Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_06g0000990 | OGI:06001930 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr06:698932-702619 | ||||||||
| Gene Symbol | OsFbox289, Os_F0510 | ||||||||||
| DNA seq | attgacttcattattgacttgcagagcctgctatcatggaaaacacctgcaagaggatctccaacacccccaactccatgccagtgctccaaggatgggcagacctcccagatgacctactgcagtgtgtccttgctctgttgagttcacccagtgaccttgctgccttcattgccacctgccccaattggcatgctgccttcaggtctgcaaaatctaccttacgcaccaccctcttccgtcctcttgccatccgcagctgcgcttcctctggcgatgatccagtagtatgggagctctttgatccagccaagccaaccatctgcatacaccgcgtgactccgccagattttctggcggggatggattatgaatgctgttcttatggccatgccatcttctctggcaatgccccctcgctgaaggacacaaccttcgccatcgtcgacgtgttcaccggcactagtgtttcacctccaccctgcccattctttacttttgtcaactcttgtgccctcacagctcctcttgattatcacaactcgcatttccttgtcgaggccaagcactccctgttcgcatggcgagttggaagcgaccattggtcgcagtgcagttgcccgcccaattctaaagctcttgagcagtttgtgcccttcaaaggccagctctatgccctcgagtatcagcagctttacaccgtcaagctggaaccccagctcagcctggaagaagtacaagttgtctggagcgtcgagatgtcggagcctgacctctgcgagccatcgctggtggtgtgtgatgacatgctcatcctgctcgccgcctccatcggcgaggccttccgccttgacctgtcatcccagcctgcaatgtgggtgaagatggaagaggaagagttgaaggaatgggccttcttcttcgatgagaagagggaggctttcaggccacggccaccattgtcttgcaagaacccacagagatggggagggatcggctatgattcatactgtgtgtcatccttggcgccaaatcaaggcaatcgcagagggttgctgcccaactgggtgaagcccaggatgctactctcttgcgatcattagctgctacaaggaagctttgtttgggtttatcttctgctgaaattctctcctcaagtgctgcagagcagaagggcttttgcaactcaagctactatatctatgatggcatctgaattctgaacaggctgcaagggatggcttgcaggatgtttatgtttttggtgaactgccatgttcgttttaattatcgtctgttagaaataatagttattggttttttgttatttgggttagttttctggaggcaaactgttgtgcctgttactctgaatgtctgaaccttgttttatctctctacaagaaataatatttaccttgttgtgaaggggaaaaatggtattgcatcctgttccgtgttaaatgcagtattacttgtgcgttcaatttgattttccttccaacatgtttattatgcatgagatgtgtgcaacgatgtttttttggatgtgatcgatgcatttacagcttggttcttccaaagggaaaaagcattttcaggctttcagctcttccagtttgctgaaaatatgcatgtccagaggcacatgcttttgtattcctggatacatgaagatgatttcgatggccctgaggctttccaggatcagatggatgatgaaggtaaaaattcagcatgacgctgtttatctgaaaattaagatgaaatcaaacgcgatgctgttcatctgaatcttgatgaagtcctgagtccgacccatgttagtcggctcgtagctcatggatttcttctcacgtgaggcccatatgtattgggccggttggtttatgggccttagtttcttatgcggcacataagtcccaacctgtatccgtccccacctgtcagtacttatgttttgactttttgacccacccaaactcattctcacctcatcaccgggcaccggccatggcgccttatccattaccgccgccgtcgccgccgcagcagcagcttcctccggcgagcagcagcaagccgaggaggccaccgcctcatcgctcccatggcggctacaagaacggcaccgtctccgtggattccggcgcccctcacgacgcccgaggcctccgggctctcatcaaggccttggccgcggagcacggcgaggccgcgccggccgtgcacgcccacgcggccaagctcggcctcgacggccgccgcgccgtccgtgacgggctcgtcgagctctacctcgcgcgcggcgagctcgcctccgcgcgggcgctcgtcgacgggttccccgccggccgggacgtcgtctcttgcacggccatggtgaccggccacgcgaggcacgggttcttggacgaggccgtggtgctgttcttcgccatggcggatgaccgcggcgtggccatcgacgccgtcgccgccgccgcggcgttctcggcgtgcgcgcagatcggggacctcgcgctgggtcgggaggcgcaccggcgcgtcgcggagaggaaggttgctatggatgtcgtcgcgtggaacgcgctggttgacatgtacgccaagtgcggcgacgcggcggcggcgcaccggtggttcaggaggatgcccgtgaagaagaacgtcgtctcctggaacacgatgatgtccgcgttcgcgcgcgccggtgagctcgaggaggcgctcgcgctgttccaggagatgcaggccgcggcggtgcgcccggacgacgcgacgttcgtcgccgccctcggcgcgtgcgcgcagctcggcgcgctggacaccggcaggtggttgcacgcatacatggggaggatggggcacagcgccgacggcgtcgtcggcaacgcgctgcttgacatgtacgccaagtgcggcgcggtcgaccaggccacggaggtgttcgacggcatggcgcggcgagacgtgtacacctacacatccatgatcctggggctcgcaatgcacggccgcggcgaggacgccctgtctctattcgccggcatgcaacgagccggcgtgacgccgaacgaggtgaccctcctcggcgtcctcacggcgtgctgtcacgccggacttgtcgaggaggggctccagcaactcaacgccatgccggaacctcgcatcgagcactacggctgcgtcgtcgacatgctcggccgcgccgggagactagacgaggcagaggagctcatcgcggcaatgccagtacactccgacgcgctcatctggagctcgctgctcgccgcatgccgcgcgcacggcgacgtcgagcgcgccgagcgggtgatgcgacggcgcgtggccgacgcggacgccggcgactacgtgctcatgtcgaacacgtacgcgtcgaatggccggcacggtgaggcggtgaaggtgagggggcagatgaggaggaacgagatcgacaaggtccccggctgcagcctcatcgagatcgacggcgtcgtgcacgaattcaaagcaatcccagcaaattccatccgataaaaccacaacaagattcatcaaagaacagattatccgattgatcactgtagataacaagattcatacaaccaacgacgcaagattttcactggaaattttctagtactagttgtacatgagatttcagaaggcattatttggcttt
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| CDS seq | atggaaaacacctgcaagaggatctccaacacccccaactccatgccagtgctccaaggatgggcagacctcccagatgacctactgcagtgtgtccttgctctgttgagttcacccagtgaccttgctgccttcattgccacctgccccaattggcatgctgccttcaggtctgcaaaatctaccttacgcaccaccctcttccgtcctcttgccatccgcagctgcgcttcctctggcgatgatccagtagtatgggagctctttgatccagccaagccaaccatctgcatacaccgcgtgactccgccagattttctggcggggatggattatgaatgctgttcttatggccatgccatcttctctggcaatgccccctcgctgaaggacacaaccttcgccatcgtcgacgtgttcaccggcactagtgtttcacctccaccctgcccattctttacttttgtcaactcttgtgccctcacagctcctcttgattatcacaactcgcatttccttgtcgaggccaagcactccctgttcgcatggcgagttggaagcgaccattggtcgcagtgcagttgcccgcccaattctaaagctcttgagcagtttgtgcccttcaaaggccagctctatgccctcgagtatcagcagctttacaccgtcaagctggaaccccagctcagcctggaagaagtacaagttgtctggagcgtcgagatgtcggagcctgacctctgcgagccatcgctggtggtgtgtgatgacatgctcatcctgctcgccgcctccatcggcgaggccttccgccttgacctgtcatcccagcctgcaatgtgggtgaagatggaagaggaagagttgaaggaatgggccttcttcttcgatgagaagagggaggctttcaggccacggccaccattgtcttgcaagaacccacagagatggggagggatcggctatgattcatactcttggttcttccaaagggaaaaagcattttcaggctttcagctcttccagtttgctgaaaatatgcatgtccagaggcacatgcttttgtattcctggatacatgaagatgatttcgatggccctgaggctttccaggatcagatggatgatgaagtttcttatgcggcacataagtcccaacctgtatccgtccccacctgtcagtacttatgttttgactttttgacccacccaaactcattctcacctcatcaccgggcaccggccatggcgccttatccattaccgccgccgtcgccgccgcagcagcagcttcctccggcgagcagcagcaagccgaggaggccaccgcctcatcgctcccatggcggctacaagaacggcaccgtctccgtggattccggcgcccctcacgacgcccgaggcctccgggctctcatcaaggccttggccgcggagcacggcgaggccgcgccggccgtgcacgcccacgcggccaagctcggcctcgacggccgccgcgccgtccgtgacgggctcgtcgagctctacctcgcgcgcggcgagctcgcctccgcgcgggcgctcgtcgacgggttccccgccggccgggacgtcgtctcttgcacggccatggtgaccggccacgcgaggcacgggttcttggacgaggccgtggtgctgttcttcgccatggcggatgaccgcggcgtggccatcgacgccgtcgccgccgccgcggcgttctcggcgtgcgcgcagatcggggacctcgcgctgggtcgggaggcgcaccggcgcgtcgcggagaggaaggttgctatggatgtcgtcgcgtggaacgcgctggttgacatgtacgccaagtgcggcgacgcggcggcggcgcaccggtggttcaggaggatgcccgtgaagaagaacgtcgtctcctggaacacgatgatgtccgcgttcgcgcgcgccggtgagctcgaggaggcgctcgcgctgttccaggagatgcaggccgcggcggtgcgcccggacgacgcgacgttcgtcgccgccctcggcgcgtgcgcgcagctcggcgcgctggacaccggcaggtggttgcacgcatacatggggaggatggggcacagcgccgacggcgtcgtcggcaacgcgctgcttgacatgtacgccaagtgcggcgcggtcgaccaggccacggaggtgttcgacggcatggcgcggcgagacgtgtacacctacacatccatgatcctggggctcgcaatgcacggccgcggcgaggacgccctgtctctattcgccggcatgcaacgagccggcgtgacgccgaacgaggtgaccctcctcggcgtcctcacggcgtgctgtcacgccggacttgtcgaggaggggctccagcaactcaacgccatgccggaacctcgcatcgagcactacggctgcgtcgtcgacatgctcggccgcgccgggagactagacgaggcagaggagctcatcgcggcaatgccagtacactccgacgcgctcatctggagctcgctgctcgccgcatgccgcgcgcacggcgacgtcgagcgcgccgagcgggtgatgcgacggcgcgtggccgacgcggacgccggcgactacgtgctcatgtcgaacacgtacgcgtcgaatggccggcacggtgaggcggtgaaggtgagggggcagatgaggaggaacgagatcgacaaggtccccggctgcagcctcatcgagatcgacggcgtcgtgcacgaattcaaagcaatcccagcaaattccatccgataa
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| Protein seq | MENTCKRISNTPNSMPVLQGWADLPDDLLQCVLALLSSPSDLAAFIATCPNWHAAFRSAKSTLRTTLFRPLAIRSCASSGDDPVVWELFDPAKPTICIHRVTPPDFLAGMDYECCSYGHAIFSGNAPSLKDTTFAIVDVFTGTSVSPPPCPFFTFVNSCALTAPLDYHNSHFLVEAKHSLFAWRVGSDHWSQCSCPPNSKALEQFVPFKGQLYALEYQQLYTVKLEPQLSLEEVQVVWSVEMSEPDLCEPSLVVCDDMLILLAASIGEAFRLDLSSQPAMWVKMEEEELKEWAFFFDEKREAFRPRPPLSCKNPQRWGGIGYDSYSWFFQREKAFSGFQLFQFAENMHVQRHMLLYSWIHEDDFDGPEAFQDQMDDEVSYAAHKSQPVSVPTCQYLCFDFLTHPNSFSPHHRAPAMAPYPLPPPSPPQQQLPPASSSKPRRPPPHRSHGGYKNGTVSVDSGAPHDARGLRALIKALAAEHGEAAPAVHAHAAKLGLDGRRAVRDGLVELYLARGELASARALVDGFPAGRDVVSCTAMVTGHARHGFLDEAVVLFFAMADDRGVAIDAVAAAAAFSACAQIGDLALGREAHRRVAERKVAMDVVAWNALVDMYAKCGDAAAAHRWFRRMPVKKNVVSWNTMMSAFARAGELEEALALFQEMQAAAVRPDDATFVAALGACAQLGALDTGRWLHAYMGRMGHSADGVVGNALLDMYAKCGAVDQATEVFDGMARRDVYTYTSMILGLAMHGRGEDALSLFAGMQRAGVTPNEVTLLGVLTACCHAGLVEEGLQQLNAMPEPRIEHYGCVVDMLGRAGRLDEAEELIAAMPVHSDALIWSSLLAACRAHGDVERAERVMRRRVADADAGDYVLMSNTYASNGRHGEAVKVRGQMRRNEIDKVPGCSLIEIDGVVHEFKAIPANSIR |
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| Function | Pentatricopeptide repeat-containing protein At2g22410, mitochondrial [UniProtKB/Swiss-Prot:Q9SJZ3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_06g0000990 | OsLiXu_06g0000990.01 | Chr06 | 698932 | 702619 | + | NAM | ||
