Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_05g0024290 | OGI:05071140 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr05:27242614-27246124 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | caaacaaacactatgtaagcatttgtcaagggcattttggttacataagggtaacttgacaaaagtacagttcaaactccagaggacaaaagtacaaaatcatttccctcgcagaaaacagtgtgacaacgagggctacaatgtcgaccagaccattgaccaacaatggcaacaggaacccatattatggtgtgctacagcaatacatacattctacttacaagcgatgacgacaaaatggacgcaacatattcgcacctgcaacagctccagctacttgcttccttacctattgaattgcgactttggtgctgggctaaaacctataataaggggaactaaaaggagattcaaccaacgtccacataatacaatttataggttggcagctctctccagaaacatgaaagtatggacaccgtgcaatatatacagcgatatgtacagcttacaggaatagacgtcataactcaaaacctccattcaattgaacagataaagatggtctagccaagttgtccagcggtgtttccaaggtgattactagtcctgaactgccgacttgtccattccacttggatcgcccgagctgcggatgcatagcaacacacaaggacatcagttagcagtaaagtaaagcgtgtgcttgattataaacagaagcgtaacatgatctggagagcttacagaaacagctgtgaaggccgagggatgtctggcacaagagaaaccacacattacattgagttcctccttcaatgaatggacaaactctgcccgtatcccaggatcgcttcctccaaatgtggggcaaacactgatgcatgtagttccatcaaggaaatcagaagtggaaaataaatgtgggacccaaaaaaatatagtcgagtaaccttgtgctgggcctgactaacgtggctttgagttgcagaagtgtttatatctaactacctgacttgaatgctgggcctcaccataaggccagatcttttccacgctaaggcttgtgcaactccaaaagaaagagaattgtcaggccattgaaacataggggtgaaccttgtgccttgtttgctcttcaaaagcaaagcaacaggaaataagcatggcaggtgaaataattaggaacaggtcttggaaggatgaagtggagctacagttggcttattatgcagacactaaccttgaaggagaagcttaatcttgtttccccaggacattttccatgagcttgaagcaaaccaccaaagaatgggaaaaatccacttgctgttatcccttctccagcaacgtatgttagctgtccattcgggaactgcacatccatgaaagactgaaacaaatagccaagttaacaatatgagggtagaaatgagactgttgcaaaaagttatgagtaggtttgatattcttgttatacaagattctacatccgagtccaaatcaagtcactgcacagccaattgcatcagaaagtaatcatcaatataggaaactttctacaaagaacacgataagtacatgtatcatttgatagcacgaatacacgtgacaaaatgtaacagtaaagtatgttaaacattgttactggatttgcatgcccgtagcatgaaaagtgatgatttgcaaaaccagtccatcatactgaagtataaaaataactgatacctgatagcaactaggaaacagggggaattgaggaaagaaaaagacaaagaaggaacatgcatacttacacaggttacaggattgaggcacatcattgacatcaccatccatcttctatgttttgaccagatagctggacataaggagtgcattttgttctaaaataaacacacaagttttagactattagtatgggtatgcaacaaaatacaagccaatgcacgttgataggcattatttgcaccataattatatcattgagattctaaaacactatgatgcaaaaagtttatggcatgtaagatttcagatcaagacctgggtagctgggaagaaaagtaccttgcgatcatagccataccaaagaaggtgctgctttgacagatgaataggcaaaagaagtgtagagtcacgaacaaataataaaggtcccagctgaacaaggaaaagcggagcattttcatcgccagaatttgaaccaccacgcgacgactccaacctccaaaggtccccacgtgcaacaactgaagtctcaaagtcatggtgcctggtctcgtatgttgctgagatatttatggttccctgcatcatgttcagcataataatatgtacttcagcaaatggaattcacactgcgctccagctatcattagatttaaccaaatgtatgcaccagccactacaaaatttgaacctttacatttagtaccgatcctgtatgcttatacttaaattctgatattagaaaaataatttttgaactatatgcatggctattctagaagcatatggacagaatctttctatgagcatgcaaaagaagattccaagcatattaaatcaatgagttccaagcaccaaagccctctaaaatctcactacctcagcattcagacaagatacacagttttacaccccaaataaacctagaacctatacaaatgtcactcctaagcacattctgagtatccgattgaacttgcttccaattacagttgcagaattgtgtaacaggtaagtggtaattacgacgcaacatttgatcagcaaatcggtaatgtgtaccttagccttcttgaagttaccaatagtcccaatatcgcatccgaacccatcatcttcctcatccaaaccaccttccgcaccaccaacgctagtcgcagtggcacttccagtggctgccgcggccgctgcagcagctacctcgagaggccctctgtctccgaccctctccgatgcgagccccttatcctcagctctctccaccgcgagagccacctccccctcattcaccgtcgccgccgccgccgccgcagcagcaggctgcggcggaatcgcctcccacttccggccccgcgcgctctccgccaggaacgggacaaggatctgccgcgccagctgctgcacggcgcccccgacgcacgccccgagctcggaccccgcctggccgagccgcccgccgatctcgacgaacgacgcgacggccgcggcggggaggtcggcggcgcccctcccgcccccggcccgcctccctccgacgacgaaggggacgacggggaggtcgatctcgaagggtatcagcttggccggcagcgcgggggcggaccagtggagctgcggcgggtgcgcgtggaggaggaggcccgagaagccctgcgcgaggcggtccgcgaggtcctgcccgtgccgctgcaccccgacccacgcgtcgaaggagatctccatggctccacgccgcgccgccgctagggcttggagcggcggcggcgaggaatcgagaagcggaagagaTttttttttgtggaggcgaagcgaagcgggggatggagtggtggtggaggag
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| CDS seq | atggagatctccttcgacgcgtgggtcggggtgcagcggcacgggcaggacctcgcggaccgcctcgcgcagggcttctcgggcctcctcctccacgcgcacccgccgcagctccactggtccgcccccgcgctgccggccaagctgatacccttcgagatcgacctccccgtcgtccccttcgtcgtcggagggaggcgggccgggggcgggaggggcgccgccgacctccccgccgcggccgtcgcgtcgttcgtcgagatcggcgggcggctcggccaggcggggtccgagctcggggcgtgcgtcgggggcgccgtgcagcagctggcgcggcagatccttgtcccgttcctggcggagagcgcgcggggccggaagtgggaggcgattccgccgcagcctgctgctgcggcggcggcggcggcgacggtgaatgagggggaggtggctctcgcggtggagagagctgaggataaggggctcgcatcggagagggtcggagacagagggcctctcgaggtagctgctgcagcggccgcggcagccactggaagtgccactgcgactagcgttggtggtgcggaaggtggtttggatgaggaagatgatgggttcggatgcgatattgggactattggtaacttcaagaaggctaagggaaccataaatatctcagcaacatacgagaccaggcaccatgactttgagacttcagttgttgcacgtggggacctttggaggttggagtcgtcgcgtggtggttcaaattctggcgatgaaaatgctccgcttttccttgttcagctgggacctttattatttgttcgtgactctacacttcttttgcctattcatctgtcaaagcagcaccttctttggtatggctatgatcgcaagaacaaaatgcactccttatgtccagctatctggtcaaaacatagaagatggatggtgatgtcaatgatgtgcctcaatcctgtaacctgttctttcatggatgtgcagttcccgaatggacagctaacatacgttgctggagaagggataacagcaagtggatttttcccattctttggtggtttgcttcaagctcatggaaaatgtcctggggaaacaagattaagcttctccttcaagagcaaacaaggcacaaggttcacccctatgtttcaatggcctgacaattctctttcttttggagttgcacaagccttagcgtggaaaagatctggccttatggtgaggcccagcattcaagtcagtgtttgccccacatttggaggaagcgatcctgggatacgggcagagtttgtccattcattgaaggaggaactcaatgtaatgtgtggtttctcttgtgccagacatccctcggccttcacagctgtttctctcgggcgatccaagtggaatggacaagtcggcagttcaggactagtaatcaccttggaaacaccgctggacaacttggctagaccatctttatctgttcaattgaatggaggttttgagttatga
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| Protein seq | MEISFDAWVGVQRHGQDLADRLAQGFSGLLLHAHPPQLHWSAPALPAKLIPFEIDLPVVPFVVGGRRAGGGRGAADLPAAAVASFVEIGGRLGQAGSELGACVGGAVQQLARQILVPFLAESARGRKWEAIPPQPAAAAAAAATVNEGEVALAVERAEDKGLASERVGDRGPLEVAAAAAAAATGSATATSVGGAEGGLDEEDDGFGCDIGTIGNFKKAKGTINISATYETRHHDFETSVVARGDLWRLESSRGGSNSGDENAPLFLVQLGPLLFVRDSTLLLPIHLSKQHLLWYGYDRKNKMHSLCPAIWSKHRRWMVMSMMCLNPVTCSFMDVQFPNGQLTYVAGEGITASGFFPFFGGLLQAHGKCPGETRLSFSFKSKQGTRFTPMFQWPDNSLSFGVAQALAWKRSGLMVRPSIQVSVCPTFGGSDPGIRAEFVHSLKEELNVMCGFSCARHPSAFTAVSLGRSKWNGQVGSSGLVITLETPLDNLARPSLSVQLNGGFEL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_05g0024290 | OsLiXu_05g0024290.01 | Chr05 | 27242614 | 27246124 | - | NAM | ||
