Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_05g0027850 | OGI:05077920 | 15/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr05:29629188-29632726 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tatctttttgggggtctcttcattgctactactcgtcgatactggtgaaatatttacatcagggaacatcaaacatggatgaacgagccgagctggttcttcattgataaacagaagggatgaacagggaatttacatcagagggctacacaaaccaaaggtcttaagcatgctagctccataaccagtttgcttacgtaccttaaaacaaatgtaatcgaattacacgagatgtagccgtcaatctgcagatacaactccagcgtgctccatccgtcacggacccctgtactgcctgaagcatgaaaggcatccttgtcgctgatctacagggatcatgcctccacccttcgaagtatcgatcgcctccaacatagacaccacctcggccatctcaggtcgcttgtcagggttcgcatcccagcagcgtttcatcacgtttgccagagaacttggacagcagcgtggcatctcaggccttaaattctaatcaaacaaggattgtagcacacattaaatcaaatcagcagctagacagaaagcagaaaataagccagctagaaaagagggttttacctgacgaacaacagcagacgtgacctctgagaagctcaaatctggatatggcatatcacagcagtatatctcccataaacaaatcccaaagctataaacatcgcatttcctgttgtatggactgccgttgagaacctgcatatcacatgccaatataaggcatataacatgcaaggtagtaacttacatacacaataaatatcaaatacccttcctaggaccgaggtacacacaactgtttgatgcaaaaaaaattgacattttttcttaattaattatgtgctgcaattagacaagtagtggcaaagaggaaatgaagaaactgaggaaaaaacaatgagcagtccatgtcaaagatcggatacctcaggagccatgtaaccaagggtgcctgtttcccctgtcatatcactgggatttgaagcctcaagccgagcaacaccaaaatcagcaattttcacagttcttgtcttgtcaagaagcatattttcagtctttacatcacggtgcacgatcttctttgagtgaagataacttaacctattgaatagttaaatgtcaaaactattccaatcaattagagcttttttttttgagggacaatcaattagagttttgaaggataaagagtgagtgaaatagttaaaagccccagaagaaaaactggcaaatgatcaaattgatgcttaccccctggcaaggtcaagagctatctgaaccacaactttaaaagctaacttctttctcctattctttatcagaaatccttttagtgaacccccagcaaggtactccacaacaacacagcagatattacttggcatggcaagatgtccgctttctgtttgaatatctagatccctggcgcccattatagcccctataaactgtatatagaatttcaacctgttgttagggtacatgacaaatagatagacaacagaagaaatatgaaaagacatatactttgacattataagctatgcttcaagcactgcgaatgctaggtcatttgattttggtgcaacaaatccaaacctcgatacatgtaaggacttcgtttttttgctgaacaatttaacagctgctatgaattatataccacaggtagcagagtagataagacgataaggctgttatccagttggtaatgccactacacagacatcactttcaatatttagttaaggacgctagtgttactcacattgacacatagacactgatcaaatatatgattcgaatgcacttgatatggcatttaagcatttaggcatttagaaatttagtcaaatataagtatgccagttatgtataaatctgttctgatttcatgcattttatggtcgagggaactgtaattaacccaaaataattgaaagaagcatgacttgttgaaataaatagtacctttgtaacatttggatggtccagcttatgccagacagagacctcttgtgaaaaagctgctcttagtgctgcgatgtcttgttcggacctatgcccatcctctccccagtcaagtaatttcactggagaataatatgaatcaatgaattattttgaaaagagatgtttgtaatgagaacatacaatttcccattggaaactgtcaaataaaaacaagatttgagaattgatctaagcaaaggtgccaaggttgggagaggagcaggggtaccaccattacaccatcaaattgtcccttctcttttggtaagggcacacaaagacaatttcggtcttaggaagatccactttttgtaggggaattaaattgatgggcttttccaaaaaaaaaaaatgcaaaatgatggaatccatgctgatatgggggaatggacgaaagatagctaacaatccctggggaatatgtttctcaaaaatagaatgtgaacatcctataaactatgcatgtacaacaactaatcatcaaccaattgcttatagacatgctcaggtccgatagatgaatcatcaaaagggattctttttgtgctgttgccgtgtcatgtgtttgcatcgatggataatctcaatctggtgaaaaagtacacaaacttataggttgcacatccctccatactaaaaggtcgacattttcggctttctttggaaccgcaaagcaactttaccatgaaattcctagccagggatcacaagaaccatggccaagtgaactgctgatgagcgagggcacgtcaaaagccgcccaatccaaccgatgtcacgggggaacaccatgaaaagccaaaaggggcagcggcatcaactcccgcaatttgctaaaaggggtaaagaaaaggagcacccaagaggccaagacagtgaccggcggttccactcgccgtcagcgccgcattggcagcgcgatttcgtcgaacaccgtacgggcgcaagcgagtgcatggatatcgcggtggttggtatcaagtaaaaaaactgggagaaatggcgcgcgcgggcgggcgcacctgcgacgtcgtggccgtcgtagacgccgcggtggacggtgccgaaggtgccgcgggcgatgacccccctgacgacgagcttggcggggtcgatctcccactcctccctccgctgcctgcggttctgcgagtagtgcgcggcggcgagcgcgggcggcttgctgccacgctggtcggcggccgcctcctccttgcgcttctccatggtccacgcgcggctcaggtggcgctccagctgctcgtccaggctcttgaggtcgatctggtctgcccgcacgaaccctccatcgccgccgccctccttcatcccgccgtgtggtggtggtggtggtggtgagcaacagagcaagtgagcaagcgagcgagcagtggctaggctaggctaggagaggaggaggagggaagagagtggcgaggcggagtggcatgtgagcacatgggctgccgaggcaggcagcggccggggagggggagggggagggagacggg
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| CDS seq | atgaaggagggcggcggcgatggagggttcgtgcgggcagaccagatcgacctcaagagcctggacgagcagctggagcgccacctgagccgcgcgtggaccatggagaagcgcaaggaggaggcggccgccgaccagcgtggcagcaagccgcccgcgctcgccgccgcgcactactcgcagaaccgcaggcagcggagggaggagtgggagatcgaccccgccaagctcgtcgtcaggggggtcatcgcccgcggcaccttcggcaccgtccaccgcggcgtctacgacggccacgacgtcgcagtgaaattacttgactggggagaggatgggcataggtccgaacaagacatcgcagcactaagagcagctttttcacaagaggtctctgtctggcataagctggaccatccaaatgttacaaagtttataggggctataatgggcgccagggatctagatattcaaacagaaagcggacatcttgccatgccaagtaatatctgctgtgttgttgtggagtaccttgctgggggttcactaaaaggatttctgataaagaataggagaaagaagttagcttttaaagttgtggttcagatagctcttgaccttgccagggggttaagttatcttcactcaaagaagatcgtgcaccgtgatgtaaagactgaaaatatgcttcttgacaagacaagaactgtgaaaattgctgattttggtgttgctcggcttgaggcttcaaatcccagtgatatgacaggggaaacaggcacccttggttacatggctcctgaggttctcaacggcagtccatacaacaggaaatgcgatgtttatagctttgggatttgtttatgggagatatactgctgtgatatgccatatccagatttgagcttctcagaggtcacgtctgctgttgttcgtcagaatttaaggcctgagatgccacgctgctgtccaagttctctggcaaacgtgatgaaacgctgctgggatgcgaaccctgacaagcgacctgagatggccgaggtggtgtctatgttggaggcgatcgatacttcgaagggtggaggcatgatccctgtagatcagcgacaaggatgcctttcatgcttcaggcagtacaggggtccgtga
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| Protein seq | MKEGGGDGGFVRADQIDLKSLDEQLERHLSRAWTMEKRKEEAAADQRGSKPPALAAAHYSQNRRQRREEWEIDPAKLVVRGVIARGTFGTVHRGVYDGHDVAVKLLDWGEDGHRSEQDIAALRAAFSQEVSVWHKLDHPNVTKFIGAIMGARDLDIQTESGHLAMPSNICCVVVEYLAGGSLKGFLIKNRRKKLAFKVVVQIALDLARGLSYLHSKKIVHRDVKTENMLLDKTRTVKIADFGVARLEASNPSDMTGETGTLGYMAPEVLNGSPYNRKCDVYSFGICLWEIYCCDMPYPDLSFSEVTSAVVRQNLRPEMPRCCPSSLANVMKRCWDANPDKRPEMAEVVSMLEAIDTSKGGGMIPVDQRQGCLSCFRQYRGP |
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| Function | Serine/threonine-protein kinase STY13 [UniProtKB/Swiss-Prot:Q9ZQ31] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_05g0027850 | OsLiXu_05g0027850.01 | Chr05 | 29629188 | 29632726 | - | NAM | ||
