Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_06g0004100 | OGI:06008510 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr06:2832391-2837422 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ccgatccggcgcgcctcgccgtcaacccacgcggcggcgcggcggcgagttcgccgaagccatgccgagctcgccgaaggtcttctcctcggcgaccacctcccgccgcgccacgctccgccgcatcctctccaccccggccttctccgccgcctgcctcctcttcggcctcgcgggcttcctcgccgccgcgctctccttctcctggtcgccggggagcgcgccgcgcgtccgctgcccggactcctcccgcccgctctccgtctccgtcgcgtgggaccgccggcccggggatgcgtcccccggggccgtggcggcggcgggcgccgccgtggatctcccggcgtcgcacgccaccgggtcgcgcgggaggcacaaggtgatggccttcgtcgggatcttcacggggttcggctccgtcgggcggcgacgcgcgctgcggcggacgtggctgcccgcggatcggcagggtctccttcggttagtcgctggtatcacagtttgctagttcgtgtctgcttgtgttgctcgagatctggctttagttttaggtgttcaactgttgatgttgctggttacctaattacgggagtggagcggaaatagttactgattagactttagtacgtaggtgatctaatttgttcatttctatgatcttagatgtaattttacggttcgttatcaaataaacatgagatagagatcactcatcactataaggttgtatttgctttagtgagatctgcttattggtatggcccattgctagctctaattcatctatagccaatctaatagtcaattcatacaatagttgcttactatactatcaatgtcccacctaccatacacacattatgtcctggagtccgtgctttagctggctacaaatctgtagcccgctgctcttctctctcttcctttatctctttaaaatatgtttacagctagcttatagtctgctattgtacctgctcttaattcattccatctgttctcattgttttcgaggaagaattatgctgctattcttgaagaagggattgatcatgtggatttgttagtttttttttctctagtacttatgtcatgagatccaactataagtctacaatgtacatgaaaatgcacatggaggttccggaatatatttaattcgtaggttcaataaactttgactaaagcggcctgccagctgaaaccagctccatgctgcctagtagatgagcagccattaactgttttgcttcggtttcagcctaagtggacttttgttgtccaaaagtccaaccattcttaataaagagatgatcatcaccatctctgtttctgtatttcagtttccgttaatggtgattttggctaactgccattacaatagttgtatttttgtgttcactgtattacagattggaggaagcaactggtctggcattcagatttgtgattggaaaaagtaatgacaagtctaagatggcagctttagaaagagaggttcaagaatacgatgatttcgtgcttttagatctggaggaggagtatagcaagcttccgtacaaaacgtaaatagcagaactattatcatatgcttttgttatttcttcagaaagatgctgatttattcttatgttgtaggttagcttactttaaggctgcgtatgcattgtatgactctgacttctatgttaaagctgatgatgatatctacttgagaccaggtgcataccaatgccctacatatcctcttacagattttgacttggatatcatattttttttaatggctggcactttcattactgatatctattctgcagatagactttcattgcttttggctaaggagcgttcacatacacaaacatacattggatgcatgaagaaggggcctgtttttactgacccaaagctgaaatggtcagttctgttatttagtcttgtatgacataatgaaccccttttatgccatatttttttttattgagaaagttcaactctatgaagaaatgcatacagcatcgtggctcatgctaagcaaatgtaaattagataataaagaaaTtttgtcgtccagatgcgaccctcacacctccaaaaaaagttaataattttatggtgtcaaaaaatatttcatcaccgtataaatatgaactgaaaataactcagtttcagattcgtaattacgcgtttacttcctccgtttcataatgtaagtcattctagcatttcctatattcatattgatgttaatgaatctagatagatatagatgtctatattcattaacatcaatatgaatgcggaatatgctagaatgacttacattgtgaaacggagggagtatgttatattgtacaaaaccagaactgctggtacctcaatatccggatggtttctcataaagttaagcacagaccacactagatatggtgtgtaaagcaagcacttgatctgtagggttggaaggcgaaggaaagtattagcaaggaatgtgtttacttgattgtttttcagatgttaatgcgcatgtatcccaaactagatgaatactccgtcgcgttgctgcggaaaattaagttgcataatatgtacaaataagatgtaatttgattatcaaaactaaaacaatttgatacaattttgagcctaaaaataattgagattgcatgtttttaagagagaagaaagaagagacaatttggatcatagatctatcatccaaaggctagaaataattggggtgatgtggcttaatgagaggagagaaatagcattaactacacttagtggggatgaactatgtaagtataaaggattcctgaatcctaacgacttttgtcaggttcaacatcttatcagtattattcgaggatcaaagaaaatcatatatatccttcatcagttttgtattttgtcacacgctccaccctccaattcaccagtgcagctgtcatttttgaatctgtgcttaaaatattgctagcttagctgtgcaagcactcttgtgatcctacaagttggtgcaagcacaaagtgttcagtttgtgagtctattccctccaacgtgattttcagtttcctctttgctattatagttttaagacagttgttagcttagcttttagggtagtatagacagaattctataaccaaggcatgttgctgtggcaaatggtgtgagggcatatatgctgagtataccacatgctgtttggacttcagactttctattgttccacacagcaaaaatattccatgtaccattcatcaatgactgcttatcatattgtttctgctctttttccaaatgcaggtatgagccacaatcctttttgctcggatcagaatacttccttcatgcatatgggcctatttacgctttatcagccgatgtggtggcaagcttggttgccttgaggaacaacaggtaattaacagtactcatcctatcttattgtgaagcagcattcttcaacttgccttctcaaaccagttagcctatgaaatagtattcaatgttggtttgggtctatggtttccctgctttgatggccagtgatggtgaggccaccgctcactgtatgactaacatgagcaacactactgcactgcaaatccatatacttctgtaaagaagttgtattgactgttactgctgtcttactggctttcatattagccttgttcccacaattctgagctattcttggtagttttagccctctcatgtaaaagaagtggtgtttcttttcagcaaaactttcccttttttggctcaacaaattaagagcgaagggaaatagtgtgtggttattgattaattgctcacgatatattaaactcagaagccctggagcctaaagtaaacatactacatggttatgtcatgggcttcagcagtagaagtttcgtacataagactgttgttgcattcatgtttttcattttgcatcactgttaaacttcatccacgatcgagtcacgttatatgtttgtttaatgaattctcacatatgtttctacagtttccgtatgttcagcaatgaggatgttactattggatcctggatgcttgctatgaacgtcaaccatgagaacacacatgcactttgttcacctgagtgcacagagtcttcaattgctgtttgggatattccaaaatgttcaggttatttactttcttgactcttatattgatgtcatttgaagtggaagtgcttggtgaattatcttttttccttatctatatatttgcgtggcccttaaagtattatcacatcacactttccttttgatcaacttcaacatcacaaaggccgtagcccatataggtctgtgaagctgagaatcaataaagttaacattaacctgcacaagtattgcatagtactaaaaaaccaaactcttgttaggaagatgaataaaagtgagggatgtgcttgtgcagaagctggttctgaaacttgcaaagcattgtttttctcaaggacgctaatgcctaagatctttcagtctagctgacgcatgctaacatgttcccaaatctatcatcatccagggctatgccacccggaggtaaagatgctggagcttcatcgaaggaaggaatgtacaggtggtccatctgcggtgtctgaatctgacgaccgataaattatcgtccctacacggactacagtccaggcaacatgatgacagaatggttgaccactgacgcctcgaatggattgcccgagcattcactgacttcaccaggcacaatcattgcctggggcgcgccgtccaggcagccaacaccgccgatttcaggcgtcagatacacgggatcacagagctcttgttccacattcttgtcacattctcatttgcttatgacttcagaacttggtagtatattcttgcgaggaatgctcatcatgtgcccttgtgaagcagttttgttgtatagtagtagaatgcatcacaaattaacacagtttctatgcttcgtactacttttgaatatatttttttaaccttcgctatacgt
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| CDS seq | atgccgagctcgccgaaggtcttctcctcggcgaccacctcccgccgcgccacgctccgccgcatcctctccaccccggccttctccgccgcctgcctcctcttcggcctcgcgggcttcctcgccgccgcgctctccttctcctggtcgccggggagcgcgccgcgcgtccgctgcccggactcctcccgcccgctctccgtctccgtcgcgtgggaccgccggcccggggatgcgtcccccggggccgtggcggcggcgggcgccgccgtggatctcccggcgtcgcacgccaccgggtcgcgcgggaggcacaaggtgatggccttcgtcgggatcttcacggggttcggctccgtcgggcggcgacgcgcgctgcggcggacgtggctgcccgcggatcggcagggtctccttcgattggaggaagcaactggtctggcattcagatttgtgattggaaaaagtaatgacaagtctaagatggcagctttagaaagagaggttcaagaatacgatgatttcgtgcttttagatctggaggaggagtatagcaagcttccgtacaaaacgttagcttactttaaggctgcgtatgcattgtatgactctgacttctatgttaaagctgatgatgatatctacttgagaccagatagactttcattgcttttggctaaggagcgttcacatacacaaacatacattggatgcatgaagaaggggcctgtttttactgacccaaagctgaaatggtatgagccacaatcctttttgctcggatcagaatacttccttcatgcatatgggcctatttacgctttatcagccgatgtggtggcaagcttggttgccttgaggaacaacagtttccgtatgttcagcaatgaggatgttactattggatcctggatgcttgctatgaacgtcaaccatgagaacacacatgcactttgttcacctgagtgcacagagtcttcaattgctgtttgggatattccaaaatgttcagggctatgccacccggaggtaaagatgctggagcttcatcgaaggaaggaatgtacaggtggtccatctgcggtgtctgaatctgacgaccgataa
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| Protein seq | MPSSPKVFSSATTSRRATLRRILSTPAFSAACLLFGLAGFLAAALSFSWSPGSAPRVRCPDSSRPLSVSVAWDRRPGDASPGAVAAAGAAVDLPASHATGSRGRHKVMAFVGIFTGFGSVGRRRALRRTWLPADRQGLLRLEEATGLAFRFVIGKSNDKSKMAALEREVQEYDDFVLLDLEEEYSKLPYKTLAYFKAAYALYDSDFYVKADDDIYLRPDRLSLLLAKERSHTQTYIGCMKKGPVFTDPKLKWYEPQSFLLGSEYFLHAYGPIYALSADVVASLVALRNNSFRMFSNEDVTIGSWMLAMNVNHENTHALCSPECTESSIAVWDIPKCSGLCHPEVKMLELHRRKECTGGPSAVSESDDR |