| CDS seq | atggagatctccttcgacgcgtgggtcggggtgcagcggcacgggcaggacctcgcggaccgcctcgcgcagggcttctcgggcctcctcctccacgcgcacccgccgcagctccactggtccgcccccgcgctgccggccaagctgatacccttcgagatcgacctccccgtcgtccccttcgtcgtcggagggaggcgggccgggggcgggaggggcgccgccgacctccccgccgcggccgtcgcgtcgttcgtcgagatcggcgggcggctcggccaggcggggtccgagctcggggcgtgcgtcgggggcgccgtgcagcagctggcgcggcagatccttgtcccgttcctggcggagagcgcgcggggccggaagtgggaggcgattccgccgcagcctgctgctgcggcggcggcggcggcgacggtgaatgagggggaggtggctctcgcggtggagagagctgaggataaggggctcgcatcggagagggtcggagacagagggcctctcgaggtagctgctgcagcggccgcggcagccactggaagtgccactgcgactagcgttggtggtgcggaaggtggtttggatgaggaagatgatgggttcggatgcgatattgggactattggtaacttcaagaaggctaagggaaccataaatatctcagcaacatacgagaccaggcaccatgactttgagacttcagttgttgcacgtggggacctttggaggttggagtcgtcgcgtggtggttcaaattctggcgatgaaaatgctccgcttttccttgttcagctgggacctttattatttgttcgtgactctacacttcttttgcctattcatctgtcaaagcagcaccttctttggtatggctatgatcgcaagaacaaaatgcactccttatgtccagctatctggtcaaaacatagaagatggatggtgatgtcaatgatgtgcctcaatcctgtaacctgttctttcatggatgtgcagttcccgaatggacagctaacatacgttgctggagaagggataacagcaagtggatttttcccattctttggtggtttgcttcaagctcatggaaaatgtcctggggaaacaagattaagcttctccttcaagagcaaacaaggcacaaggttcacccctatgtttcaatggcctgacaattctctttcttttggagttgcacaagccttagcgtggaaaagatctggccttatggtgaggcccagcattcaagtcagtgtttgccccacatttggaggaagcgatcctgggatacgggcagagtttgtccattcattgaaggaggaactcaatgtaatgtgtggtttctcttgtgccagacatccctcggccttcacagctgtttctctcgggcgatccaagtggaatggacaagtcggcagttcaggactagtaatcaccttggaaacaccgctggacaacttggctagaccatctttatctgttcaattgaatggaggttttgagttatga
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| Protein seq | MEISFDAWVGVQRHGQDLADRLAQGFSGLLLHAHPPQLHWSAPALPAKLIPFEIDLPVVPFVVGGRRAGGGRGAADLPAAAVASFVEIGGRLGQAGSELGACVGGAVQQLARQILVPFLAESARGRKWEAIPPQPAAAAAAAATVNEGEVALAVERAEDKGLASERVGDRGPLEVAAAAAAAATGSATATSVGGAEGGLDEEDDGFGCDIGTIGNFKKAKGTINISATYETRHHDFETSVVARGDLWRLESSRGGSNSGDENAPLFLVQLGPLLFVRDSTLLLPIHLSKQHLLWYGYDRKNKMHSLCPAIWSKHRRWMVMSMMCLNPVTCSFMDVQFPNGQLTYVAGEGITASGFFPFFGGLLQAHGKCPGETRLSFSFKSKQGTRFTPMFQWPDNSLSFGVAQALAWKRSGLMVRPSIQVSVCPTFGGSDPGIRAEFVHSLKEELNVMCGFSCARHPSAFTAVSLGRSKWNGQVGSSGLVITLETPLDNLARPSLSVQLNGGFEL
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_05g0024290 | OsLiXu_05g0024290.02 | Chr05 | 27242614 | 27246124 | - | NAM | ||
| CDS seq | atggagatctccttcgacgcgtgggtcggggtgcagcggcacgggcaggacctcgcggaccgcctcgcgcagggcttctcgggcctcctcctccacgcgcacccgccgcagctccactggtccgcccccgcgctgccggccaagctgatacccttcgagatcgacctccccgtcgtccccttcgtcgtcggagggaggcgggccgggggcgggaggggcgccgccgacctccccgccgcggccgtcgcgtcgttcgtcgagatcggcgggcggctcggccaggcggggtccgagctcggggcgtgcgtcgggggcgccgtgcagcagctggcgcggcagatccttgtcccgttcctggcggagagcgcgcggggccggaagtgggaggcgattccgccgcagcctgctgctgcggcggcggcggcggcgacggtgaatgagggggaggtggctctcgcggtggagagagctgaggataaggggctcgcatcggagagggtcggagacagagggcctctcgaggtagctgctgcagcggccgcggcagccactggaagtgccactgcgactagcgttggtggtgcggaaggtggtttggatgaggaagatgatgggttcggatgcgatattgggactattggtaacttcaagaaggctaagggaaccataaatatctcagcaacatacgagaccaggcaccatgactttgagacttcagttgttgcacgtggggacctttggaggttggagtcgtcgcgtggtggttcaaattctggcgatgaaaatgctccgcttttccttgttcagctgggacctttattatttgttcgtgactctacacttcttttgcctattcatctgtcaaagcagcaccttctttggtatggctatgatcgcaagaacaaaatgcactccttatgtccagctatctggtcaaaacatagaagatggatggtgatgtcaatgatgtgcctcaatcctgtaacctgttctttcatggatgtgcagttcccgaatggacagctaacatacgttgctggagaagggataacagcaagtggatttttcccattctttggtggtttgcttcaagctcatggaaaatgtcctggggaaacaagattaagcttctccttcaaggttagtgtctgcataataagccaactgtag
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| Protein seq | MEISFDAWVGVQRHGQDLADRLAQGFSGLLLHAHPPQLHWSAPALPAKLIPFEIDLPVVPFVVGGRRAGGGRGAADLPAAAVASFVEIGGRLGQAGSELGACVGGAVQQLARQILVPFLAESARGRKWEAIPPQPAAAAAAAATVNEGEVALAVERAEDKGLASERVGDRGPLEVAAAAAAAATGSATATSVGGAEGGLDEEDDGFGCDIGTIGNFKKAKGTINISATYETRHHDFETSVVARGDLWRLESSRGGSNSGDENAPLFLVQLGPLLFVRDSTLLLPIHLSKQHLLWYGYDRKNKMHSLCPAIWSKHRRWMVMSMMCLNPVTCSFMDVQFPNGQLTYVAGEGITASGFFPFFGGLLQAHGKCPGETRLSFSFKVSVCIISQL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 4.703007 | 0.211202 | 3.319553 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0530300 | RBH | 7.572769 | 6.149427 | 7.564250 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g45400 | RBH | 5.100883 | 4.628036 | 1.927053 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0530300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0024590 | RBH | 3.490045 | 14.344186 | 9.246797 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0024430 | RBH | 2.900249 | 4.169965 | 4.056342 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0024410 | RBH | 6.308285 | 15.350074 | 11.662900 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0024410 | RBH | 1.168715 | 0.241497 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0024430 | RBH | 39.896248 | 12.110672 | 11.089111 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0407500 | RBH | 34.789896 | 34.351974 | 38.6354465 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0024020 | RBH | 1.590896 | 0.820910 | 2.505433 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0419800 | RBH | 45.851349 | 32.676449 | 22.348787 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0024220 | RBH | 1.714447 | 0.104922 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0024100 | RBH | 4.429972 | 4.977921 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0024290 | RBH | 35.632584 | 18.175873 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0031720 | RBH | 7.662292 | 2.601075 | 2.521390 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0024340 | RBH | 3.178171 | 2.529558 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G023760 | RBH | 2.220721 | 0.410821 | 3.959103 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0024210 | RBH | 9.836914 | 31.330992 | 17.092379 |
