Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_05g0028250 | OGI:05058510 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr05:29945669-29946818 | ||||||||
| Gene Symbol | OsOFP23, OsOFP20, OsOFP25, OsOFP23 | ||||||||||
| DNA seq | gacaccagctgctattacaaccatctgcaagcacaacgagaggaatccagagctagtaggcacacttgtgcattgtgtccgtcatggacatgagcaaggccaggcgccatggcgtcggcgtcggcgtccggctgaggcagcggctgtcgcagatcctactccactcttcctgcaccaccacatcggccacggcattcgtcaccaatgtcgccgtagcggccgggaacgccgccgccgcgcgccaagcaccgcctcccgccgccgccaacgacgcccatcagccgaggcccaagatcgatggcagtgtccggcgtcggcgccggcgcagcgcgcgggctcttgttcacatctccatcgactgctccggccccaccagcgcccgctctgtcggcgccgcggtcatgccatctccggtggcgccggccaaggacgtgaaggctgtcatcaggagcaaggctcgcggtgggaggccgcggtccccgtcgtacagctgctcgtcctccaccgtcaccgacgacgagctcccgccgttcagcagcagcgacggggagggcggcgagggggcggagacgaggtcgtcgacgctcttctcctccctcagcatctcctccgactccacctccgacttctacaacagcaccggcggcgggtcaaagcgccaccacaagaacccacctcgccgcgtgcctcgccgcgcgccgccgagaggcgccaatgccggcgacgcgaagccgcacgaagacaacaagggcggcgcgaagaaagccgacgacaagcacggcggcggcgtcgtcggcgtggccgcggagggcagcatggcggtggtgaagcggtcgcacaacccgtacgccgacttccggagctcgatggtggagatggtggtggagcggcgcatctgcggcgccgacgccatgggcgacctcctgatgtcgtacctgtcgctcaactcaaggcgccaccacccggccatcctcgccgccttcgaggacgtctgggaagccgtcttcgccacgccctgatcgatcgatcgatcgatctccatccttgtaacaaatgcaatgtacagcttgttcttccaagcatcgattgttctccggaacatgtaacttaatttattattagtagccgcttaagaatttatttatcctta
More
|
||||||||||
| CDS seq | atggacatgagcaaggccaggcgccatggcgtcggcgtcggcgtccggctgaggcagcggctgtcgcagatcctactccactcttcctgcaccaccacatcggccacggcattcgtcaccaatgtcgccgtagcggccgggaacgccgccgccgcgcgccaagcaccgcctcccgccgccgccaacgacgcccatcagccgaggcccaagatcgatggcagtgtccggcgtcggcgccggcgcagcgcgcgggctcttgttcacatctccatcgactgctccggccccaccagcgcccgctctgtcggcgccgcggtcatgccatctccggtggcgccggccaaggacgtgaaggctgtcatcaggagcaaggctcgcggtgggaggccgcggtccccgtcgtacagctgctcgtcctccaccgtcaccgacgacgagctcccgccgttcagcagcagcgacggggagggcggcgagggggcggagacgaggtcgtcgacgctcttctcctccctcagcatctcctccgactccacctccgacttctacaacagcaccggcggcgggtcaaagcgccaccacaagaacccacctcgccgcgtgcctcgccgcgcgccgccgagaggcgccaatgccggcgacgcgaagccgcacgaagacaacaagggcggcgcgaagaaagccgacgacaagcacggcggcggcgtcgtcggcgtggccgcggagggcagcatggcggtggtgaagcggtcgcacaacccgtacgccgacttccggagctcgatggtggagatggtggtggagcggcgcatctgcggcgccgacgccatgggcgacctcctgatgtcgtacctgtcgctcaactcaaggcgccaccacccggccatcctcgccgccttcgaggacgtctgggaagccgtcttcgccacgccctga
More
|
||||||||||
| Protein seq | MDMSKARRHGVGVGVRLRQRLSQILLHSSCTTTSATAFVTNVAVAAGNAAAARQAPPPAAANDAHQPRPKIDGSVRRRRRRSARALVHISIDCSGPTSARSVGAAVMPSPVAPAKDVKAVIRSKARGGRPRSPSYSCSSSTVTDDELPPFSSSDGEGGEGAETRSSTLFSSLSISSDSTSDFYNSTGGGSKRHHKNPPRRVPRRAPPRGANAGDAKPHEDNKGGAKKADDKHGGGVVGVAAEGSMAVVKRSHNPYADFRSSMVEMVVERRICGADAMGDLLMSYLSLNSRRHHPAILAAFEDVWEAVFATP |
||||||||||
| Function | Transcription repressor OFP8 [UniProtKB/Swiss-Prot:Q94CV1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_05g0028250 | OsLiXu_05g0028250.01 | Chr05 | 29945669 | 29946818 | + | NAM | ||
