Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_06g0004690 | OGI:06009560 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr06:3211088-3214859 | ||||||||
| Gene Symbol | SDRLK-66 | ||||||||||
| DNA seq | ttaaagcagattttgaaccacttggctcatgcttggtctttggctcctctcctcttccacgcatgaaactgctatctttaacatcttgactgcttgtgaataattaaactctccttccagtctgccatcaacaaactccaagagccatgactgatcttcgtttaccaatttctctttgagaatatcagcagtgcgtttaacgcccagttccaccttctcaccctcaaccatccatcttgaaacccgaatccccttcactaactcaagaagcacaactccatagctgaaaacatcagccttgcctgtgatcggaagatttagaacccattctggtgcaatgtaccctctagttccatgcactcttgacaacattagtgcagttccttgcttaagtagtttgaccagtccaaaatctgcaatctttggctcaaagtctttatctaacaatatgttttctggtttgatatcgcagtgtacgatccattcaagacactcatggtgaagatatgccagtccttttgctacgccaagtgcaatattgtaccgttggttccattttagcaaaggaaataagttctgatggtcaaacacaagtctgtctaaagaaccattctcaatgtactcagaaaccaagagcctacttgtcttctctgcacagaacccccaaactctaaccagattcatatgatatattcttcctatgacacttagctcagaccttaactcctgctctccatagatcacatcatttagctttttcactgcaacctgcctttcatcatcgaggactcccttgtaaaccacacctgatccaccattcccgctcttcctgaaaacaattggttgccttgtgtaactccttgtagctgaatcttcggaattggctagaaatgatcatgtaaccttcgtcagtaatctctggtattgtctcccattttttaacaactgaaaagccagcaacaattaaaaccacttcaatcaaaagcactgttaacagagaagaaaggaagtaaccaaacacgaacttggatgggacatcttcgagcatttgtgatgaagggtaggctaatttttcagtaactccacaagaatgggttagtatagaatctgattctttggtaaacggcacccccttaggaactttcaggtagatgtcattgtaaggatctgggaagctcctgccattgaaaagcgtgtactttgggtaacataggccagttccccttcggtaaccgaaggcttggcatttagcgttggccaggcacatatttctacagtttgagaacggcactgactctgcgtagtccatgtcatatccccagaagtcagttccagtgttctttctgaatgaaaagtcccggctgatagtgttgtttgtatttgttctattccctttatcccagatgactgtcatgtctgccttgcgcttgcaccctttgctccagtcactcggatcaatcacctcgaagccttggagtcaagaacaatggagtctcgggatgtaattgcagatgctgtttataccacacactccatgcatttggcatactctagagaatgccatccaagaaactgaccagttgccactggtctcgtttaggctgtacagcctaagatttccatcgtaatccagagtcaacctcctcatgacatgatcgccaagatcagagtcttcaaacttaaataggtcacttgatacaaaacgacctgtctgatttagaaccccatatcggcgactgtcataagttgtccttccattcttccatggcaggtgaaccgaaggatttggccaatatatgctggcagtgtcagggccattgtagacgagagtcaaaatattgttactgtcaaagagaaagttgtagaagcctgaatataacaaacccctggcagatgcagataccagctttacattcctagttattggttgcaacggcagaagtgtgtctgttggcgagtcgaagctcctccatagatgctggccttgtaggtccatgacaacaaggtttccattgttgagaagctctgctcgatttgcttgagtggctgttgtgttggtgctccatacaactttgccattgtagtcaagaagggccaaggtcccgtcgttctggaaggtgagcctggagcccttgccattcaccggagcatcgcggttcaccgtccaagcgacagtcttctctgacgacctggaaaaccagatggagaaggtgaaggcgttggtggccaccttgtagaagccacaggagaaatcgtcattgggggacactaggatggcggtggtgtcatcctgggttgaaatggatgaacgcctagtaagaaagctcttttgatcttttgcaacagcagtggggagcatgagaaggagggatatcactgtggtgaaaatgcagaagcctctcacggcgacggtaagtaTttttttggtcatcatccaagttggtgtgttttagaatcaatatgtcatatattgtagtgttctatcacccttgttgagtcctaagcttgcaaatgctgtggctgtttcctgttgcagttttgctacggcatgcatgaacttaacatgaatgatgaaagcgagcaaacggccagtcgttgattcagcatgtccaggacggcgttgccgagtaccacatgcctgcttggctccgttgctgtctgattcccccaggtgtctggtgacaaacagaacgttgtattggacagggttatggcattcaaaccagaatatttgactggtaatttctatgtaatatgttaggaatatttatagaaccgttatacttatgatagataagtattatgaaagtgatgtctgagaaatatactgggataatttccctgtaccaaatacgaatgtttactccattccatccgtttgcaaatacttctcaatttttaccaagactgcatgttgagtaactatagccaggccagggccacttctgtttgtacagcacatgatagccaaactaaatctttgcaacccaaatatcagcaaattgaacgtataaacactggctaattttgaatctggctggcgttaccaaaaaatttagcaggaaaaaaaatctggccaaagctgtcaaaaaaatatattggtagtactagcactaatacactaccctccttcccgttataagtgcatttttaaaagctagtgaggaaaataagaggaagaaagctagtgaggaaaataagaggaagagaaaattaccaaagcgtctcctattaaatgagcaatggtagagagtgaaaggacagttgagagatgataggattgttcatattttgggacttactccctccattttaaaatgtttgacaccgttgattttttaatatgtgtttgaccattcgtcttattcaaaaaaaattaagtaattatttattattttcacatcatttgattcattgttaaatatactttcatgtacacatatagttttacatatttcataattttttttaataagacgaacggtcaaatatgtgctaaaaagtcaatggtgtcatgaaacggagggagtattttatgacagagataatgcaagtttctcctgtaatggtgctaagcccaaatgggcccaagcattgcaattagaagcaaatgggccggacacaatataccacttggatcagcccagatgatgaggatgcctctcgaacttcgccacggcccacggagcagcagcgctcccggcgacggcgaggagcggcggccaccgccctcgcggcggatttggggtaccccgctgccgcccttgcccat
More
|
||||||||||
| CDS seq | atgggcaagggcggcagcggggtaccccaaatccgccgcgagggcggtggccgccgctcctcgccgtcgccgggagcgctgctgctccgtgggccgtggcgaagttcgagaggcatcctcatcatctgggctgatccaagtgtgatatccctccttctcatgctccccactgctgttgcaaaagatcaaaagagctttcttactaggcgttcatccatttcaacccaggatgacaccaccgccatcctagtgtcccccaatgacgatttctcctgtggcttctacaaggtggccaccaacgccttcaccttctccatctggttttccaggtcgtcagagaagactgtcgcttggacggtgaaccgcgatgctccggtgaatggcaagggctccaggctcaccttccagaacgacgggaccttggcccttcttgactacaatggcaaagttgtatggagcaccaacacaacagccactcaagcaaatcgagcagagcttctcaacaatggaaaccttgttgtcatggacctacaaggccagcatctatggaggagcttcgactcgccaacagacacacttctgccgttgcaaccaataactaggaatgtaaagctggtatctgcatctgccaggggtttgttatattcaggcttctacaactttctctttgacagtaacaatattttgactctcgtctacaatggccctgacactgccagcatatattggccaaatccttcggttcacctgccatggaagaatggaaggacaacttatgacagtcgccgatatggggttctaaatcagacaggtcgttttgtatcaagtgacctatttaagtttgaagactctgatcttggcgatcatgtcatgaggaggttgactctggattacgatggaaatcttaggctgtacagcctaaacgagaccagtggcaactggtcagtttcttggatggcattctctagagtatgccaaatgcatggagtgtgtggcttcgaggtgattgatccgagtgactggagcaaagggtgcaagcgcaaggcagacatgacagtcatctgggataaagggaatagaacaaatacaaacaacactatcagccgggacttttcattcagaaagaacactggaactgacttctggggatatgacatggactacgcagagtcagtgccgttctcaaactgtagaaatatgtgcctggccaacgctaaatgccaagccttcggttaccgaaggggaactggcctatgttacccaaagtacacgcttttcaatggcaggagcttcccagatccttacaatgacatctacctgaaagttcctaagggggtgccgtttaccaaagaatcagattctatactaacccattcttgtggagttactgaaaaattagcctacccttcatcacaaatgctcgaagatgtcccatccaagttcgtgtttggttacttcctttcttctctgttaacagtgcttttgattgaagtggttttaattgttgctggcttttcagttgttaaaaaatgggagacaataccagagattactgacgaagattcagctacaaggagttacacaaggcaaccaattgttttcaggaagagcgggaatggtggatcaggtgtggtttacaagggagtcctcgatgatgaaaggcaggttgcagtgaaaaagctaaatgatgtgatctatggagagcaggagttaaggtctgagctaagtgtcataggaagaatatatcatatgaatctggttagagtttgggggttctgtgcagagaagacaagtaggctcttggtttctgagtacattgagaatggttctttagacagacttgtgtttgaccatcagaacttatttcctttgctaaaatggaaccaacggtacaatattgcacttggcgtagcaaaaggactggcatatcttcaccatgagtgtcttgaatggatcgtacactgcgatatcaaaccagaaaacatattgttagataaagactttgagccaaagattgcagattttggactggtcaaactacttaagcaaggaactgcactaatgttgtcaagagtgcatggaactagagggtacattgcaccagaatgggttctaaatcttccgatcacaggcaaggctgatgttttcagctatggagttgtgcttcttgagttagtgaaggggattcgggtttcaagatggatggttgagggtgagaaggtggaactgggcgttaaacgcactgctgatattctcaaagagaaattggtaaacgaagatcagtcatggctcttggagtttgttgatggcagactggaaggagagtttaattattcacaagcagtcaagatgttaaagatagcagtttcatgcgtggaagaggagaggagccaaagaccaagcatgagccaagtggttcaaaatctgctttaa