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| Function | Probable beta-1,3-galactosyltransferase 14 [UniProtKB/Swiss-Prot:Q8L7M1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_06g0004100 | OsLiXu_06g0004100.01 | Chr06 | 2832391 | 2837422 | + | NAM | ||
| CDS seq | atgccgagctcgccgaaggtcttctcctcggcgaccacctcccgccgcgccacgctccgccgcatcctctccaccccggccttctccgccgcctgcctcctcttcggcctcgcgggcttcctcgccgccgcgctctccttctcctggtcgccggggagcgcgccgcgcgtccgctgcccggactcctcccgcccgctctccgtctccgtcgcgtgggaccgccggcccggggatgcgtcccccggggccgtggcggcggcgggcgccgccgtggatctcccggcgtcgcacgccaccgggtcgcgcgggaggcacaaggtgatggccttcgtcgggatcttcacggggttcggctccgtcgggcggcgacgcgcgctgcggcggacgtggctgcccgcggatcggcagggtctccttcgattggaggaagcaactggtctggcattcagatttgtgattggaaaaagtaatgacaagtctaagatggcagctttagaaagagaggttcaagaatacgatgatttcgtgcttttagatctggaggaggagtatagcaagcttccgtacaaaacgttagcttactttaaggctgcgtatgcattgtatgactctgacttctatgttaaagctgatgatgatatctacttgagaccagatagactttcattgcttttggctaaggagcgttcacatacacaaacatacattggatgcatgaagaaggggcctgtttttactgacccaaagctgaaatggtatgagccacaatcctttttgctcggatcagaatacttccttcatgcatatgggcctatttacgctttatcagccgatgtggtggcaagcttggttgccttgaggaacaacagtttccgtatgttcagcaatgaggatgttactattggatcctggatgcttgctatgaacgtcaaccatgagaacacacatgcactttgttcacctgagtgcacagagtcttcaattgctgtttgggatattccaaaatgttcagggctatgccacccggaggtaaagatgctggagcttcatcgaaggaaggaatgtacaggtggtccatctgcggtgtctgaatctgacgaccgataa
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| Protein seq | MPSSPKVFSSATTSRRATLRRILSTPAFSAACLLFGLAGFLAAALSFSWSPGSAPRVRCPDSSRPLSVSVAWDRRPGDASPGAVAAAGAAVDLPASHATGSRGRHKVMAFVGIFTGFGSVGRRRALRRTWLPADRQGLLRLEEATGLAFRFVIGKSNDKSKMAALEREVQEYDDFVLLDLEEEYSKLPYKTLAYFKAAYALYDSDFYVKADDDIYLRPDRLSLLLAKERSHTQTYIGCMKKGPVFTDPKLKWYEPQSFLLGSEYFLHAYGPIYALSADVVASLVALRNNSFRMFSNEDVTIGSWMLAMNVNHENTHALCSPECTESSIAVWDIPKCSGLCHPEVKMLELHRRKECTGGPSAVSESDDR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.182964 | 1.226355 | 0.712912 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0156900 | RBH | 1.744160 | 0.648524 | 2.373323 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g06280 | RBH | 1.177965 | 0.435622 | 0.590173 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0156900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0004230 | RBH | 0.195070 | 1.458132 | 3.596414 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0004120 | RBH | 0.000000 | 0.958803 | 2.290802 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0004050 | RBH | 0.470993 | 4.111578 | 8.900225 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0004180 | RBH | 0.023710 | 0.549456 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0004070 | RBH | 0.672422 | 21.101185 | 12.754163 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0049500 | RBH | 4.258065 | 10.658367 | 6.9957 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0003970 | RBH | 0.125169 | 1.180071 | 0.818572 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0050500 | RBH | 5.797365 | 11.5821825 | 13.8691565 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0004210 | RBH | 0.101277 | 0.110424 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0004070 | RBH | 1.095623 | 12.182277 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0004120 | RBH | 0.000000 | 4.071079 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0003970 | RBH | 0.116679 | 7.776853 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G003930 | RBH | 0.197415 | 7.578466 | 1.014824 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0004150 | RBH | 0.259247 | 15.994449 | 6.489711 |