| CDS seq | atgaaggagggcggcggcgatggagggttcgtgcgggcagaccagatcgacctcaagagcctggacgagcagctggagcgccacctgagccgcgcgtggaccatggagaagcgcaaggaggaggcggccgccgaccagcgtggcagcaagccgcccgcgctcgccgccgcgcactactcgcagaaccgcaggcagcggagggaggagtgggagatcgaccccgccaagctcgtcgtcaggggggtcatcgcccgcggcaccttcggcaccgtccaccgcggcgtctacgacggccacgacgtcgcagtgaaattacttgactggggagaggatgggcataggtccgaacaagacatcgcagcactaagagcagctttttcacaagaggtctctgtctggcataagctggaccatccaaatgttacaaagtttataggggctataatgggcgccagggatctagatattcaaacagaaagcggacatcttgccatgccaagtaatatctgctgtgttgttgtggagtaccttgctgggggttcactaaaaggatttctgataaagaataggagaaagaagttagcttttaaagttgtggttcagatagctcttgaccttgccagggggttaagttatcttcactcaaagaagatcgtgcaccgtgatgtaaagactgaaaatatgcttcttgacaagacaagaactgtgaaaattgctgattttggtgttgctcggcttgaggcttcaaatcccagtgatatgacaggggaaacaggcacccttggttacatggctcctgaggttctcaacggcagtccatacaacaggaaatgcgatgtttatagctttgggatttgtttatgggagatatactgctgtgatatgccatatccagatttgagcttctcagaggtcacgtctgctgttgttcgtcagaatttaaggcctgagatgccacgctgctgtccaagttctctggcaaacgtgatgaaacgctgctgggatgcgaaccctgacaagcgacctgagatggccgaggtggtgtctatgttggaggcgatcgatacttcgaagggtggaggcatgatccctgtagatcagcgacaaggatgcctttcatgcttcaggcagtacaggggtccgtga
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| Protein seq | MKEGGGDGGFVRADQIDLKSLDEQLERHLSRAWTMEKRKEEAAADQRGSKPPALAAAHYSQNRRQRREEWEIDPAKLVVRGVIARGTFGTVHRGVYDGHDVAVKLLDWGEDGHRSEQDIAALRAAFSQEVSVWHKLDHPNVTKFIGAIMGARDLDIQTESGHLAMPSNICCVVVEYLAGGSLKGFLIKNRRKKLAFKVVVQIALDLARGLSYLHSKKIVHRDVKTENMLLDKTRTVKIADFGVARLEASNPSDMTGETGTLGYMAPEVLNGSPYNRKCDVYSFGICLWEIYCCDMPYPDLSFSEVTSAVVRQNLRPEMPRCCPSSLANVMKRCWDANPDKRPEMAEVVSMLEAIDTSKGGGMIPVDQRQGCLSCFRQYRGP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.200512 | 0.106943 | 0.814560 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0577700 | RBH | 2.411286 | 1.327457 | 4.019282 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g50190 | RBH | 0.573410 | 0.665355 | 0.190348 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0577700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0028140 | RBH | 1.321581 | 1.454622 | 4.527731 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0027940 | RBH | 0.071808 | 2.093972 | 0.777411 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0027950 | RBH | 4.680688 | 4.698207 | 3.488075 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0027990 | RBH | 0.823060 | 0.136708 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0027880 | RBH | 6.957035 | 7.534816 | 10.100841 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0449000 | RBH | 1.6058235 | 2.0094355 | 3.25391 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0027580 | RBH | 0.606410 | 0.433275 | 0.224611 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0462200 | SBH | 11.1032225 | 28.3792285 | 45.630041 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0027710 | RBH | 0.050704 | 0.342528 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0027600 | RBH | 0.915452 | 31.306868 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0027830 | RBH | 4.405981 | 3.936557 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0026040 | RBH | 0.264736 | 0.229452 | 1.474291 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0027870 | RBH | 0.617910 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G027390 | RBH | 0.987352 | 1.460473 | 2.185959 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0027850 | RBH | 3.085007 | 8.904587 | 1.202383 |
