Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_05g0028950 | OGI:05080260 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr05:30493572-30498444 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttattaaaccttcacttgtacattgacattcatccatgaagattattagcaacagaatcagtttaaaatccacccaagctatgctctactttctgctacgaacagaggaacatcatcaccagtaactaacatactcacgtctgtcacaaacagcatacataacccttcttctcatagcagttttccttgtccataagttacaagaggctggacacctctccctaatattcaaactttaaaaaagcatcccccaacttcccccaccggtcatccaattccagtttccaaagaagcacatggcatgagagccctgcatgcagaaatctctccaaatacaacaagattcaaggggcacatgtccgcgcaatgaaaacaaatgggaacctgtacaaacagcctaagcattgccatgagtccaccaaacagttgctaagggccaaagccccttagaaccaaccaaacctcttattttccggtctttagtactccacttcagcaggcgtgactcatggagtaggggctctgatgatatgcacaccgccaagattgagacatactagtactgaatcctatcatcgccatcgaaatttaggccctggatgccccgtatggtcgactcgtagttcttagcattcgatggatgcctgccagaaggcgtgcgcctgttgtcagaggagtcaaccatctgtggactccaccgcggggcccctgatctttggaatgcccccggacttgcatctgttgtacgactacgtgactggtcagcttcagtgcttggttctcggctactagagacagcaggtcgccttgaggatccgcttgaccgtcccaaaaaagtcgaactggagaactacacgccacttaaaggtcagatattacatagcaattgtgtataaagtagcacttcaggggcacacttttttgtcatggcactagcaacacaggcatcatgagaactctaagaactcaccattgcatctttagaagttgattgctcgtgtccgataggggacttctgcttggctaggctgcctgcatttatagctggaggtggaacctgacgccgcatcgcatccatatctgaccagccgcttctccttccctcttcggtggctacatcatatcagtagacagttaaccaccaaacaactagcaagctttgttaattggaaagactctacatgaatcaagcagtctcaagggttgaccaaacagtagaatattagaatggccgccatctatattttatttgattaaaatataatgatctctacaaatgcaattccttctaacggtttgacccaaccaaaggctccattcctactttactgtcttactaacagatttggtaatgatcgacccgtttgtaactcactaacactaacattacccctttttccatatcttatttggggtggtaggtgatagtaacatcattttattgaatatttccatgattatgagttgatagaaactgaaaaacacctgctgtttatctatgtgaaaataacttaggagctgcagtacaattacaatccactaaagaatagatttatacctgacagcctgttattatttgctataggagccatcgccgagctttgtcctgttgcaggggcctaaaataagatacatcagcaaaagaagagtttgaacataaacccccaacgtgcacacacagtgaggaaaagaggagtggtagttgttttcaactgacaatggcacgtggtggagcactggtcatctgtgactgttgatacttcaggattgtccagtcaaaaacataatcaaactgaaatcctacatgtagaaaaaaaaatcccatcaggtgctttcaaaaggtagcattttgcagtatatacaagtcataaacactgtttagtcactgaaataaatatcgagcatgtttaaagaaaatcaaaacaataaaccaaccctctcgaataaaaaggtctctgaacaatctcttcaaatattggtagtctggcgaatcttcaaagcgcagcgagcggcaataatggaagtaagatgcaaattcagtaggatatccacgacagagggcctatagttgagaaatcacaataagaaatagttcaggaaaggtggtggatgcaatttatagaataatatttacctcagttgaagtagcaattttcctttcgctgattttctcatatttttgtttcttgttcccagcttttagaccctgccatggaaggctggcagcaataaactataagttaatacagaggacgcagttgacgcagagatacaaaagaagaaattacttgaggttatgttgaacaaccttcctctcaagaagtacatcagtacatatccaagagattccatgtcatccctccggctttgttctatggagaagcataaaaccgtattatgatgctaggaagacatacaaaaaggtcatataagcttactaggaacaaataacatcaatgtcaatcttgacactgctactggataaaggaatacacatacagtaatcagataacttaccaattccaagatgagtgtttacacttgcatatcttgctgttcccgtcaagttcttgttctccctatgattaaaagaaaaattggtgtgtttaatttggaagtaatatacagcaactgccatttcaactttcaagtagattaaaggtatccttacctatatgggatgtgctggtgtgttgatgtatccctgtacttctttgcaagtccaaaatctatgacatagacctacacagagaatgaaagcaagggttaagtacacctataattaattcatgaatacgaacagatcaattgaacataactatacctgatttgcccttttacctaggcccatgagaaaattatctggcttaatatctctatgcaagaaagacttggagtgaacaaattcgacgcgattgatctgagagatagaagatggttttggcaaaacaaatgaactgaaatcagttgagaaatgctagctttgggtaaaacaaaaactagaaaataaccaaatgaatagcaaatgggtttaaattgactgctaatagtaccatttgatcagcaagcatcaaaacagtttttagagacagcttcctgttacaaaaactgaaaagatcttcaaggcttggtcctagtaagtccattaccaaaacattgtaatcaccctcgacaccaaaccacttaacatttggaattccagctgcagaacaaaagggtcattagttgatgtgtcagtttaaggaaaacccactggataaagtaacaagcaagcatcaagcatgcattacttcctccctggagtattctgtacagcttcgactcatacagcagttgtggatgcttggtcttcacattttcctagacaaaacattggagattaacaagggtgttatctattaagacaggaagaggactggtggaaacagcagaaacaataaattattctcacaaaatacgcgcagcattacgtcagatcaagtccatgcttgcgatggacgtcaaacaaatttaatcctaatcaaccgcaactggacaagaggcatttgtcagggtataacagtagtatacccagtggtacatctatatagctcttgaaaaaaaaaatcatgttttggcagagaactattaacagaacaaaagcttaagtagtaaaagttatgtttcaatagttttcctagcaacagaacacattaaaaactttaacacatactccagacaaccttttatattagaggtgccatatactatcaccaattcaactgcattaaaatatattgttaacaacaaactacattcgcatagcaaccagttgacagatttccaactcagaattcctccaatcaagtatagaacatgtcctctgcatctgagatccccacatctgaagcaatcgaatcataaatcgagtaacacaaagcaatactaggaaactcacgagcttaatagcgacctcctcgttggtctgaacattggtacctgcgagaacacacgcaaagaaaacaaaatagaagtcaccagaggctgatgggtaaagatgagaacttttgaatcaaaacgaggactttgggtagaattgcgcacgaaccaaggtagatctccccgaaggagccactgcccagcttgcggccaacacggaacttgttgccaatgcgtggctccatcactgtgtgcaccaagctccccgggacaatcccttaatcacaaggagtgggccctgccagacaaggatcgaaccaattcgatcagctgctccaggggaatttggagctaggacgcataacatagcggtgaggtaaatggggatttatttcttgctctctctcctcatccatttacgtgctgctgcaggtgttgagcacgacacacacaggtgttgttggtctcagaatagaaaaatattaagaaatcgatgcatcaacggaattgggcacggcggcgcggtcggaatggttttccctctctacctgatttttccttctccaagtgatctggatctcctccatcttccctacacagtttcgatcggatccaacttgtttggggctacaaacaaactgttactacttgcttgtattaagagaggttaaggctctggaattaaggaggagaagagcttcatccagatctactccaagagaagctagggttaacgcaagcaaattccagctcccggtgggagagagatgaatcagaaagaggatgggaggtgctcaccaggtccaggataccctgctctgctctgctctgctcgcgcagatggagatcggcagccgcgactcgtcttggcgcaaggagcggagcggaggagacgacgagacgcccccgggagatttctctttcttttacgccgcgagggaatgaagggtactcc
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| CDS seq | atggagccacgcattggcaacaagttccgtgttggccgcaagctgggcagtggctccttcggggagatctaccttggtaccaatgttcagaccaacgaggaggtcgctattaagctcgaaaatgtgaagaccaagcatccacaactgctgtatgagtcgaagctgtacagaatactccagggaggaactggaattccaaatgttaagtggtttggtgtcgagggtgattacaatgttttggtaatggacttactaggaccaagccttgaagatcttttcagtttttgtaacaggaagctgtctctaaaaactgttttgatgcttgctgatcaaatgatcaatcgcgtcgaatttgttcactccaagtctttcttgcatagagatattaagccagataattttctcatgggcctaggtaaaagggcaaatcaggtctatgtcatagattttggacttgcaaagaagtacagggatacatcaacacaccagcacatcccatatagggagaacaagaacttgacgggaacagcaagatatgcaagtgtaaacactcatcttggaattgaacaaagccggagggatgacatggaatctcttggatatgtactgatgtacttcttgagaggaagccttccatggcagggtctaaaagctgggaacaagaaacaaaaatatgagaaaatcagcgaaaggaaaattgctacttcaactgaggccctctgtcgtggatatcctactgaatttgcatcttacttccattattgccgctcgctgcgctttgaagattcgccagactaccaatatttgaagagattgttcagagacctttttattcgagagggatttcagtttgattatgtttttgactggacaatcctgaagtatcaacagtcacagatgaccagtgctccaccacgtgccattgcccctgcaacaggacaaagctcggcgatggctcctatagcaaataataacaggctgtcagccaccgaagagggaaggagaagcggctggtcagatatggatgcgatgcggcgtcaggttccacctccagctataaatgcaggcagcctagccaagcagaagtcccctatcggacacgagcaatcaacttctaaagatgcaatgttctccagttcgacttttttgggacggtcaagcggatcctcaaggcgacctgctgtctctagtagccgagaaccaagcactgaagctgaccagtcacgtagtcgtacaacagatgcaagtccgggggcattccaaagatcaggggccccgcggtggagtccacagatggttgactcctctgacaacaggcgcacgccttctggcaggcatccatcgaatgctaagaactacgagtcgaccatacggggcatccagggcctaaatttcgatggcgatgataggattcagtactag
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| Protein seq | MEPRIGNKFRVGRKLGSGSFGEIYLGTNVQTNEEVAIKLENVKTKHPQLLYESKLYRILQGGTGIPNVKWFGVEGDYNVLVMDLLGPSLEDLFSFCNRKLSLKTVLMLADQMINRVEFVHSKSFLHRDIKPDNFLMGLGKRANQVYVIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASVNTHLGIEQSRRDDMESLGYVLMYFLRGSLPWQGLKAGNKKQKYEKISERKIATSTEALCRGYPTEFASYFHYCRSLRFEDSPDYQYLKRLFRDLFIREGFQFDYVFDWTILKYQQSQMTSAPPRAIAPATGQSSAMAPIANNNRLSATEEGRRSGWSDMDAMRRQVPPPAINAGSLAKQKSPIGHEQSTSKDAMFSSSTFLGRSSGSSRRPAVSSSREPSTEADQSRSRTTDASPGAFQRSGAPRWSPQMVDSSDNRRTPSGRHPSNAKNYESTIRGIQGLNFDGDDRIQY |
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| Function | Casein kinase 1-like protein 2 [UniProtKB/Swiss-Prot:Q9CAI5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_05g0028950 | OsLiXu_05g0028950.02 | Chr05 | 30493572 | 30498444 | - | NAM | ||
| CDS seq | atggagccacgcattggcaacaagttccgtgttggccgcaagctgggcagtggctccttcggggagatctaccttggtaccaatgttcagaccaacgaggaggtcgctattaagctcgaaaatgtgaagaccaagcatccacaactgctgtatgagtcgaagctgtacagaatactccagggaggaactggaattccaaatgttaagtggtttggtgtcgagggtgattacaatgttttggtaatggacttactaggaccaagccttgaagatcttttcagtttttgtaacaggaagctgtctctaaaaactgttttgatgcttgctgatcaaatgatcaatcgcgtcgaatttgttcactccaagtctttcttgcatagagatattaagccagataattttctcatgggcctaggtaaaagggcaaatcaggtctatgtcatagattttggacttgcaaagaagtacagggatacatcaacacaccagcacatcccatatagggagaacaagaacttgacgggaacagcaagatatgcaagtgtaaacactcatcttggaattgaacaaagccggagggatgacatggaatctcttggatatgtactgatgtacttcttgagaggaagccttccatggcagggtctaaaagctgggaacaagaaacaaaaatatgagaaaatcagcgaaaggaaaattgctacttcaactgaggccctctgtcgtggatatcctactgaatttgcatcttacttccattattgccgctcgctgcgctttgaagattcgccagactaccaatatttgaagagattgttcagagacctttttattcgagagggatttcagtttgattatgtttttgactggacaatcctgaagtatcaacagtcacagatgaccagtgctccaccacgtgccattgcccctgcaacaggacaaagctcggcgatggctcctatagcaaataataacaggctgtcagccaccgaagagggaaggagaagcggctggtcagatatggatgcgatgcggcgtcaggttccacctccagctataaatgcaggcagcctagccaagcagaagtcccctatcggacacgagcaatcaacttctaaagatgcaatgttctccagttcgacttttttgggacggtcaagcggatcctcaaggcgacctgctgtctctagtagccgagaaccaagcactgaagctgaccagtcacgtagtcgtacaacagatgcaagtccgggggcattccaaagatcaggggccccgcggtggagtccacagatggttgactcctctgacaacaggcgcacgccttctggcaggcatccatcgaatgctaagaactacgagtcgaccatacggggcatccagggcctaaatttcgatggcgatgataggattcagtactag
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| Protein seq | MEPRIGNKFRVGRKLGSGSFGEIYLGTNVQTNEEVAIKLENVKTKHPQLLYESKLYRILQGGTGIPNVKWFGVEGDYNVLVMDLLGPSLEDLFSFCNRKLSLKTVLMLADQMINRVEFVHSKSFLHRDIKPDNFLMGLGKRANQVYVIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASVNTHLGIEQSRRDDMESLGYVLMYFLRGSLPWQGLKAGNKKQKYEKISERKIATSTEALCRGYPTEFASYFHYCRSLRFEDSPDYQYLKRLFRDLFIREGFQFDYVFDWTILKYQQSQMTSAPPRAIAPATGQSSAMAPIANNNRLSATEEGRRSGWSDMDAMRRQVPPPAINAGSLAKQKSPIGHEQSTSKDAMFSSSTFLGRSSGSSRRPAVSSSREPSTEADQSRSRTTDASPGAFQRSGAPRWSPQMVDSSDNRRTPSGRHPSNAKNYESTIRGIQGLNFDGDDRIQY
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_05g0028950 | OsLiXu_05g0028950.01 | Chr05 | 30493572 | 30498444 | - | NAM | ||
| CDS seq | atggagccacgcattggcaacaagttccgtgttggccgcaagctgggcagtggctccttcggggagatctaccttggtaccaatgttcagaccaacgaggaggtcgctattaagctcgaaaatgtgaagaccaagcatccacaactgctgtatgagtcgaagctgtacagaatactccagggaggaactggaattccaaatgttaagtggtttggtgtcgagggtgattacaatgttttggtaatggacttactaggaccaagccttgaagatcttttcagtttttgtaacaggaagctgtctctaaaaactgttttgatgcttgctgatcaaatgatcaatcgcgtcgaatttgttcactccaagtctttcttgcatagagatattaagccagataattttctcatgggcctaggtaaaagggcaaatcaggtctatgtcatagattttggacttgcaaagaagtacagggatacatcaacacaccagcacatcccatatagggagaacaagaacttgacgggaacagcaagatatgcaagtgtaaacactcatcttggaattgaacaaagccggagggatgacatggaatctcttggatatgtactgatgtacttcttgagaggaagccttccatggcagggtctaaaagctgggaacaagaaacaaaaatatgagaaaatcagcgaaaggaaaattgctacttcaactgaggccctctgtcgtggatatcctactgaatttgcatcttacttccattattgccgctcgctgcgctttgaagattcgccagactaccaatatttgaagagattgttcagagacctttttattcgagagggatttcagtttgattatgtttttgactggacaatcctgaagtatcaacagtcacagatgaccagtgctccaccacgtgccattgcccctgcaacaggacaaagctcggcgatggctcctatagcaaataataacaggctgtcagccaccgaagagggaaggagaagcggctggtcagatatggatgcgatgcggcgtcaggttccacctccagctataaatgcaggcagcctagccaagcagaagtcccctatcggacacgagcaatcaacttctaaagatgcaatgttctccagttcgacttttttgggacggtcaagcggatcctcaaggcgacctgctgtctctagtagccgagaaccaagcactgaagctgaccagtcacgtagtcgtacaacagatgcaagtccgggggcattccaaagatcaggggccccgcggtggagtccacagatggttgactcctctgacaacaggcgcacgccttctggcaggcatccatcgaatgctaagaactacgagtcgaccatacggggcatccagggcctaaatttcgatggcgatgataggattcagtactag
