Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_05g0023890 | OGI:05070190 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr05:26916497-26920003 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gactgcactctcactgtcccaaaattttatagatgcatttacaaagttacaatactcattacatgcaaataactgaaggatggcgaatgtatttgtctggtatctacctgctctcctaactagcgtgccatctctcctagatggtaaccattggatcaggttatacttcttattgaccattgttctcatactatgctgtccaagctgccgttgccgtcgtcgatgcctttggtgtccgaaagctgcttccggcggctgccacccctgatcggcagaaacggcgcgccgtcgccgtcgtactccgccaccttcccgtccacggtgttctggagcgcctgctcgcacctcaccagaatctgcagaacgtccctcatcgtcggcctcgtcgccggctgcgcgccggtgcagatgatgccgagcttgaacacgacctcggcgtcgtcgccgtacccggcgtcggtgatgcacctgtccaccgcgtcggcgatgctcctgcccgattgcaggtgccgccacgcccactccgccagcgagccgtgctcgccgccgtcgtgggcttccctgccggtgatcagctcgaggagcaccaccccgaagctgtacacgtcgaccttctcgttcaccttcctcgtgtacgcgcactctgcacgagacgatcgtggtcagcacaaggtaagtcgctgtgctaagagaagaaatcaagggagaatcgtgagacgagcagcgaggttggttgaggtgaattaccgggagccatgtagccgaacgatccggcgacggcggtcatggtgtccggcgtcccggcctggaccagcatccgggcgagcccgaagtcggcgaccttggccatgagctcagcgtcgagcaggatgttgctggacttgatgtcccggtgcacgatcggcggcgagcactcgtggtgcatgtagcagaggcccctcgccgcgccgacggccaccctgaccctcgccagccagtccagcggcgctcgccggaccgacggcgccctcgctgtcgcgccaccggccagcaatttgttcccgtggagccacttgtcgaggctgccgttctccatgtactcgtacacgaggagcttcgtctccgcgcgggagaggcagcagaggagcttcacgatgttggtgtggcggacatggccgaggatgtccacctccgaatcgaactcgcgctccaggttcttgtccagcttgccgccggtccatatgcgcttcacggcgacggtgccgccggcgccgccgctgctccggctggcgtacgcgacgcggtacacgcgccccgcgccgcccttgccgatgaggttctcgtcggcgagcccgcgcacaagggaggcctcgctgaagtcgaggggctggaatggggtcatcttccatgccggctctgtccgcgcgagccgcttccgcctcttgatgtcgcggacgacgaagaaggcgagcgccccgatcaagacgacgagggccgcgccggcggcgaggagacccgaccggagacccggcgatacgccgtcggatgccttcgcggcgcacgagcgcaggcccgcgaagttacccgccggcgccgccgatacgcagagaccggggttgccgaggaagctctggtcgtaggcggagatggcgagcgcggccgggatctcgccggtgagctgatttgacgacaggttaagctggttaatcttcagcgatcccagcgacgtcggaataccgccggagagcttgttcgacgaaaggtcgagcagggtgagcaccggcatggagcccaatcccgccggaatatcgccggtgaactggttcctgctgaagttcatctgcgacaagccactgagcgacgcgatgctcgccgggatggccccggagagctgattccttgacaggtccagctcctgcagcaatggcatcccggcggcgaacccgtcaggtatctcgccggagaacaagttgttctcggcgttgaacttctggagcttggtggccgtcgccggaagccggccactgaaacggttgttgtggatgtaaagcctcgtcagattccaatacagcttctccggcaggcttccggtgaggtgtccattgttctgcaggagcacggtgatcagcctcgtctccgtccacagcgcagccggcacctcgccggaaagctcgttgtcctggagctggagactcagcagcgccgggcaagtggcaagactcgccggaattgagccgttcaaccggttgccggcggcggagatgatccacaaccggcggttgtcgcagaccccctccggtattggcccggtgaggtcgttgttgtcgacctcgatgtctctcagaaatggcgagtgcttcccgagctccgccggaatctgaccggtgagattgttctcgaacagcttcattatcaccagcgatggaagctgagcaaggctcgccggtatctcgccggagaagttgttcgtcatcaaggctaagttagttaggttcatcaaacttccaaagctctctgggatcgttccagtcagctggttctcagatatgtcgagataaattaagctcgctgctccaatcttgccattgacgacgacgtcgccggtgagctggttggtgtacaggaacaagtactgcagctttggaaggttccaaatcccaggaggtatgcttccggtgaatgaattctgggacaggtcgagatactccatctccatcatctctgtgacgtagctggggaaatcgccggtgaggttgcactgcgccagccagaccgtcttcaggctcgtcaagttcttgaacgatcccggcagctcgccgggggtgaactgattcacctcgagcttgagcgtctcgaggctagtgagctcgccgagcgccgccgggatcgtgccggtgagctggttgcagttgagggtaaacaccttcaggttcttgagcttcgacaccgccgccggtatcacgccggtgaagttgttgttgttcaaggcgaggtaggtcaggttcttgccgagccggtcaatgtcggcggggagctcgccgccgatactgttcatcgagaggtcgatggaggtgatcgcggtgaggttgtagaggaacgccgggaacacgccgccgacgctggtgttctggaggttgagcaccgtgagcgccgtcagcccgccgatggcgtcggggacggcgccggcgacggcgacgttggggagggacagcgacgtgacgcggccggtgccgccgccgtcgcaggacacgtacacccagcggcagtgcggcgccgcgtccgtccacgacgcgagcgccgcggggtccccccacgcgcgcttgacctggagcaggagctgcttctcgtcgacgccgccctgctgcgccgcgccgcgccgcgcgacgaggcttggcaggatcgcgagcaggaggaggtggaggtagtaggctttgccgctcgggaatgccatgtcttcgcgtggtttcttggtcgccgccggcgagcgcgtgcgttcactcggtgaggcaagcagccatcgcggactcc
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| CDS seq | atggcattcccgagcggcaaagcctactacctccacctcctcctgctcgcgatcctgccaagcctcgtcgcgcggcgcggcgcggcgcagcagggcggcgtcgacgagaagcagctcctgctccaggtcaagcgcgcgtggggggaccccgcggcgctcgcgtcgtggacggacgcggcgccgcactgccgctgggtgtacgtgtcctgcgacggcggcggcaccggccgcgtcacgtcgctgtccctccccaacgtcgccgtcgccggcgccgtccccgacgccatcggcgggctgacggcgctcacggtgctcaacctccagaacaccagcgtcggcggcgtgttcccggcgttcctctacaacctcaccgcgatcacctccatcgacctctcgatgaacagtatcggcggcgagctccccgccgacattgaccggctcggcaagaacctgacctacctcgccttgaacaacaacaacttcaccggcgtgataccggcggcggtgtcgaagctcaagaacctgaaggtgtttaccctcaactgcaaccagctcaccggcacgatcccggcggcgctcggcgagctcactagcctcgagacgctcaagctcgaggtgaatcagttcacccccggcgagctgccgggatcgttcaagaacttgacgagcctgaagacggtctggctggcgcagtgcaacctcaccggcgatttccccagctacgtcacagagatgatggagatggagtatctcgacctgtcccagaattcattcaccggaagcatacctcctgggatttggaaccttccaaagctgcagtacttgttcctgtacaccaaccagctcaccggcgacgtcgtcgtcaatggcaagattggagcagcgagcttaatttatctcgacatatctgagaaccagctgactggaacgatcccagagagctttggaagtttgatgaacctaactaacttagccttgatgacgaacaacttctccggcgagataccggcgagccttgctcagcttccatcgctggtgataatgaagctgttcgagaacaatctcaccggtcagattccggcggagctcgggaagcactcgccatttctgagagacatcgaggtcgacaacaacgacctcaccgggccaataccggagggggtctgcgacaaccgccggttgtggatcatctccgccgccggcaaccggttgaacggctcaattccggcgagtcttgccacttgcccggcgctgctgagtctccagctccaggacaacgagctttccggcgaggtgccggctgcgctgtggacggagacgaggctgatcaccgtgctcctgcagaacaatggacacctcaccggaagcctgccggagaagctgtattggaatctgacgaggctttacatccacaacaaccgtttcagtggccggcttccggcgacggccaccaagctccagaagttcaacgccgagaacaacttgttctccggcgagatacctgacgggttcgccgccgggatgccattgctgcaggagctggacctgcggaagcggctcgcgcggacagagccggcatggaagatgaccccattccagcccctcgacttcagcgaggcctcccttgtgcgcgggctcgccgacgagaacctcatcggcaagggcggcgcggggcgcgtgtaccgcgtcgcgtacgccagccggagcagcggcggcgccggcggcaccgtcgccgtgaagcgcatatggaccggcggcaagctggacaagaacctggagcgcgagttcgattcggaggtggacatcctcggccatgtccgccacaccaacatcgtgaagctcctctgctgcctctcccgcgcggagacgaagctcctcgtgtacgagtacatggagaacggcagcctcgacaagtggctccacgggaacaaattgctggccggtggcgcgacagcgagggcgccgtcggtccggcgagcgccgctggactggctggcgagggtcaggtgcgcgtacacgaggaaggtgaacgagaaggtcgacgtgtacagcttcggggtggtgctcctcgagctgatcaccggcagggaagcccacgacggcggcgagcacggctcgctggcggagtgggcgtggcggcacctgcaatcgggcaggagcatcgccgacgcggtggacaggtgcatcaccgacgccgggtacggcgacgacgccgaggtcgtgttcaagctcggcatcatctgcaccggcgcgcagccggcgacgaggccgacgatgagggacgttctgcagattctggtgaggtgcgagcaggcgctccagaacaccgtggacgggaaggtggcggagtacgacggcgacggcgcgccgtttctgccgatcaggggtggcagccgccggaagcagctttcggacaccaaaggcatcgacgacggcaacggcagcttggacagcatagtatga
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| Protein seq | MAFPSGKAYYLHLLLLAILPSLVARRGAAQQGGVDEKQLLLQVKRAWGDPAALASWTDAAPHCRWVYVSCDGGGTGRVTSLSLPNVAVAGAVPDAIGGLTALTVLNLQNTSVGGVFPAFLYNLTAITSIDLSMNSIGGELPADIDRLGKNLTYLALNNNNFTGVIPAAVSKLKNLKVFTLNCNQLTGTIPAALGELTSLETLKLEVNQFTPGELPGSFKNLTSLKTVWLAQCNLTGDFPSYVTEMMEMEYLDLSQNSFTGSIPPGIWNLPKLQYLFLYTNQLTGDVVVNGKIGAASLIYLDISENQLTGTIPESFGSLMNLTNLALMTNNFSGEIPASLAQLPSLVIMKLFENNLTGQIPAELGKHSPFLRDIEVDNNDLTGPIPEGVCDNRRLWIISAAGNRLNGSIPASLATCPALLSLQLQDNELSGEVPAALWTETRLITVLLQNNGHLTGSLPEKLYWNLTRLYIHNNRFSGRLPATATKLQKFNAENNLFSGEIPDGFAAGMPLLQELDLRKRLARTEPAWKMTPFQPLDFSEASLVRGLADENLIGKGGAGRVYRVAYASRSSGGAGGTVAVKRIWTGGKLDKNLEREFDSEVDILGHVRHTNIVKLLCCLSRAETKLLVYEYMENGSLDKWLHGNKLLAGGATARAPSVRRAPLDWLARVRCAYTRKVNEKVDVYSFGVVLLELITGREAHDGGEHGSLAEWAWRHLQSGRSIADAVDRCITDAGYGDDAEVVFKLGIICTGAQPATRPTMRDVLQILVRCEQALQNTVDGKVAEYDGDGAPFLPIRGGSRRKQLSDTKGIDDGNGSLDSIV |
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| Function | Receptor-like protein kinase HSL1 [UniProtKB/Swiss-Prot:Q9SGP2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_05g0023890 | OsLiXu_05g0023890.01 | Chr05 | 26916682 | 26920003 | - | NAM | ||
| CDS seq | atggcattcccgagcggcaaagcctactacctccacctcctcctgctcgcgatcctgccaagcctcgtcgcgcggcgcggcgcggcgcagcagggcggcgtcgacgagaagcagctcctgctccaggtcaagcgcgcgtggggggaccccgcggcgctcgcgtcgtggacggacgcggcgccgcactgccgctgggtgtacgtgtcctgcgacggcggcggcaccggccgcgtcacgtcgctgtccctccccaacgtcgccgtcgccggcgccgtccccgacgccatcggcgggctgacggcgctcacggtgctcaacctccagaacaccagcgtcggcggcgtgttcccggcgttcctctacaacctcaccgcgatcacctccatcgacctctcgatgaacagtatcggcggcgagctccccgccgacattgaccggctcggcaagaacctgacctacctcgccttgaacaacaacaacttcaccggcgtgataccggcggcggtgtcgaagctcaagaacctgaaggtgtttaccctcaactgcaaccagctcaccggcacgatcccggcggcgctcggcgagctcactagcctcgagacgctcaagctcgaggtgaatcagttcacccccggcgagctgccgggatcgttcaagaacttgacgagcctgaagacggtctggctggcgcagtgcaacctcaccggcgatttccccagctacgtcacagagatgatggagatggagtatctcgacctgtcccagaattcattcaccggaagcatacctcctgggatttggaaccttccaaagctgcagtacttgttcctgtacaccaaccagctcaccggcgacgtcgtcgtcaatggcaagattggagcagcgagcttaatttatctcgacatatctgagaaccagctgactggaacgatcccagagagctttggaagtttgatgaacctaactaacttagccttgatgacgaacaacttctccggcgagataccggcgagccttgctcagcttccatcgctggtgataatgaagctgttcgagaacaatctcaccggtcagattccggcggagctcgggaagcactcgccatttctgagagacatcgaggtcgacaacaacgacctcaccgggccaataccggagggggtctgcgacaaccgccggttgtggatcatctccgccgccggcaaccggttgaacggctcaattccggcgagtcttgccacttgcccggcgctgctgagtctccagctccaggacaacgagctttccggcgaggtgccggctgcgctgtggacggagacgaggctgatcaccgtgctcctgcagaacaatggacacctcaccggaagcctgccggagaagctgtattggaatctgacgaggctttacatccacaacaaccgtttcagtggccggcttccggcgacggccaccaagctccagaagttcaacgccgagaacaacttgttctccggcgagatacctgacgggttcgccgccgggatgccattgctgcaggagctggacctgcggaagcggctcgcgcggacagagccggcatggaagatgaccccattccagcccctcgacttcagcgaggcctcccttgtgcgcgggctcgccgacgagaacctcatcggcaagggcggcgcggggcgcgtgtaccgcgtcgcgtacgccagccggagcagcggcggcgccggcggcaccgtcgccgtgaagcgcatatggaccggcggcaagctggacaagaacctggagcgcgagttcgattcggaggtggacatcctcggccatgtccgccacaccaacatcgtgaagctcctctgctgcctctcccgcgcggagacgaagctcctcgtgtacgagtacatggagaacggcagcctcgacaagtggctccacgggaacaaattgctggccggtggcgcgacagcgagggcgccgtcggtccggcgagcgccgctggactggctggcgagggtcaggtgcgcgtacacgaggaaggtgaacgagaaggtcgacgtgtacagcttcggggtggtgctcctcgagctgatcaccggcagggaagcccacgacggcggcgagcacggctcgctggcggagtgggcgtggcggcacctgcaatcgggcaggagcatcgccgacgcggtggacaggtgcatcaccgacgccgggtacggcgacgacgccgaggtcgtgttcaagctcggcatcatctgcaccggcgcgcagccggcgacgaggccgacgatgagggacgttctgcagattctggtgaggtgcgagcaggcgctccagaacaccgtggacgggaaggtggcggagtacgacggcgacggcgcgccgtttctgccgatcaggggtggcagccgccggaagcagctttcggacaccaaaggcatcgacgacggcaacggcagcttggacagcatagtatga
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| Protein seq | MAFPSGKAYYLHLLLLAILPSLVARRGAAQQGGVDEKQLLLQVKRAWGDPAALASWTDAAPHCRWVYVSCDGGGTGRVTSLSLPNVAVAGAVPDAIGGLTALTVLNLQNTSVGGVFPAFLYNLTAITSIDLSMNSIGGELPADIDRLGKNLTYLALNNNNFTGVIPAAVSKLKNLKVFTLNCNQLTGTIPAALGELTSLETLKLEVNQFTPGELPGSFKNLTSLKTVWLAQCNLTGDFPSYVTEMMEMEYLDLSQNSFTGSIPPGIWNLPKLQYLFLYTNQLTGDVVVNGKIGAASLIYLDISENQLTGTIPESFGSLMNLTNLALMTNNFSGEIPASLAQLPSLVIMKLFENNLTGQIPAELGKHSPFLRDIEVDNNDLTGPIPEGVCDNRRLWIISAAGNRLNGSIPASLATCPALLSLQLQDNELSGEVPAALWTETRLITVLLQNNGHLTGSLPEKLYWNLTRLYIHNNRFSGRLPATATKLQKFNAENNLFSGEIPDGFAAGMPLLQELDLRKRLARTEPAWKMTPFQPLDFSEASLVRGLADENLIGKGGAGRVYRVAYASRSSGGAGGTVAVKRIWTGGKLDKNLEREFDSEVDILGHVRHTNIVKLLCCLSRAETKLLVYEYMENGSLDKWLHGNKLLAGGATARAPSVRRAPLDWLARVRCAYTRKVNEKVDVYSFGVVLLELITGREAHDGGEHGSLAEWAWRHLQSGRSIADAVDRCITDAGYGDDAEVVFKLGIICTGAQPATRPTMRDVLQILVRCEQALQNTVDGKVAEYDGDGAPFLPIRGGSRRKQLSDTKGIDDGNGSLDSIV
