Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_05g0027620 | OGI:05077510 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr05:29520309-29523052 | ||||||||
| Gene Symbol | PPR6, OsPPR6 | ||||||||||
| DNA seq | atgccgccaccgccagctagaacccacccgaaccctcccctcctccacctcctcgcctcccaccgctcgccgcagccgctcccgctcacgccggcgcacggccacctcccgccgcggaagcgtccccgcggagtcggctccgcagcggcgccgccgccgccgcgtgccgccgcctccgcggaggccacctactctgaccggagcgccgcgctgcgggcgctctgtagccatggccagctggcgcaggcgctctggctcctcgagtcctccccggagccgcccgacgagggcgcctacgtcgcgctgttccggctctgcgagtggcgccgcgcggtcgacgccgggatgcgggcgtgcgcgcgcgccgacgccgagcacccgagcttcgggctccgcctcgggaacgctatgctcagcatgctcgtcaggttcggggagatatggcacgcgtggagggtgttcgccaaaatgcctgagagggacgtcttctcctggaacgtcatggtaggcgggtacggcaaggtgggcttcctcgaggaggcgctggacctgtactacaggatgctgtgggcagggatgaggccggatgtctacacgttcccctgcgtgctgcgtacctgcgggggcatccctgactggaggatggggagggaggtgcatgctcatgtgcttcgatttggttttggagacgaggtcgatgtattgaatgctctggtgaccatgtatgccaaatgtggggatattgtggcggcgaggaaggtgtttgatggaatggccatgacagactgcatatcatggaatgcgatgatagctgggcattttgagaatcatgagtgtgaggcagggttggagttgtttctcaccatgctggagaatgaggtacaaccgaatctcatgacaataaccagtgtgactgttgcatctggaatgttgtctgaagtgggttttgcaaaagaaatgcatgggtttgctgtaaagagaggtttcgccattgatgttgcattctgtaactcgttgattcagatgtacaccagtctcgggaggatgggggatgcaggtaaaatattctcaagaatggaaactaaagatgccatgtcatggactgcaatgatatcggggtatgagaaaaatggtttcccagataaagcccttgaagtttatgcactgatggaattgcataatgtaaatcctgatgatgttacaattgcaagtgcccttgctgcttgtgcctgcttggggaggttagatgtaggcatcaaattgcatgagcttgctcagaacaagggattcatcaggtatgttgtcgttgctaatgcgctccttgaaatgtatgctaaatccaagcacattgataaggctattgaagtatttaagttcatggctgagaaggatgtggtatcatggagttcaatgattgctggattttgctttaaccacaggagttttgaggctttgtactatttccggtatatgctaggacatgtaaaacccaattctgttacatttatagctgctctaagtgcttgtgctgctactggggctttgagatctggtaaggaaatccatgcatatgttttaaggtgtggtattggatctgaaggttatgtacccaatgctcttctagacttgtatgtgaaatgtggccagacaagctatgcttgggcacaattcagcgtgcatagtgaaaaggatgttgtctcttggaatataatgctttctggttttgtagctcatgggcttggagatattgctttatcactctttaaccaaatggtagaaatgggagagcatccggatgaagttacatttgttgctttattgtgtgcttgtagtagggctggaatggttattcaaggctgggagctttttcacatgatgactgagaaattttcaatagttccaaatctcaagcactatgcatgtatggtagatctattgagtcgtgttgggaaattaacagaagcttacaacctcataaatcgaatgcctatcaaacctgatgctgcagtgtggggagccttgttgaatggatgccggatccaccgacatgttgaacttggcgagcttgctgcaaaagttatccttgagttggaacctaatgatgttgcatatcatgttcttctgtgtgatttatatactgatgctggcaaatgggctcaagtggctagagtgagaaaaaccatgcgagagaagggattggagcaagataatggatgtagctgggttgaggttaagggagtaactcacgcatttcttacagatgatgaatcacatccacagataaaagaaataaatgttgttctacatggcatatatgagcgaatgaaagcatgtggttttgctcctgttgagtccttagaagataaagaagtatccgaggacgacatcttgtgcggtcacagtgaaagattagctgtagcttttggtttgatcaatactacacctggtaccactatttctgtcacaaagaaccgatacacttgccagagttgtcatgtgatattcaaggcaatttctgaaattgttcgaagagagataactgttagagacactaagcaattacactgctttaaggatggagattgttcatgtggagatataggatatggatgaaaaacttatagaaagagggctgtataacaatacaagatgtggccatgcattattatgcatctgctgcaagcactgctacagaaatcctttgcaacaacagttattaaccacgtctaacaatacaaatactc
More
|
||||||||||