| CDS seq | atggaaaacacctgcaagaggatctccaacacccccaactccatgccagtgctccaaggatgggcagacctcccagatgacctactgcagtgtgtccttgctctgttgagttcacccagtgaccttgctgccttcattgccacctgccccaattggcatgctgccttcaggtctgcaaaatctaccttacgcaccaccctcttccgtcctcttgccatccgcagctgcgcttcctctggcgatgatccagtagtatgggagctctttgatccagccaagccaaccatctgcatacaccgcgtgactccgccagattttctggcggggatggattatgaatgctgttcttatggccatgccatcttctctggcaatgccccctcgctgaaggacacaaccttcgccatcgtcgacgtgttcaccggcactagtgtttcacctccaccctgcccattctttacttttgtcaactcttgtgccctcacagctcctcttgattatcacaactcgcatttccttgtcgaggccaagcactccctgttcgcatggcgagttggaagcgaccattggtcgcagtgcagttgcccgcccaattctaaagctcttgagcagtttgtgcccttcaaaggccagctctatgccctcgagtatcagcagctttacaccgtcaagctggaaccccagctcagcctggaagaagtacaagttgtctggagcgtcgagatgtcggagcctgacctctgcgagccatcgctggtggtgtgtgatgacatgctcatcctgctcgccgcctccatcggcgaggccttccgccttgacctgtcatcccagcctgcaatgtgggtgaagatggaagaggaagagttgaaggaatgggccttcttcttcgatgagaagagggaggctttcaggccacggccaccattgtcttgcaagaacccacagagatggggagggatcggctatgattcatactcttggttcttccaaagggaaaaagcattttcaggctttcagctcttccagtttgctgaaaatatgcatgtccagaggcacatgcttttgtattcctggatacatgaagatgatttcgatggccctgaggctttccaggatcagatggatgatgaagtttcttatgcggcacataagtcccaacctgtatccgtccccacctgtcagtacttatgttttgactttttgacccacccaaactcattctcacctcatcaccgggcaccggccatggcgccttatccattaccgccgccgtcgccgccgcagcagcagcttcctccggcgagcagcagcaagccgaggaggccaccgcctcatcgctcccatggcggctacaagaacggcaccgtctccgtggattccggcgcccctcacgacgcccgaggcctccgggctctcatcaaggccttggccgcggagcacggcgaggccgcgccggccgtgcacgcccacgcggccaagctcggcctcgacggccgccgcgccgtccgtgacgggctcgtcgagctctacctcgcgcgcggcgagctcgcctccgcgcgggcgctcgtcgacgggttccccgccggccgggacgtcgtctcttgcacggccatggtgaccggccacgcgaggcacgggttcttggacgaggccgtggtgctgttcttcgccatggcggatgaccgcggcgtggccatcgacgccgtcgccgccgccgcggcgttctcggcgtgcgcgcagatcggggacctcgcgctgggtcgggaggcgcaccggcgcgtcgcggagaggaaggttgctatggatgtcgtcgcgtggaacgcgctggttgacatgtacgccaagtgcggcgacgcggcggcggcgcaccggtggttcaggaggatgcccgtgaagaagaacgtcgtctcctggaacacgatgatgtccgcgttcgcgcgcgccggtgagctcgaggaggcgctcgcgctgttccaggagatgcaggccgcggcggtgcgcccggacgacgcgacgttcgtcgccgccctcggcgcgtgcgcgcagctcggcgcgctggacaccggcaggtggttgcacgcatacatggggaggatggggcacagcgccgacggcgtcgtcggcaacgcgctgcttgacatgtacgccaagtgcggcgcggtcgaccaggccacggaggtgttcgacggcatggcgcggcgagacgtgtacacctacacatccatgatcctggggctcgcaatgcacggccgcggcgaggacgccctgtctctattcgccggcatgcaacgagccggcgtgacgccgaacgaggtgaccctcctcggcgtcctcacggcgtgctgtcacgccggacttgtcgaggaggggctccagcaactcaacgccatgccggaacctcgcatcgagcactacggctgcgtcgtcgacatgctcggccgcgccgggagactagacgaggcagaggagctcatcgcggcaatgccagtacactccgacgcgctcatctggagctcgctgctcgccgcatgccgcgcgcacggcgacgtcgagcgcgccgagcgggtgatgcgacggcgcgtggccgacgcggacgccggcgactacgtgctcatgtcgaacacgtacgcgtcgaatggccggcacggtgaggcggtgaaggtgagggggcagatgaggaggaacgagatcgacaaggtccccggctgcagcctcatcgagatcgacggcgtcgtgcacgaattcaaagcaatcccagcaaattccatccgataa
