Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_05g0019760 | OGI:05061480 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr05:23538530-23541708 | ||||||||
| Gene Symbol | CTHSP70-1, OsctHSP70-1, ctHSP70-1, OsMed37_6, Med37_6 | ||||||||||
| DNA seq | ctgattgctcttatagcgagatcaaagctgtcgaaggagagacccgtttggcccagagtcgagcattgcacagataaaaaaagaaagaacggagcaaaacagagttactcacaataattaactaagaatgcatcgccatatccaaaagctgttcagatgaaagttccaaaccacaggtaaaccacagcgttcctcccccacaactctcaatttctaccagaagcaacgacgatacgacagatcaagccacagccaaaagagacgatggcagaaagaacatcgtgagcggcaaccatggagcagtttagtcgacctcctcgatcttggggcctgcgccgctgccgcccgccggcgcgtcctcgtccatgcctccggccatgtcggcgccggggccctggtacatcttggcgatgatcgggttgcagatgccctccagctccttcatcttgtcctcgaactcgtcggcctcggcgagctggttggtgtcgagccagctgatggcgccatcgatggcgtcctcgatcctcttcttgtcgtcggcggcgagcttggaggcgatcttctcgtccttgatggtgttgcgcatgttgtaggcgtagttctcgagggcgttcttggcgtccaccttcttcttgtgctcctcgtcctcggccttgtacttctccgcctcctgcaccatcttctcgatctcctccttgctcagccgccccttgtcgttggtgatggtgatcttgttcttctgccccgtcgtcttgtcctccgcggacacgttcaggatgccgttggcgtcgatgtcgaagcagacgttgatctggggcacgccgcgcggcgccggtgggatgccggagagctcgaacttgccgaggaggttgttgtccttggtcctggcgcgctcgccctcgtacacctggatcaggacgccgggctggttgtcggagtaggtggagaagacctgctccttcttggtcgggatggtggtgttcctcgggatgagcacggtcatgacgccgccggcggtctcgaggccgagggacagcggggtgacgtcgagcaggagcaggtcctgcaccttctcgttgccctcgccgctcaggatggcggcctggacggcggcgccgtacgccacggcctcgtcggggttgatgctcttgcagagctccttgccgttgaagaagtcctggagcagctgctgcaccttggggatgcgggtggagccgccgacgagcacgacgtcgtgcacgctgctcttgtccatcttggcgtcgcggaggcacttctccacgggctccatgcacttgcggaacaggtccatgttgagctcctcgaaccgcgccctggtgatcgtcgtgtagaagtcgatgccctcgtacagcgagtcgatctcaatggtggtctgcgccgtcgacgacagcgtgcgcttggcgcgctcgcacgccgtcctgagccgccgcagcgcgcgcgggttgccgctgatgtccttcttgttcttgcgcttgaactcctgcacgaagtggttcaccatgcggttgtcgaagtcctcgccgccgaggtgggtgtcgccggcggtggccttgacctcgaagatgccctcctcgatggtgagcagcgacacatcgaacgtgccgccgccgaggtcaaagatgagcacgttcttctcgccgctgctcgtcgccttcttgtcgaggccgtacgcgatggcggcggcggtgggctcgttgatgatgcgcatcacgttgagcccggcgatgacgccggcgtccttggtggcctgcctctgcgagtcgttgaagtaggccgggacggtgaccacggcgttcttgatggacgagccgaggtaggcctccgcgatctccctcatcttgatcagcaccatggacgagatctcctccgcggcgaactgcttctcctcgcccttgtactggacgacgatcatcggcttgtcgccggggccaggcaccaccttgaacggccatagcttcatgtcactctgcacggacgggtcggagaacctcctaccaatcaaccgcttcgcatctgcgtttgagattgagaaaaatcgcaacaccagtgagttcgattgctccatcgattcagcagaaaatttcaaatcaacaaagcaaatacaatggtccaactgttcaactagcatttattatcaaaattccacacagcactacagcagtgagactcaaatcttcactaaatatataaaagcaaacataatctccaatgagttcgattggtccattgattcagcagaaaattccaaatctaatctactaaagtaaatccaagaagcaaacataatctccatctatttcagtggcattcatcaaaattctacacagcagtgagacccaaatcttcactaaataaaaagcacgatttcgatttggtcgagaaactgttcatatactattccagtggacctaacaacatgcctgtgcacaatgaaccaaagcaaaattgacatattaactcctttgggaattggcacgagcagtaagcaagtaaaattgatctgtaacatatgctcaacttttagctacgcgtgaacaaatcgcagaacctctcctaacacatctattcagaagaagaaaccacggagttgcagaactgattccatagctactccaacccatacagattacagaggacagaaacataattaccagaggacactagaacagggcatcatattctcatcgatctagtacactcttttacacatccaaaactaaaaaaccacggtgcagatcgcgttcacagtcacaaccggcgcaagcaaaagtggaagcagggagagggagggcgggaggatgcagggtaacgtaccgaagacggtgttggttgggttcatggcgacctggttcttggcggcgtcgccgatgagccgctcggtgtcggtgaaggcgacgtacgacggcgtggtccggttcccctggtcgttggcgatgatctccacgcggtcgtgctgccacacgcccacgcacgagtaggtcgtccccaggtcgatcccgatcgccggcccttcccccttcgccatctcctcctcctcctcccccctctccaaaaacctcgcggaatcgaaagcgaataatcgcaaacgcgcgctctcggattggattgcttgctgctgcgtgggaatttctctctctttctgatttctcgaacgagac
