Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_06g0003680 | OGI:06007660 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr06:2584536-2587359 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | taaccaaatttcagacacggaggattgggaattcaggctgaacaattcagagtctaaacagttctgtctgcaaaatgctacgatccagcaccttataagagatttacagatgagtaagtgagcaatacatcatgatgttcatatcattaattatcagcaacacatacgaaagaatactttggtttgtggctgagcaaatccaaaggcagtgcaggaatccgaaaaattacaaagacatggtgcatcatgttttctaaatgattcatcgacccagaagtgtgacgcggtccttctgaatgacctgagccaggttgagatcaaaaagctcacaacgaattggcatctccatctcgtagaatggatttttcaaaacaaaatccgtgtagagctcgtatatgactttcagtagtgtctcgatattttgagcaccagtttcgcatacagcaaaaaactttgtccctggtgaaacagaagcaatcatacagatcagcagcaggcaagtgcaaaccacaaaaggacactgatttttttttggtctaacaatcaacaattcggaaaaacacctgccccatgaaacagaggtgggtcactatgtttacaattgaaccaatttagcaacattcctttcagtcaccaaataaagtataactggacaactaactctagagatgtaccggggcctacttaaagatcaaaaggcacaatatagtcaagaaagtatgttctccaacattccaattaaaatgtttagcacagaaaaagatatactgagcagacaacatatcccaatgctttcattgtctttttgcagtatatatctgcacctagtatggatcaagaaatatctcacttctgccagacattcacactaaagttcagtaaacattgcaatccggctccataagccatacttattattgaagtatcaaattaatactaatatctcacacactaactcccttgtaccgaagttttcgagaattctgaaatgacagaactctaagatcttgctgctgaaaaatggctagaaactagaaaacacaatacccaccagaatcaagcactaaattcaattagattggccaaacttgtttcgtcattatttatacttcccatgaactaaagtcttggcatggcttgaacatatatatcaatgtaactcgtccaaactgccatttataggagtgtgctattgttagtttgttagtttgttagtttaatatattttgtccatcaagcaagctacgagtgagagtgataatgctcacaatgcatacaactgagaatgctgcccactttaaggaacaggccccaagtacccaactgccaagccacaagtacagaaacattatttcagcaaatgcaaagcctgtaaatcacactcagactatgcttagcaaccgcaagatacaagcccatgattatgtgcttataattcatgtcactatctccacaacattcagaaatcggaacaactaaagagaaactttgtgaaagattagagatatgatgcatacttatagaaaaaaaaacgacaaactgtaataattgacttccaacccaataatactaagaactttgcagctataagcatccggatcagatttatcatgaaaatttacaactgaggaggatgataaagacctgtgagggactggaagcaatggagatcaaagttatgggcttgtagaaggtcaatgccttcgcagccatgtgtaggggacagctgctgggagatagcatgcatggaatgccaaagacttgccaagcgtagactgtcattggtgtccgtcctacctgctgagccatagtcctggacaaatgagatgtgcaaggtgttcagagtccagctccgaaagaacgaagagaaacaggagtacagtaaacaataccttgtagtatataaggccgccagatttgttaatgatgaaaaggctgtagattgctgctgacgccattatcacacaagaatgctgagtagaaactgaagtaattttcctgtattagctgcagagaagcctaataaaaatttgacacatgtaaaagggaaaatggaactagtaaaaggatggccttcctacaaagtggtttgtaagctatttttaatgaaacaaatgggaagataatatgcaagacaaattatggatcgattgccctcttttcaaactgcacataactttgttcaatgctgatacaccataaactaatactccaagtttacaaccataaattgaaattgggacttgaagccttcgattgacgacaatgaattgtcattccaactaattgaagtggaacatgaagacttagaactgacaaagggtcaccactctaactaagagcattccattttcttacaggacacgttgcatttctaagcaagtttgcttatggcctgatccacgcggtggcacatttgaaggttcaaaggccagaggaggggaaaatccgggatggacggaggaggagggaggagaggcgtcgccaatcacgcaagggcttcgtgcgcatgcggcgcgaggggatcgggtgagccgaggaggggaagagatccacaatctgaagaaacacagggaatcctcattcccccaacctgagagcatccgggctatctgcgtggtctcccaccgatctttctcgcctgcactgcacacacgcacggagagtcggcgagagcgagcgccagccacgtacctagcaccacggcgagacgacgcagggatttcagcaggtggtggtgcgtgcgggcgtgcgtgcggcccggcgaggtcgtcgctcccgctccgtccgccggcgtctttcttggcggcgggatctgccgcgg
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| CDS seq | atggcgtcagcagcaatctacagccttttcatcattaacaaatctggcggccttatatactacaaggactatggctcagcaggtaggacggacaccaatgacagtctacgcttggcaagtctttggcattccatgcatgctatctcccagcagctgtcccctacacatggctgcgaaggcattgaccttctacaagcccataactttgatctccattgcttccagtccctcacagggacaaagttttttgctgtatgcgaaactggtgctcaaaatatcgagacactactgaaagtcatatacgagctctacacggattttgttttgaaaaatccattctacgagatggagatgccaattcgttgtgagctttttgatctcaacctggctcaggtcattcagaaggaccgcgtcacacttctgggtcgatga
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| Protein seq | MASAAIYSLFIINKSGGLIYYKDYGSAGRTDTNDSLRLASLWHSMHAISQQLSPTHGCEGIDLLQAHNFDLHCFQSLTGTKFFAVCETGAQNIETLLKVIYELYTDFVLKNPFYEMEMPIRCELFDLNLAQVIQKDRVTLLGR |
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| Function | Trafficking protein particle complex subunit 4 [UniProtKB/Swiss-Prot:Q54UU1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_06g0003680 | OsLiXu_06g0003680.01 | Chr06 | 2584536 | 2587359 | - | NAM | ||
| CDS seq | atggcgtcagcagcaatctacagccttttcatcattaacaaatctggcggccttatatactacaaggactatggctcagcaggtaggacggacaccaatgacagtctacgcttggcaagtctttggcattccatgcatgctatctcccagcagctgtcccctacacatggctgcgaaggcattgaccttctacaagcccataactttgatctccattgcttccagtccctcacagggacaaagttttttgctgtatgcgaaactggtgctcaaaatatcgagacactactgaaagtcatatacgagctctacacggattttgttttgaaaaatccattctacgagatggagatgccaattcgttgtgagctttttgatctcaacctggctcaggtcattcagaaggaccgcgtcacacttctgggtcgatga
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| Protein seq | MASAAIYSLFIINKSGGLIYYKDYGSAGRTDTNDSLRLASLWHSMHAISQQLSPTHGCEGIDLLQAHNFDLHCFQSLTGTKFFAVCETGAQNIETLLKVIYELYTDFVLKNPFYEMEMPIRCELFDLNLAQVIQKDRVTLLGR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.611655 | 0.926004 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0151300 | RBH | 0.000000 | 0.142277 | 0.384979 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g05804 | RBH | 0.295246 | 0.136078 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0151300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0003820 | RBH | 0.000000 | 13.506557 | 3.933223 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0003710 | RBH | 0.0 | 2.451467 | 1.096362 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0003650 | RBH | 0.385594 | 10.675586 | 5.640327 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0003750 | RBH | 0.0 | 0.476515 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0003660 | RBH | 1.201878 | 14.784522 | 6.386142 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0044100 | RBH | 2.859037 | 4.373524 | 8.9165735 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0003600 | RBH | 0.0 | 0.550440 | 0.626184 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0045900 | RBH | 2.4548705 | 3.7443675 | 8.2735265 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0003780 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0003640 | RBH | 0.0 | 6.890998 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0003700 | RBH | 0.0 | 7.201420 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0026350 | RBH | 0.234718 | 0.0 | 0.590281 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0003520 | RBH | 0.000000 | 1.149484 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G003520 | RBH | 0.172101 | 9.972528 | 1.827307 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0003720 | RBH | 0.286126 | 11.459921 | 2.235650 |
