Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
OsLiXu_05g0026790		OGI:05075990 \| 16/16			LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)			Chr05:28979252-28984294		Homologues MicroCollinearity RGI-JBrowse
Gene Symbol		WOX9C, OsWOX9C, DWL2, OsDWL2, DWL2/WOX9C
DNA seq		atggcctcaccgaacaggcactggccgagcatgttcaggtccaatcttgcctgcaacatccagcagcagcagcagcctgacatgaacggcaacggcagctcgtcctcttccttcctcctctcgccacctactgctgcgaccaccggcaacggcaagccctccttgctctcctcaggtagtacatgcatgtcactgttcagttcttgcctaggttagggtttctttggggagttcttggttaatttgatcggtgtaatttgcagggtgtgaggaggggacgaggaatccggagccgaagccgcggtggaacccgaggccggagcagataaggatactggaggggatcttcaactccgggatggtgaacccgccgcgcgacgagatccgccgcatccgcctgcagctgcaggagtacggccaggtcggcgacgccaacgtcttctactggttccagaaccgcaagtcccgcaccaagaacaagctgcgcgccgccggccaccaccaccaccacggccgcgccgccgccctgccgcgcgcgtcggcgccgccgtcgacgaacatcgcactcccctctgcagcggcggcggcgcccttgacgccgccgcggcgccatctcctcgccgcgacctcctcctcgtcctcctcctccgaccgctcctccgggtccagcaagtcggtgaaaccagctgctgccgcgctgctgacgtcagccgccatcgaccttttctcgccagcgccggcgccgacgacccagctgcccgcgtgccagctctactaccatagccatcccacgccgctggcacgtgatgatcagctcatcacctcgccggagtcgtcgtcgctcctcctgcagtggccggcgagccagtacatgccggcgacggagctcggcggcgtcctcggctcgtcgtcccacacgcaaaccccggcagcgatcaccacccacccatcgacgatctcacccagcgtgctcctcggcctatgcaacgaggcactagggcagcatcagcaagagaccatggacgacatgatgatcacctgctccaacccctccaaggtgttcgaccaccattccatggacaacatgagctgcaccgacgcggtgagcgccgtgaacagggacgacgagaaggcgaggctggggttactgcactacggcatcggcgtcactgctgctgcaaatccggcaccacatcatcatcatcatcatcatcttgcctctcctgtgcatgatgctgtctcggctgcagatgctagtacggcggccatgatccttccattcaccaccactgctgctgcgacgccgagcaacgtcgtcgctacaagctctgcactcgctgatcagttgcaaggtatgtttaattattagtactatgttcatgcatgcacggatgcccctgcaaaacaaagttcaattggaacaactagccatgcatagcacattcatggtcatgttgcaagtcgtactactactgctactgcttccccgtcccaagatataatcattttttattctgacacgatcttcgagatgctactttgaccaacaatatctatataaaagtaagatgttttaaataaaatgagttgcatattatgataaattatttaatgataaatttaataatatcaattttacgtggttgatatttctattattttgctattaattaatagtcaaaattaaaaatatttgacttgacaatatgccaaaaatgtttatattttggatggatggagtactatactctggccatagctagtacaacttgtctcttcccttttttgttggttatcatatgcatggattggatgctagctcagcagtttgcattgttcatgtttgtaagcatgtgcatagaagtgtctcctcacggggggtcaccaccaagctcagctcagctcagctcagcttggtgtagtgcatgaaacgttgtgcatgcatggccatggccatggctagctatggcctgtctcgatctacctgcaaccttggctctagcaagccttggcataattggagaaagcagagagtactcttgccgccctgatgattcgagtaatggctagagacagtgcaacaacgtgtccttttgtgtgttagctttgaacagttgcagcattggattgtgttgcattgcgtgcagccacaacagtgggcgtttatatgtagtacacggttggctccaatctcgatctagcgatcacatcggaatgccaacagctacatatgtacgcatgcatggttgcaggcaatgagacaaggttaggctatgtaaaaatctcctgttccatgcaccgatcttgtcatgctatatgcagcatatatgctagctgttgatgcaaagagggacatttccatgacagaagggtagaggggaacttggcagcttgtatgtgtgttatatgcatatgcatgaacgcgtagatctaggctgttgaaactatagcatagaaagggccgataactgtgagctgttctagccccccaagagtggacaaatatggatggtttcactaagaaagagtaattatattggctgttcaatttcttgatgggaaagcatcacatagacggatagacatagaccatgcatgcacatatctatatatatggtactcctacattccacacacattttgggtgtattccaaatgaacacttttatgtcatgaaaacaacagcaaattaagcacagaacacgttatgcatcttgagcgtctaggagtgtagtacagtagttgtaacttcgtctcacaaaagacttcgtaacctggataagtacagctagcttgttggttgttgccttgttcacagttcacatgcatagtagaaccatacgctaaccgagagaacctagatattaattgagaaattaaagggtcatgcatgatcatgtattgtacaatatgaaagtgatttcatatccctcgagagttatcccatcgttttgtgtatgccatctaaatagtcataaaaaaatttggtaaaatagattaatatAaaatatatcactttataaatatgcaagttaaaatttaacttctaccagttgtaacaaaaataacaaatatagcttattttgtttttttttaacttatagaagttggatttagtctataaatctttttaaaaaaagttttataactatttaaatgatatgtaaataacgaggacttcccctcgaagatgaaaattcatatccattgtacagtatgagaagagattagatgctataaaatatttataaaaaacaaactgaaaaaatagatggataaattaatcatgagacagaacaaagagtggagtatcgatcaacagtgtcgtagtccagcttaggtctgggacgtggatcgagatcataaatggcacccttgtatggtcatgtcgcagtgcttcttttcaagaggcgataccggggttggggtaaaaagatctatcgaaggcttttttgatcaatttgcatgcgtacgttgttgaaaggattgaaggcgacggtgctcaatcaaaatcctctcttcttggttgttgctgctcgatctccaagcaaacacttgacttgaaagctggtagctctatctttcagggcgtttgttccgagattggacgtgtgcatggcatccttcttctcaaaaagatgctttcaacatcgcctctctctggcttggatttccgcatgcatagatatgctagctttttggcagtcataaacttgccagaggtttgaatagcagactgactttttgcatgcacagatcagattattggtttgaggtttggaataggagagttttatataggattgaagtatatgaatttttcccatatgccgccctttggtttgaagtttttgagcgaaaatttttatatccttgaTttttttttttttgaagatttcaaatgtaagctcaatacaccatcgtctatcctcaatcttcatctctccttgcaactatattctaatagtaatattttttcctctaaaatttctctaaatttcatgcaaaggatctgaatgaccaattggactagttgttgtgttttcagttcatgtaagcctatatatatatacatatgtcatgacatcccggagtcctaaagatgttaattaaatttggtttgaatatataggtttaattaaagtttggtttgaaaatacaattccttgcaagctgcagggctgttggatgctgggttgctgcagggaggggcggcgccgccgccgccctcggcgacggtggtggcggtgagccgcgacgacgagacgatgtgcaccaagaccacgagctacagcttcccggcgacgatgcacctcaacgtgaagatgttcggcgaggcggccgtgctggtgcgctacagcggcgagccggtgctcgtcgacgactccggcgtcaccgtcgagccgctgcagcagggcgcgacctactacgtgctggtaattaaacctcaatttgctcacattaactcatataatatgtgtcgtgctaataaataatcaaaaaattaactagcattttctcgagctaattaattgagtgactttacagtcgttacaaagggaagttatcatattttctaatgtaaaatttggtaactctcgttatcttcagtattattaaaagatatcaaaatttgcattaaaaatattaatacctattaagtactataaaattactctaattaatatgtggcttaatttatttatcatttttatgtactttcttatgcatgcaggtatctgaggaagctgtgcattgaagccgtattaccttgattacatccacaattcggcactgatcatgcttgctgcatgcgatcgaatcatcgatcatctaagagattctaagttaattagtaattcgctcagtagtttggtaatagctagctagcaaccttcatcgatctgttatttcattcagtacgtacatgtctacttaaaatcactgtcgtgtagtactgtacgtgttttgctcgtctgatcaaacagcaacatgcatgacggttttaattttgatgcaataaccagtggagtaaaccacata More