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| CDS seq | atggcgaagggggaagggccggcgatcgggatcgacctggggacgacctactcgtgcgtgggcgtgtggcagcacgaccgcgtggagatcatcgccaacgaccaggggaaccggaccacgccgtcgtacgtcgccttcaccgacaccgagcggctcatcggcgacgccgccaagaaccaggtcgccatgaacccaaccaacaccgtcttcggtacgttaccctgcatcctcccgccctccctctccctgcttccacttttgcttgcgccggttgtgactaggcaggccaccaaggacgccggcgtcatcgccgggctcaacgtgatgcgcatcatcaacgagcccaccgccgccgccatcgcgtacggcctcgacaagaaggcgacgagcagcggcgagaagaacgtgctcatctttgacctcggcggcggcacgttcgatgtgtcgctgctcaccatcgaggagggcatcttcgaggtcaaggccaccgccggcgacacccacctcggcggcgaggacttcgacaaccgcatggtgaaccacttcgtgcaggagttcaagcgcaagaacaagaaggacatcagcggcaacccgcgcgcgctgcggcggctcaggacggcgtgcgagcgcgccaagcgcacgctgtcgtcgacggcgcagaccaccattgagatcgactcgctgtacgagggcatcgacttctacacgacgatcaccagggcgcggttcgaggagctcaacatggacctgttccgcaagtgcatggagcccgtggagaagtgcctccgcgacgccaagatggacaagagcagcgtgcacgacgtcgtgctcgtcggcggctccacccgcatccccaaggtgcagcagctgctccaggacttcttcaacggcaaggagctctgcaagagcatcaaccccgacgaggccgtggcgtacggcgccgccgtccaggccgccatcctgagcggcgagggcaacgagaaggtgcaggacctgctcctgctcgacgtcaccccgctgtccctcggcctcgagaccgccggcggcgtcatgaccgtgctcatcccgaggaacaccaccatcccgaccaagaaggagcaggtcttctccacctactccgacaaccagcccggcgtcctgatccaggtgtacgagggcgagcgcgccaggaccaaggacaacaacctcctcggcaagttcgagctctccggcatcccaccggcgccgcgcggcgtgccccagatcaacgtctgcttcgacatcgacgccaacggcatcctgaacgtgtccgcggaggacaagacgacggggcagaagaacaagatcaccatcaccaacgacaaggggcggctgagcaaggaggagatcgagaagatggtgcaggaggcggagaagtacaaggccgaggacgaggagcacaagaagaaggtggacgccaagaacgccctcgagaactacgcctacaacatgcgcaacaccatcaaggacgagaagatcgcctccaagctcgccgccgacgacaagaagaggatcgaggacgccatcgatggcgccatcagctggctcgacaccaaccagctcgccgaggccgacgagttcgaggacaagatgaaggagctggagggcatctgcaacccgatcatcgccaagatgtaccagggccccggcgccgacatggccggaggcatggacgaggacgcgccggcgggcggcagcggcgcaggccccaagatcgaggaggtcgactaa
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| Protein seq | MAKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFGTLPCILPPSLSLLPLLLAPVVTRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSSGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELSGIPPAPRGVPQINVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKAEDEEHKKKVDAKNALENYAYNMRNTIKDEKIASKLAADDKKRIEDAIDGAISWLDTNQLAEADEFEDKMKELEGICNPIIAKMYQGPGADMAGGMDEDAPAGGSGAGPKIEEVD |
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| Function | Heat shock 70 kDa protein 4 [UniProtKB/Swiss-Prot:Q9LHA8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_05g0019760 | OsLiXu_05g0019760.01 | Chr05 | 23538530 | 23541708 | - | NAM | ||
| CDS seq | atggcgaagggggaagggccggcgatcgggatcgacctggggacgacctactcgtgcgtgggcgtgtggcagcacgaccgcgtggagatcatcgccaacgaccaggggaaccggaccacgccgtcgtacgtcgccttcaccgacaccgagcggctcatcggcgacgccgccaagaaccaggtcgccatgaacccaaccaacaccgtcttcggtacgttaccctgcatcctcccgccctccctctccctgcttccacttttgcttgcgccggttgtgactaggcaggccaccaaggacgccggcgtcatcgccgggctcaacgtgatgcgcatcatcaacgagcccaccgccgccgccatcgcgtacggcctcgacaagaaggcgacgagcagcggcgagaagaacgtgctcatctttgacctcggcggcggcacgttcgatgtgtcgctgctcaccatcgaggagggcatcttcgaggtcaaggccaccgccggcgacacccacctcggcggcgaggacttcgacaaccgcatggtgaaccacttcgtgcaggagttcaagcgcaagaacaagaaggacatcagcggcaacccgcgcgcgctgcggcggctcaggacggcgtgcgagcgcgccaagcgcacgctgtcgtcgacggcgcagaccaccattgagatcgactcgctgtacgagggcatcgacttctacacgacgatcaccagggcgcggttcgaggagctcaacatggacctgttccgcaagtgcatggagcccgtggagaagtgcctccgcgacgccaagatggacaagagcagcgtgcacgacgtcgtgctcgtcggcggctccacccgcatccccaaggtgcagcagctgctccaggacttcttcaacggcaaggagctctgcaagagcatcaaccccgacgaggccgtggcgtacggcgccgccgtccaggccgccatcctgagcggcgagggcaacgagaaggtgcaggacctgctcctgctcgacgtcaccccgctgtccctcggcctcgagaccgccggcggcgtcatgaccgtgctcatcccgaggaacaccaccatcccgaccaagaaggagcaggtcttctccacctactccgacaaccagcccggcgtcctgatccaggtgtacgagggcgagcgcgccaggaccaaggacaacaacctcctcggcaagttcgagctctccggcatcccaccggcgccgcgcggcgtgccccagatcaacgtctgcttcgacatcgacgccaacggcatcctgaacgtgtccgcggaggacaagacgacggggcagaagaacaagatcaccatcaccaacgacaaggggcggctgagcaaggaggagatcgagaagatggtgcaggaggcggagaagtacaaggccgaggacgaggagcacaagaagaaggtggacgccaagaacgccctcgagaactacgcctacaacatgcgcaacaccatcaaggacgagaagatcgcctccaagctcgccgccgacgacaagaagaggatcgaggacgccatcgatggcgccatcagctggctcgacaccaaccagctcgccgaggccgacgagttcgaggacaagatgaaggagctggagggcatctgcaacccgatcatcgccaagatgtaccagggccccggcgccgacatggccggaggcatggacgaggacgcgccggcgggcggcagcggcgcaggccccaagatcgaggaggtcgactaa
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| Protein seq | MAKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFGTLPCILPPSLSLLPLLLAPVVTRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSSGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELSGIPPAPRGVPQINVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKAEDEEHKKKVDAKNALENYAYNMRNTIKDEKIASKLAADDKKRIEDAIDGAISWLDTNQLAEADEFEDKMKELEGICNPIIAKMYQGPGADMAGGMDEDAPAGGSGAGPKIEEVD
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_05g0019760 | OsLiXu_05g0019760.02 | Chr05 | 23538621 | 23541707 | - | IsoSeq | ||
| CDS seq | tcgttcgagaaatcagaaagagagagaaattcccacgcagcagcaagcaatccaatccgagagcgcgcgtttgcgattattcgctttcgattccgcgaggtttttggagaggggggaggaggaggaggagatggcgaagggggaagggccggcgatcgggatcgacctggggacgacctactcgtgcgtgggcgtgtggcagcacgaccgcgtggagatcatcgccaacgaccaggggaaccggaccacgccgtcgtacgtcgccttcaccgacaccgagcggctcatcggcgacgccgccaagaaccaggtcgccatgaacccaaccaacaccgtcttcgatgcgaagcggttgat
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| Protein seq | SFEKSERERNSHAAASNPIRERAFAIIRFRFREVFGEGGGGGGDGEGGRAGDRDRPGDDLLVRGRVAARPRGDHRQRPGEPDHAVVRRLHRHRAAHRRRRQEPGRHEPNQHRLRCEAVD |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.161265 | 0.313290 | 4.854394 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0460000 | RBH | 1.799666 | 1.908458 | 28.984789 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g38530 | RBH | 1.151785 | 1.249968 | 7.065669 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0460000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0019830 | RBH | 0.251102 | 2.170489 | 14.915505 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0019770 | RBH | 0.804681 | 4.342240 | 5.325600 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0019650 | RBH | 0.000000 | 2.934127 | 13.941472 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0019660 | RBH | 0.155740 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0019790 | RBH | 19.592918 | 18.973106 | 27.323486 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0349600 | RBH | 1.6976345 | 0.6739025 | 45.7803595 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0019380 | RBH | 0.077368 | 0.070043 | 4.028326 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0360100 | RBH | 31.517792 | 2.998962 | 1.8786985 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0019620 | RBH | 0.602592 | 0.211263 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0019600 | RBH | 1.276387 | 11.932081 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0019660 | RBH | 9.328740 | 62.144299 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0038880 | RBH | 0.532512 | 0.515305 | 11.081713 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0019770 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G019250 | RBH | 0.205077 | 0.0 | 4.435781 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0019610 | RBH | 0.519055 | 0.000000 | 21.993328 |