| CDS seq | atgccgccaccgccagctagaacccacccgaaccctcccctcctccacctcctcgcctcccaccgctcgccgcagccgctcccgctcacgccggcgcacggccacctcccgccgcggaagcgtccccgcggagtcggctccgcagcggcgccgccgccgccgcgtgccgccgcctccgcggaggccacctactctgaccggagcgccgcgctgcgggcgctctgtagccatggccagctggcgcaggcgctctggctcctcgagtcctccccggagccgcccgacgagggcgcctacgtcgcgctgttccggctctgcgagtggcgccgcgcggtcgacgccgggatgcgggcgtgcgcgcgcgccgacgccgagcacccgagcttcgggctccgcctcgggaacgctatgctcagcatgctcgtcaggttcggggagatatggcacgcgtggagggtgttcgccaaaatgcctgagagggacgtcttctcctggaacgtcatggtaggcgggtacggcaaggtgggcttcctcgaggaggcgctggacctgtactacaggatgctgtgggcagggatgaggccggatgtctacacgttcccctgcgtgctgcgtacctgcgggggcatccctgactggaggatggggagggaggtgcatgctcatgtgcttcgatttggttttggagacgaggtcgatgtattgaatgctctggtgaccatgtatgccaaatgtggggatattgtggcggcgaggaaggtgtttgatggaatggccatgacagactgcatatcatggaatgcgatgatagctgggcattttgagaatcatgagtgtgaggcagggttggagttgtttctcaccatgctggagaatgaggtacaaccgaatctcatgacaataaccagtgtgactgttgcatctggaatgttgtctgaagtgggttttgcaaaagaaatgcatgggtttgctgtaaagagaggtttcgccattgatgttgcattctgtaactcgttgattcagatgtacaccagtctcgggaggatgggggatgcaggtaaaatattctcaagaatggaaactaaagatgccatgtcatggactgcaatgatatcggggtatgagaaaaatggtttcccagataaagcccttgaagtttatgcactgatggaattgcataatgtaaatcctgatgatgttacaattgcaagtgcccttgctgcttgtgcctgcttggggaggttagatgtaggcatcaaattgcatgagcttgctcagaacaagggattcatcaggtatgttgtcgttgctaatgcgctccttgaaatgtatgctaaatccaagcacattgataaggctattgaagtatttaagttcatggctgagaaggatgtggtatcatggagttcaatgattgctggattttgctttaaccacaggagttttgaggctttgtactatttccggtatatgctaggacatgtaaaacccaattctgttacatttatagctgctctaagtgcttgtgctgctactggggctttgagatctggtaaggaaatccatgcatatgttttaaggtgtggtattggatctgaaggttatgtacccaatgctcttctagacttgtatgtgaaatgtggccagacaagctatgcttgggcacaattcagcgtgcatagtgaaaaggatgttgtctcttggaatataatgctttctggttttgtagctcatgggcttggagatattgctttatcactctttaaccaaatggtagaaatgggagagcatccggatgaagttacatttgttgctttattgtgtgcttgtagtagggctggaatggttattcaaggctgggagctttttcacatgatgactgagaaattttcaatagttccaaatctcaagcactatgcatgtatggtagatctattgagtcgtgttgggaaattaacagaagcttacaacctcataaatcgaatgcctatcaaacctgatgctgcagtgtggggagccttgttgaatggatgccggatccaccgacatgttgaacttggcgagcttgctgcaaaagttatccttgagttggaacctaatgatgttgcatatcatgttcttctgtgtgatttatatactgatgctggcaaatgggctcaagtggctagagtgagaaaaaccatgcgagagaagggattggagcaagataatggatgtagctgggttgaggttaagggagtaactcacgcatttcttacagatgatgaatcacatccacagataaaagaaataaatgttgttctacatggcatatatgagcgaatgaaagcatgtggttttgctcctgttgagtccttagaagataaagaagtatccgaggacgacatcttgtgcggtcacagtgaaagattagctgtagcttttggtttgatcaatactacacctggtaccactatttctgtcacaaagaaccgatacacttgccagagttgtcatgtgatattcaaggcaatttctgaaattgttcgaagagagataactgttagagacactaagcaattacactgctttaaggatggagattgttcatgtggagatataggatatggatga
More
|
||||||||||