| CDS seq | atggacatgagcaaggccaggcgccatggcgtcggcgtcggcgtccggctgaggcagcggctgtcgcagatcctactccactcttcctgcaccaccacatcggccacggcattcgtcaccaatgtcgccgtagcggccgggaacgccgccgccgcgcgccaagcaccgcctcccgccgccgccaacgacgcccatcagccgaggcccaagatcgatggcagtgtccggcgtcggcgccggcgcagcgcgcgggctcttgttcacatctccatcgactgctccggccccaccagcgcccgctctgtcggcgccgcggtcatgccatctccggtggcgccggccaaggacgtgaaggctgtcatcaggagcaaggctcgcggtgggaggccgcggtccccgtcgtacagctgctcgtcctccaccgtcaccgacgacgagctcccgccgttcagcagcagcgacggggagggcggcgagggggcggagacgaggtcgtcgacgctcttctcctccctcagcatctcctccgactccacctccgacttctacaacagcaccggcggcgggtcaaagcgccaccacaagaacccacctcgccgcgtgcctcgccgcgcgccgccgagaggcgccaatgccggcgacgcgaagccgcacgaagacaacaagggcggcgcgaagaaagccgacgacaagcacggcggcggcgtcgtcggcgtggccgcggagggcagcatggcggtggtgaagcggtcgcacaacccgtacgccgacttccggagctcgatggtggagatggtggtggagcggcgcatctgcggcgccgacgccatgggcgacctcctgatgtcgtacctgtcgctcaactcaaggcgccaccacccggccatcctcgccgccttcgaggacgtctgggaagccgtcttcgccacgccctga
More
|
|||||||
| Protein seq | MDMSKARRHGVGVGVRLRQRLSQILLHSSCTTTSATAFVTNVAVAAGNAAAARQAPPPAAANDAHQPRPKIDGSVRRRRRRSARALVHISIDCSGPTSARSVGAAVMPSPVAPAKDVKAVIRSKARGGRPRSPSYSCSSSTVTDDELPPFSSSDGEGGEGAETRSSTLFSSLSISSDSTSDFYNSTGGGSKRHHKNPPRRVPRRAPPRGANAGDAKPHEDNKGGAKKADDKHGGGVVGVAAEGSMAVVKRSHNPYADFRSSMVEMVVERRICGADAMGDLLMSYLSLNSRRHHPAILAAFEDVWEAVFATP
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.200182 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0583600 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g36970 | SBH | 0.0 | 0.287860 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0583600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0028530 | RBH | 0.0 | 4.462809 | 2.078596 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0028320 | RBH | 0.0 | 1.842188 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0028320 | RBH | 0.0 | 1.931939 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0028380 | RBH | 0.0 | 0.051115 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0028270 | RBH | 0.0 | 0.0 | 1.911946 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0454600 | RBH | 0.9397545 | 0.6223785 | 0.5493735 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0028010 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0467500 | RBH | 1.4342155 | 0.2553245 | 1.493938 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0028120 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_Ung0000370 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0028260 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0025100 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0028300 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G027810 | RBH | 0.0 | 0.758897 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0028330 | RBH | 0.0 | 0.0 | 0.670294 |