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| Protein seq | MENTCKRISNTPNSMPVLQGWADLPDDLLQCVLALLSSPSDLAAFIATCPNWHAAFRSAKSTLRTTLFRPLAIRSCASSGDDPVVWELFDPAKPTICIHRVTPPDFLAGMDYECCSYGHAIFSGNAPSLKDTTFAIVDVFTGTSVSPPPCPFFTFVNSCALTAPLDYHNSHFLVEAKHSLFAWRVGSDHWSQCSCPPNSKALEQFVPFKGQLYALEYQQLYTVKLEPQLSLEEVQVVWSVEMSEPDLCEPSLVVCDDMLILLAASIGEAFRLDLSSQPAMWVKMEEEELKEWAFFFDEKREAFRPRPPLSCKNPQRWGGIGYDSYSWFFQREKAFSGFQLFQFAENMHVQRHMLLYSWIHEDDFDGPEAFQDQMDDEVSYAAHKSQPVSVPTCQYLCFDFLTHPNSFSPHHRAPAMAPYPLPPPSPPQQQLPPASSSKPRRPPPHRSHGGYKNGTVSVDSGAPHDARGLRALIKALAAEHGEAAPAVHAHAAKLGLDGRRAVRDGLVELYLARGELASARALVDGFPAGRDVVSCTAMVTGHARHGFLDEAVVLFFAMADDRGVAIDAVAAAAAFSACAQIGDLALGREAHRRVAERKVAMDVVAWNALVDMYAKCGDAAAAHRWFRRMPVKKNVVSWNTMMSAFARAGELEEALALFQEMQAAAVRPDDATFVAALGACAQLGALDTGRWLHAYMGRMGHSADGVVGNALLDMYAKCGAVDQATEVFDGMARRDVYTYTSMILGLAMHGRGEDALSLFAGMQRAGVTPNEVTLLGVLTACCHAGLVEEGLQQLNAMPEPRIEHYGCVVDMLGRAGRLDEAEELIAAMPVHSDALIWSSLLAACRAHGDVERAERVMRRRVADADAGDYVLMSNTYASNGRHGEAVKVRGQMRRNEIDKVPGCSLIEIDGVVHEFKAIPANSIR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0114366 | RBH | 0.755420 | 0.301859 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g02400 | RBH | 0.285606 | 0.059928 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0114366 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0001010 | RBH | 0.063864 | 0.888035 | 0.643865 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0001010 | RBH | 0.0 | 0.0 | 0.161949 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0000970 | RBH | 0.422191 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0000970 | RBH | 0.048266 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0000990 | RBH | 1.417038 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0011800 | RBH | 1.758239 | 0.3510365 | 2.2534395 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0000960 | RBH | 0.000000 | 0.0 | 0.213376 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0012600 | RBH | 1.274632 | 0.9234985 | 0.6850105 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0000990 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0000990 | RBH | 0.061726 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0001010 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0000730 | SBH | 0.0 | 0.0 | 0.993971 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0000940 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G000970 | RBH | 0.232068 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0000980 | RBH | 0.0 | 0.0 | 0.531244 |