More
|
||||||||||
| Protein seq | MGKGGSGVPQIRREGGGRRSSPSPGALLLRGPWRSSRGILIIWADPSVISLLLMLPTAVAKDQKSFLTRRSSISTQDDTTAILVSPNDDFSCGFYKVATNAFTFSIWFSRSSEKTVAWTVNRDAPVNGKGSRLTFQNDGTLALLDYNGKVVWSTNTTATQANRAELLNNGNLVVMDLQGQHLWRSFDSPTDTLLPLQPITRNVKLVSASARGLLYSGFYNFLFDSNNILTLVYNGPDTASIYWPNPSVHLPWKNGRTTYDSRRYGVLNQTGRFVSSDLFKFEDSDLGDHVMRRLTLDYDGNLRLYSLNETSGNWSVSWMAFSRVCQMHGVCGFEVIDPSDWSKGCKRKADMTVIWDKGNRTNTNNTISRDFSFRKNTGTDFWGYDMDYAESVPFSNCRNMCLANAKCQAFGYRRGTGLCYPKYTLFNGRSFPDPYNDIYLKVPKGVPFTKESDSILTHSCGVTEKLAYPSSQMLEDVPSKFVFGYFLSSLLTVLLIEVVLIVAGFSVVKKWETIPEITDEDSATRSYTRQPIVFRKSGNGGSGVVYKGVLDDERQVAVKKLNDVIYGEQELRSELSVIGRIYHMNLVRVWGFCAEKTSRLLVSEYIENGSLDRLVFDHQNLFPLLKWNQRYNIALGVAKGLAYLHHECLEWIVHCDIKPENILLDKDFEPKIADFGLVKLLKQGTALMLSRVHGTRGYIAPEWVLNLPITGKADVFSYGVVLLELVKGIRVSRWMVEGEKVELGVKRTADILKEKLVNEDQSWLLEFVDGRLEGEFNYSQAVKMLKIAVSCVEEERSQRPSMSQVVQNLL |
||||||||||
| Function | Putative receptor protein kinase ZmPK1 [UniProtKB/Swiss-Prot:P17801] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_06g0004690 | OsLiXu_06g0004690.01 | Chr06 | 3211088 | 3214859 | - | NAM | ||
| CDS seq | atgggcaagggcggcagcggggtaccccaaatccgccgcgagggcggtggccgccgctcctcgccgtcgccgggagcgctgctgctccgtgggccgtggcgaagttcgagaggcatcctcatcatctgggctgatccaagtgtgatatccctccttctcatgctccccactgctgttgcaaaagatcaaaagagctttcttactaggcgttcatccatttcaacccaggatgacaccaccgccatcctagtgtcccccaatgacgatttctcctgtggcttctacaaggtggccaccaacgccttcaccttctccatctggttttccaggtcgtcagagaagactgtcgcttggacggtgaaccgcgatgctccggtgaatggcaagggctccaggctcaccttccagaacgacgggaccttggcccttcttgactacaatggcaaagttgtatggagcaccaacacaacagccactcaagcaaatcgagcagagcttctcaacaatggaaaccttgttgtcatggacctacaaggccagcatctatggaggagcttcgactcgccaacagacacacttctgccgttgcaaccaataactaggaatgtaaagctggtatctgcatctgccaggggtttgttatattcaggcttctacaactttctctttgacagtaacaatattttgactctcgtctacaatggccctgacactgccagcatatattggccaaatccttcggttcacctgccatggaagaatggaaggacaacttatgacagtcgccgatatggggttctaaatcagacaggtcgttttgtatcaagtgacctatttaagtttgaagactctgatcttggcgatcatgtcatgaggaggttgactctggattacgatggaaatcttaggctgtacagcctaaacgagaccagtggcaactggtcagtttcttggatggcattctctagagtatgccaaatgcatggagtgtgtggcttcgaggtgattgatccgagtgactggagcaaagggtgcaagcgcaaggcagacatgacagtcatctgggataaagggaatagaacaaatacaaacaacactatcagccgggacttttcattcagaaagaacactggaactgacttctggggatatgacatggactacgcagagtcagtgccgttctcaaactgtagaaatatgtgcctggccaacgctaaatgccaagccttcggttaccgaaggggaactggcctatgttacccaaagtacacgcttttcaatggcaggagcttcccagatccttacaatgacatctacctgaaagttcctaagggggtgccgtttaccaaagaatcagattctatactaacccattcttgtggagttactgaaaaattagcctacccttcatcacaaatgctcgaagatgtcccatccaagttcgtgtttggttacttcctttcttctctgttaacagtgcttttgattgaagtggttttaattgttgctggcttttcagttgttaaaaaatgggagacaataccagagattactgacgaagattcagctacaaggagttacacaaggcaaccaattgttttcaggaagagcgggaatggtggatcaggtgtggtttacaagggagtcctcgatgatgaaaggcaggttgcagtgaaaaagctaaatgatgtgatctatggagagcaggagttaaggtctgagctaagtgtcataggaagaatatatcatatgaatctggttagagtttgggggttctgtgcagagaagacaagtaggctcttggtttctgagtacattgagaatggttctttagacagacttgtgtttgaccatcagaacttatttcctttgctaaaatggaaccaacggtacaatattgcacttggcgtagcaaaaggactggcatatcttcaccatgagtgtcttgaatggatcgtacactgcgatatcaaaccagaaaacatattgttagataaagactttgagccaaagattgcagattttggactggtcaaactacttaagcaaggaactgcactaatgttgtcaagagtgcatggaactagagggtacattgcaccagaatgggttctaaatcttccgatcacaggcaaggctgatgttttcagctatggagttgtgcttcttgagttagtgaaggggattcgggtttcaagatggatggttgagggtgagaaggtggaactgggcgttaaacgcactgctgatattctcaaagagaaattggtaaacgaagatcagtcatggctcttggagtttgttgatggcagactggaaggagagtttaattattcacaagcagtcaagatgttaaagatagcagtttcatgcgtggaagaggagaggagccaaagaccaagcatgagccaagtggttcaaaatctgctttaa
More
|
|||||||
| Protein seq | MGKGGSGVPQIRREGGGRRSSPSPGALLLRGPWRSSRGILIIWADPSVISLLLMLPTAVAKDQKSFLTRRSSISTQDDTTAILVSPNDDFSCGFYKVATNAFTFSIWFSRSSEKTVAWTVNRDAPVNGKGSRLTFQNDGTLALLDYNGKVVWSTNTTATQANRAELLNNGNLVVMDLQGQHLWRSFDSPTDTLLPLQPITRNVKLVSASARGLLYSGFYNFLFDSNNILTLVYNGPDTASIYWPNPSVHLPWKNGRTTYDSRRYGVLNQTGRFVSSDLFKFEDSDLGDHVMRRLTLDYDGNLRLYSLNETSGNWSVSWMAFSRVCQMHGVCGFEVIDPSDWSKGCKRKADMTVIWDKGNRTNTNNTISRDFSFRKNTGTDFWGYDMDYAESVPFSNCRNMCLANAKCQAFGYRRGTGLCYPKYTLFNGRSFPDPYNDIYLKVPKGVPFTKESDSILTHSCGVTEKLAYPSSQMLEDVPSKFVFGYFLSSLLTVLLIEVVLIVAGFSVVKKWETIPEITDEDSATRSYTRQPIVFRKSGNGGSGVVYKGVLDDERQVAVKKLNDVIYGEQELRSELSVIGRIYHMNLVRVWGFCAEKTSRLLVSEYIENGSLDRLVFDHQNLFPLLKWNQRYNIALGVAKGLAYLHHECLEWIVHCDIKPENILLDKDFEPKIADFGLVKLLKQGTALMLSRVHGTRGYIAPEWVLNLPITGKADVFSYGVVLLELVKGIRVSRWMVEGEKVELGVKRTADILKEKLVNEDQSWLLEFVDGRLEGEFNYSQAVKMLKIAVSCVEEERSQRPSMSQVVQNLL
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.165837 | 0.094620 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0164900 | SBH | 0.271249 | 0.126373 | 0.427826 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g06920 | RBH | 0.067860 | 0.000000 | 0.123283 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0164900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0004800 | SBH | 0.0 | 0.365867 | 0.074983 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0004700 | RBH | 0.0 | 1.662378 | 0.586293 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0004640 | RBH | 0.123807 | 1.757458 | 0.097482 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0004800 | RBH | 0.057003 | 0.040463 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0004690 | RBH | 0.396238 | 2.838548 | 0.429901 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0056600 | RBH | 0.227399 | 1.6215855 | 0.277127 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0004560 | RBH | 0.000000 | 0.119531 | 0.235512 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0056500 | RBH | 0.2118515 | 1.5991575 | 1.2328565 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0004810 | RBH | 0.0 | 0.099884 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0004660 | RBH | 0.053204 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0004700 | RBH | 0.345692 | 1.719022 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0026940 | SBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0004560 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G004460 | RBH | 0.000000 | 0.425971 | 0.300114 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0004720 | RBH | 0.636696 | 1.539949 | 2.768958 |