| Protein seq | MPPPPARTHPNPPLLHLLASHRSPQPLPLTPAHGHLPPRKRPRGVGSAAAPPPPRAAASAEATYSDRSAALRALCSHGQLAQALWLLESSPEPPDEGAYVALFRLCEWRRAVDAGMRACARADAEHPSFGLRLGNAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLWAGMRPDVYTFPCVLRTCGGIPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAARKVFDGMAMTDCISWNAMIAGHFENHECEAGLELFLTMLENEVQPNLMTITSVTVASGMLSEVGFAKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMISGYEKNGFPDKALEVYALMELHNVNPDDVTIASALAACACLGRLDVGIKLHELAQNKGFIRYVVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFEALYYFRYMLGHVKPNSVTFIAALSACAATGALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIMLSGFVAHGLGDIALSLFNQMVEMGEHPDEVTFVALLCACSRAGMVIQGWELFHMMTEKFSIVPNLKHYACMVDLLSRVGKLTEAYNLINRMPIKPDAAVWGALLNGCRIHRHVELGELAAKVILELEPNDVAYHVLLCDLYTDAGKWAQVARVRKTMREKGLEQDNGCSWVEVKGVTHAFLTDDESHPQIKEINVVLHGIYERMKACGFAPVESLEDKEVSEDDILCGHSERLAVAFGLINTTPGTTISVTKNRYTCQSCHVIFKAISEIVRREITVRDTKQLHCFKDGDCSCGDIGYG |
||||||||||
| Function | Pentatricopeptide repeat-containing protein At1g15510, chloroplastic [UniProtKB/Swiss-Prot:Q9M9E2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_05g0027620 | OsLiXu_05g0027620.01 | Chr05 | 29520309 | 29523052 | + | NAM | ||
| CDS seq | atgccgccaccgccagctagaacccacccgaaccctcccctcctccacctcctcgcctcccaccgctcgccgcagccgctcccgctcacgccggcgcacggccacctcccgccgcggaagcgtccccgcggagtcggctccgcagcggcgccgccgccgccgcgtgccgccgcctccgcggaggccacctactctgaccggagcgccgcgctgcgggcgctctgtagccatggccagctggcgcaggcgctctggctcctcgagtcctccccggagccgcccgacgagggcgcctacgtcgcgctgttccggctctgcgagtggcgccgcgcggtcgacgccgggatgcgggcgtgcgcgcgcgccgacgccgagcacccgagcttcgggctccgcctcgggaacgctatgctcagcatgctcgtcaggttcggggagatatggcacgcgtggagggtgttcgccaaaatgcctgagagggacgtcttctcctggaacgtcatggtaggcgggtacggcaaggtgggcttcctcgaggaggcgctggacctgtactacaggatgctgtgggcagggatgaggccggatgtctacacgttcccctgcgtgctgcgtacctgcgggggcatccctgactggaggatggggagggaggtgcatgctcatgtgcttcgatttggttttggagacgaggtcgatgtattgaatgctctggtgaccatgtatgccaaatgtggggatattgtggcggcgaggaaggtgtttgatggaatggccatgacagactgcatatcatggaatgcgatgatagctgggcattttgagaatcatgagtgtgaggcagggttggagttgtttctcaccatgctggagaatgaggtacaaccgaatctcatgacaataaccagtgtgactgttgcatctggaatgttgtctgaagtgggttttgcaaaagaaatgcatgggtttgctgtaaagagaggtttcgccattgatgttgcattctgtaactcgttgattcagatgtacaccagtctcgggaggatgggggatgcaggtaaaatattctcaagaatggaaactaaagatgccatgtcatggactgcaatgatatcggggtatgagaaaaatggtttcccagataaagcccttgaagtttatgcactgatggaattgcataatgtaaatcctgatgatgttacaattgcaagtgcccttgctgcttgtgcctgcttggggaggttagatgtaggcatcaaattgcatgagcttgctcagaacaagggattcatcaggtatgttgtcgttgctaatgcgctccttgaaatgtatgctaaatccaagcacattgataaggctattgaagtatttaagttcatggctgagaaggatgtggtatcatggagttcaatgattgctggattttgctttaaccacaggagttttgaggctttgtactatttccggtatatgctaggacatgtaaaacccaattctgttacatttatagctgctctaagtgcttgtgctgctactggggctttgagatctggtaaggaaatccatgcatatgttttaaggtgtggtattggatctgaaggttatgtacccaatgctcttctagacttgtatgtgaaatgtggccagacaagctatgcttgggcacaattcagcgtgcatagtgaaaaggatgttgtctcttggaatataatgctttctggttttgtagctcatgggcttggagatattgctttatcactctttaaccaaatggtagaaatgggagagcatccggatgaagttacatttgttgctttattgtgtgcttgtagtagggctggaatggttattcaaggctgggagctttttcacatgatgactgagaaattttcaatagttccaaatctcaagcactatgcatgtatggtagatctattgagtcgtgttgggaaattaacagaagcttacaacctcataaatcgaatgcctatcaaacctgatgctgcagtgtggggagccttgttgaatggatgccggatccaccgacatgttgaacttggcgagcttgctgcaaaagttatccttgagttggaacctaatgatgttgcatatcatgttcttctgtgtgatttatatactgatgctggcaaatgggctcaagtggctagagtgagaaaaaccatgcgagagaagggattggagcaagataatggatgtagctgggttgaggttaagggagtaactcacgcatttcttacagatgatgaatcacatccacagataaaagaaataaatgttgttctacatggcatatatgagcgaatgaaagcatgtggttttgctcctgttgagtccttagaagataaagaagtatccgaggacgacatcttgtgcggtcacagtgaaagattagctgtagcttttggtttgatcaatactacacctggtaccactatttctgtcacaaagaaccgatacacttgccagagttgtcatgtgatattcaaggcaatttctgaaattgttcgaagagagataactgttagagacactaagcaattacactgctttaaggatggagattgttcatgtggagatataggatatggatga
More
|
|||||||
| Protein seq | MPPPPARTHPNPPLLHLLASHRSPQPLPLTPAHGHLPPRKRPRGVGSAAAPPPPRAAASAEATYSDRSAALRALCSHGQLAQALWLLESSPEPPDEGAYVALFRLCEWRRAVDAGMRACARADAEHPSFGLRLGNAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLWAGMRPDVYTFPCVLRTCGGIPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAARKVFDGMAMTDCISWNAMIAGHFENHECEAGLELFLTMLENEVQPNLMTITSVTVASGMLSEVGFAKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMISGYEKNGFPDKALEVYALMELHNVNPDDVTIASALAACACLGRLDVGIKLHELAQNKGFIRYVVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFEALYYFRYMLGHVKPNSVTFIAALSACAATGALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIMLSGFVAHGLGDIALSLFNQMVEMGEHPDEVTFVALLCACSRAGMVIQGWELFHMMTEKFSIVPNLKHYACMVDLLSRVGKLTEAYNLINRMPIKPDAAVWGALLNGCRIHRHVELGELAAKVILELEPNDVAYHVLLCDLYTDAGKWAQVARVRKTMREKGLEQDNGCSWVEVKGVTHAFLTDDESHPQIKEINVVLHGIYERMKACGFAPVESLEDKEVSEDDILCGHSERLAVAFGLINTTPGTTISVTKNRYTCQSCHVIFKAISEIVRREITVRDTKQLHCFKDGDCSCGDIGYG
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.236713 | 0.255237 | 0.610049 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0574800 | RBH | 6.302598 | 6.603355 | 0.387982 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g49920 | RBH | 4.577996 | 4.376348 | 0.111958 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0574800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0027890 | RBH | 0.585730 | 0.0 | 1.940839 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0027680 | RBH | 0.302798 | 0.0 | 0.848934 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0027700 | RBH | 2.847790 | 0.000000 | 2.356267 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0027740 | RBH | 0.307222 | 0.025862 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0027650 | RBH | 9.854573 | 0.0 | 4.936815 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0447000 | RBH | 7.3896545 | 3.339466 | 0.9031625 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0027340 | RBH | 1.007150 | 0.029227 | 0.410475 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0459800 | RBH | 4.84287 | 2.840273 | 5.517048 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0027490 | RBH | 0.266621 | 0.019355 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0027380 | RBH | 0.977499 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0027610 | RBH | 2.569821 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0026320 | RBH | 1.743612 | 0.149156 | 0.030039 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0027630 | RBH | 0.561948 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G027150 | RBH | 0.549633 | 0.0 | 0.237411 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0027620 | RBH | 3.522399 | 1.440612 | 1.129983 |
