSSLARGSSISTQDDTTTILVSPNGHFSCGFYKVATNAFTFSIWFSRSSEKTVAWTANRDAPVNGKGSKLTFRKDGSLALVDYNGTVVWSTNTTATGASRAELDDSGNLVVMDPAGHRLWKSFDSPTDTLLPLQPMTRDTKLESASARGLPYSGLYTFFFDSNNILSIIYNGPETSSIYWPNPYERSWENGRTTYNSSQYGILNQEGMFLASDKLQFEASDLGDKDVMRRLTLDYDGNLRLYSLNATNGKWSVSWLAFPRLCEIHGLCGINSFCTYMPSLQCSCLEGFEMTEPSDWSQGCRRKENITVKGDHNANNNTEQKFIFVEIPKTDFYGYDFNYTPSVALPVCKQICLNDDGCEAFAYRKGKGECFPKALLINGKKFPDPSNDIYLKFSKEASSSQLLASKPSHICKVTEKDAYPSSQMFEGSNSKFKFGYFLSSALTLLVVEVILVTVGCWATYKWGRRPEIRDEGYTIISSQFRRFSYKELEKATGFFQEELGSGGSGAVYKGILDDNRKVAVKKLNDVIHGEQEFRSELSIIGRVYHMNLVRIWGFCAEKTHKLLVSEFVENGSLDRVLSNHQSVFPVLPWSQRYNIALGVAKGLAYLHHECLEWIVHCDVKPENILLDKDFEPKIVDFGLVKLLNRGPSTNILSRVHGTRGYIAPEWALNLPITGKADVYSYGVVLLELVKGNRVSRWVVDGEEEVELAVKRTVDILKEKLASGDQSWLLDFVDCRLNGEFNYSQAALVLNTAVSCLDEDRRKRPSMNSVVEILLSLME
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.004133 | 0.098756 | 0.158651 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0165500 | SBH | 1.218456 | 0.482138 | 0.322263 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g06940 | RBH | 0.079414 | 0.352107 | 0.065397 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0165500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0004800 | SBH | 0.0 | 0.365867 | 0.074983 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0004730 | RBH | 0.0 | 0.433506 | 0.271216 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0004640 | SBH | 0.123807 | 1.757458 | 0.097482 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0004840 | RBH | 0.0 | 0.012228 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0004730 | RBH | 0.868024 | 0.0 | 3.561054 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0056900 | RBH | 0.525417 | 1.6052075 | 2.5360685 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0004590 | RBH | 0.120343 | 0.0 | 0.414694 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0056700 | RBH | 0.0073155 | 0.1281525 | 0.0227365 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0004850 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0004700 | RBH | 0.075622 | 2.123450 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0004700 | SBH | 0.345692 | 1.719022 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0026940 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0004600 | RBH | 0.0 | 0.574903 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G004490 | RBH | 0.0 | 0.551905 | 0.803778 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0004760 | RBH | 0.0 | 1.638906 | 1.855543 |