CDS seq		atggcctcaccgaacaggcactggccgagcatgttcaggtccaatcttgcctgcaacatccagcagcagcagcagcctgacatgaacggcaacggcagctcgtcctcttccttcctcctctcgccacctactgctgcgaccaccggcaacggcaagccctccttgctctcctcagggtttctttggggagagtacggccaggtcggcgacgccaacgtcttctactggttccagaaccgcaagtcccgcaccaagaacaagctgcgcgccgccggccaccaccaccaccacggccgcgccgccgccctgccgcgcgcgtcggcgccgccgtcgacgaacatcgcactcccctctgcagcggcggcggcgcccttgacgccgccgcggcgccatctcctcgccgcgacctcctcctcgtcctcctcctccgaccgctcctccgggtccagcaagtcggtgaaaccagctgctgccgcgctgctgacgtcagccgccatcgaccttttctcgccagcgccggcgccgacgacccagctgcccgcgtgccagctctactaccatagccatcccacgccgctggcacgtgatgatcagctcatcacctcgccggagtcgtcgtcgctcctcctgcagtggccggcgagccagtacatgccggcgacggagctcggcggcgtcctcggctcgtcgtcccacacgcaaaccccggcagcgatcaccacccacccatcgacgatctcacccagcgtgctcctcggcctatgcaacgaggcactagggcagcatcagcaagagaccatggacgacatgatgatcacctgctccaacccctccaaggtgttcgaccaccattccatggacaacatgagctgcaccgacgcggtgagcgccgtgaacagggacgacgagaaggcgaggctggggttactgcactacggcatcggcgtcactgctgctgcaaatccggcaccacatcatcatcatcatcatcatcttgcctctcctgtgcatgatgctgtctcggctgcagatgctagtacggcggccatgatccttccattcaccaccactgctgctgcgacgccgagcaacgtcgtcgctacaagctctgcactcgctgatcagttgcaagggctgttggatgctgggttgctgcagggaggggcggcgccgccgccgccctcggcgacggtggtggcggtgagccgcgacgacgagacgatgtgcaccaagaccacgagctacagcttcccggcgacgatgcacctcaacgtgaagatgttcggcgaggcggccgtgctggtgcgctacagcggcgagccggtgctcgtcgacgactccggcgtcaccgtcgagccgctgcagcagggcgcgacctactacgtgctggtatctgaggaagctgtgcattga More
Protein seq		MASPNRHWPSMFRSNLACNIQQQQQPDMNGNGSSSSSFLLSPPTAATTGNGKPSLLSSGFLWGEYGQVGDANVFYWFQNRKSRTKNKLRAAGHHHHHGRAAALPRASAPPSTNIALPSAAAAAPLTPPRRHLLAATSSSSSSSDRSSGSSKSVKPAAAALLTSAAIDLFSPAPAPTTQLPACQLYYHSHPTPLARDDQLITSPESSSLLLQWPASQYMPATELGGVLGSSSHTQTPAAITTHPSTISPSVLLGLCNEALGQHQQETMDDMMITCSNPSKVFDHHSMDNMSCTDAVSAVNRDDEKARLGLLHYGIGVTAAANPAPHHHHHHHLASPVHDAVSAADASTAAMILPFTTTAAATPSNVVATSSALADQLQGLLDAGLLQGGAAPPPPSATVVAVSRDDETMCTKTTSYSFPATMHLNVKMFGEAAVLVRYSGEPVLVDDSGVTVEPLQQGATYYVLVSEEAVH
Function		WUSCHEL-related homeobox 12 [UniProtKB/Swiss-Prot:A3B6V0]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsLiXu_05g0026790	OsLiXu_05g0026790.01	Chr05	28979252	28984294	+	NAM
CDS seq	atggcctcaccgaacaggcactggccgagcatgttcaggtccaatcttgcctgcaacatccagcagcagcagcagcctgacatgaacggcaacggcagctcgtcctcttccttcctcctctcgccacctactgctgcgaccaccggcaacggcaagccctccttgctctcctcagggtttctttggggagagtacggccaggtcggcgacgccaacgtcttctactggttccagaaccgcaagtcccgcaccaagaacaagctgcgcgccgccggccaccaccaccaccacggccgcgccgccgccctgccgcgcgcgtcggcgccgccgtcgacgaacatcgcactcccctctgcagcggcggcggcgcccttgacgccgccgcggcgccatctcctcgccgcgacctcctcctcgtcctcctcctccgaccgctcctccgggtccagcaagtcggtgaaaccagctgctgccgcgctgctgacgtcagccgccatcgaccttttctcgccagcgccggcgccgacgacccagctgcccgcgtgccagctctactaccatagccatcccacgccgctggcacgtgatgatcagctcatcacctcgccggagtcgtcgtcgctcctcctgcagtggccggcgagccagtacatgccggcgacggagctcggcggcgtcctcggctcgtcgtcccacacgcaaaccccggcagcgatcaccacccacccatcgacgatctcacccagcgtgctcctcggcctatgcaacgaggcactagggcagcatcagcaagagaccatggacgacatgatgatcacctgctccaacccctccaaggtgttcgaccaccattccatggacaacatgagctgcaccgacgcggtgagcgccgtgaacagggacgacgagaaggcgaggctggggttactgcactacggcatcggcgtcactgctgctgcaaatccggcaccacatcatcatcatcatcatcatcttgcctctcctgtgcatgatgctgtctcggctgcagatgctagtacggcggccatgatccttccattcaccaccactgctgctgcgacgccgagcaacgtcgtcgctacaagctctgcactcgctgatcagttgcaagggctgttggatgctgggttgctgcagggaggggcggcgccgccgccgccctcggcgacggtggtggcggtgagccgcgacgacgagacgatgtgcaccaagaccacgagctacagcttcccggcgacgatgcacctcaacgtgaagatgttcggcgaggcggccgtgctggtgcgctacagcggcgagccggtgctcgtcgacgactccggcgtcaccgtcgagccgctgcagcagggcgcgacctactacgtgctggtatctgaggaagctgtgcattga More
Protein seq	MASPNRHWPSMFRSNLACNIQQQQQPDMNGNGSSSSSFLLSPPTAATTGNGKPSLLSSGFLWGEYGQVGDANVFYWFQNRKSRTKNKLRAAGHHHHHGRAAALPRASAPPSTNIALPSAAAAAPLTPPRRHLLAATSSSSSSSDRSSGSSKSVKPAAAALLTSAAIDLFSPAPAPTTQLPACQLYYHSHPTPLARDDQLITSPESSSLLLQWPASQYMPATELGGVLGSSSHTQTPAAITTHPSTISPSVLLGLCNEALGQHQQETMDDMMITCSNPSKVFDHHSMDNMSCTDAVSAVNRDDEKARLGLLHYGIGVTAAANPAPHHHHHHHLASPVHDAVSAADASTAAMILPFTTTAAATPSNVVATSSALADQLQGLLDAGLLQGGAAPPPPSATVVAVSRDDETMCTKTTSYSFPATMHLNVKMFGEAAVLVRYSGEPVLVDDSGVTVEPLQQGATYYVLVSEEAVH More

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	0.0	0.0	0.0

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_05g0564500	SBH	0.0	0.0	0.0
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os05g48990	RBH	0.0	0.0	0.0
Nipponbare \| IRGSP 1.0 \| RAP-db	Os05g0564500	RBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_05g0027060	RBH	0.0	0.0	0.0
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_05g0026850	RBH	0.0	0.0	0.0
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_05g0026840	RBH	0.0	0.0	0.0
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_05g0026900	RBH	0.0	0.0	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_05g0026830	RBH	0.000000	0.0	0.0
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_05G0437400	RBH	0	0.0722755	0.7453405
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_05g0026490	RBH	0.0	0.0	0.0
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_05G0449300	RBH	0.009191	0.030148	2.0379815
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_05g0026670	RBH	0.0	0.0	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_05g0026550	RBH	0.0	0.0	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_05g0026740	RBH	0.0	0.0	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_01g0027640	RBH	0.0	0.0	0.0
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_05g0026800	RBH	0.0	0.0	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_05G026270	RBH	0.0	0.0	0.000000
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_05g0026800	RBH	0.0	0.0	0.0

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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