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_05g0023890 | OsLiXu_05g0023890.02 | Chr05 | 26916497 | 26920002 | - | IsoSeq | ||
| CDS seq | gtccgcgatggctgcttgcctcaccgagtgaacgcacgcgctcgccggcggcgaccaagaaaccacgcgaagacatggcattcccgagcggcaaagcctactacctccacctcctcctgctcgcgatcctgccaagcctcgtcgcgcggcgcggcgcggcgcagcagggcggcgtcgacgagaagcagctcctgctccaggtcaagcgcgcgtggggggaccccgcggcgctcgcgtcgtggacggacgcggcgccgcactgccgctgggtgtacgtgtcctgcgacggcggcggcaccggccgcgtcacgtcgctgtccctccccaacgtcgccgtcgccggcgccgtccccgacgccatcggcg
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| Protein seq | VRDGCLPHRVNARARRRRPRNHAKTWHSRAAKPTTSTSSCSRSCQASSRGAARRSRAASTRSSSCSRSSARGGTPRRSRRGRTRRRTAAGCTCPATAAAPAASRRCPSPTSPSPAPSPTPSA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.367846 | 0.431283 | 1.208652 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0522600 | RBH | 6.538717 | 3.326121 | 4.652346 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g44770 | RBH | 1.065398 | 1.662547 | 0.815341 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0522600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0024120 | RBH | 0.081726 | 14.293163 | 1.212829 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0024020 | RBH | 0.216965 | 2.422007 | 2.700588 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0023980 | RBH | 0.238012 | 1.263271 | 3.601509 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0023950 | RBH | 0.186972 | 0.275413 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0024040 | RBH | 2.369076 | 7.817878 | 8.193379 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0402600 | RBH | 3.843988 | 45.6817055 | 5.4424855 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0023610 | RBH | 0.000000 | 0.277550 | 0.555024 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0414400 | RBH | 6.446993 | 65.0569 | 3.811832 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0023780 | RBH | 0.000000 | 0.365868 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0023690 | RBH | 0.216572 | 4.856579 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0023860 | RBH | 0.000000 | 3.700044 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0032410 | RBH | 0.000000 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0023920 | RBH | 0.148200 | 4.579412 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G023340 | RBH | 0.091233 | 1.805656 | 1.193308 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0023720 | RBH | 0.263882 | 9.886345 | 1.551342 |