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| Protein seq | MEPRIGNKFRVGRKLGSGSFGEIYLGTNVQTNEEVAIKLENVKTKHPQLLYESKLYRILQGGTGIPNVKWFGVEGDYNVLVMDLLGPSLEDLFSFCNRKLSLKTVLMLADQMINRVEFVHSKSFLHRDIKPDNFLMGLGKRANQVYVIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASVNTHLGIEQSRRDDMESLGYVLMYFLRGSLPWQGLKAGNKKQKYEKISERKIATSTEALCRGYPTEFASYFHYCRSLRFEDSPDYQYLKRLFRDLFIREGFQFDYVFDWTILKYQQSQMTSAPPRAIAPATGQSSAMAPIANNNRLSATEEGRRSGWSDMDAMRRQVPPPAINAGSLAKQKSPIGHEQSTSKDAMFSSSTFLGRSSGSSRRPAVSSSREPSTEADQSRSRTTDASPGAFQRSGAPRWSPQMVDSSDNRRTPSGRHPSNAKNYESTIRGIQGLNFDGDDRIQY
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| SE | Chr05 | 30497787 | 30498288 | - | OsLiXu_05g0028950.02 | OsLiXu_05g0028950.01,OsLiXu_05g0028950.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 3.187991 | 2.461012 | 4.265718 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0593800 | RBH | 4.313148 | 2.637004 | 8.973125 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g51560 | RBH | 2.908102 | 1.885136 | 2.302377 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0593800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0029230 | RBH | 1.165395 | 42.071457 | 18.393864 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0029020 | RBH | 0.573695 | 7.963522 | 7.702780 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0029030 | RBH | 4.600621 | 35.203033 | 24.483652 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0029090 | RBH | 0.457476 | 1.532595 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0028950 | RBH | 11.749928 | 46.748188 | 46.423302 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0463300 | RBH | 10.8935595 | 19.9299745 | 29.424467 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0028650 | RBH | 0.907934 | 2.499293 | 3.804596 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0476800 | RBH | 20.206376 | 34.358402 | 60.1912955 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0028830 | RBH | 0.922089 | 0.561971 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0028710 | RBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0028980 | RBH | 15.993547 | 54.661957 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0021490 | RBH | 4.329478 | 4.964569 | 6.023587 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0029010 | RBH | 0.438982 | 15.266308 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G028530 | RBH | 1.286261 | 8.403525 | 11.149122 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0029030 | RBH | 3.109210 | 43.781883 | 20.409956 |
