Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_05g0019690 | OGI:05061380 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr05:23489080-23496172 | ||||||||
| Gene Symbol | DLN143, OsDLN143 | ||||||||||
| DNA seq | ctacaaattaggttgggtagcatccaactttgtcgtatgcgcaaagttcatggttaaagtttccaatccaatcatatgctcatccagtttcttcccttgaatgcttgaaacaccactactggcattagcacaatcagaattcccgcaggcagatttcattgtagtatcacaaatgctcatttcatcagatgaaaaatccagatgattttgaacagttttcaggacagccaatctttttgaccttagtcgatatggaggggaaacatcaagactcccttgctcatccataggacccaaggacaaaagtgctgcagttttgaatgactgtgggctatctgtagtacactttcctatgggagtgtggaagtcatcactgcttaatctgccaatcttcaaatcattatcttcagcaggcgtcggtttatctctttttcttcttcttagtattgagggagtaccatggaatttttcagcagcacttctcaatatggattcaacactaagctgatctgatccttttccatgagtgggtggagtagtatagccattgggtgagtgcattacgttcctagagtgttccggtacataatttgctgtaaacactggggattgggcaggagcaatgtcttccatcttaggtatctgataacaaagagaaccaacagagtgagcctcactctgcaaggatgatccgccgccattaatggctgcttcaccttctctcttagcttgtcttgaacagcccattttatctgatatctgattaattttaagtcccttgtcaccaagaaaattgattccctgaaccttcccacaaacaaaattgttcccagtacccttgtcatgaacagaatccattctcattccctgtgttgctagatcaaaagcagaatcatcagctgcagaagcctcacatgaagttactggctgaccaagtgagaggtaatctgcacagcccttaaagtctttcaaattggatgcccgttgatgagaggtagggtcagaatgaactactcctaagcggtctcttgaacagataattggctctttgtttaagtcaaaatggttgtcagcaggtggccgctttggtaactgtttcaaaccatcaccaacaactggtggatgaactggcagaatatctctggtattgtagtcatctattttttttcttaatgaactgttccaatggTtttttatagaattgtctgtcctggagataagaacaaacaagcatcagtgtgagctgaatatttagaagcctaactgttcgattagtaaagaaaggtcaattgctgtatgaacttaagacatgaaaatagcatagaatgcagaagcacatttacaggaaacaatatgtacgtaaaaaaacaaagtactttcaatttcaacagcaatagccctagtgcacatcatctgtttggaacagcaaagcagcaaaagtcacaaaatcccatcaccagattagattTAtatatatgtcacaaataactcatttattcaacaatttaatttattaatacacaagccaagacgttacagctgctaagacaagagcaagcacaaagaatccataaaacgttgccacgagcagtgccgttagtgcatttctgtgtctaatttacatgagtaaacaaaaacactttacataataatgctgcggattagtaccttccaggaagaagtttagcaatttctgcccatttattcccatacatacaatgagcacgggcaagcacacgctcctcttcaacagtccaagcttctttccttatttgtgggtccaaatgattatgccacctaaattatatgggtacatcagaagtgaacactgattcatacggtatgtactttattatggcaaatttataaataaacaagaaatatgtaagaaaccttactacaattttataatcccgatatgttattagttctgaactaatattgaaaatttagctggatggccaactgaccatttaaactgtcctattttaggaagcatggatatgtcgattaaaatttaacatgtagagaactctgttattactaaggctaggcaaaattactcatgtaaaaaatgtcatcctgcttaaattttagcaaggcacaagaatgttcaaattccaaggacaccaacagttgatggtgtatggtcttagtgtcccttcacttcttacctcatgtagaccgtctagcccatagggtaaactaaacatatagtgctgtttcacatatattaaacacagaaggcatcaaagggcaaattcacaatcaagcagaacaggtgtattgtgtgagattgccaagagatttgccaactgaaagcatgaagttgtacagaagtgctgtaccaaatgtggaaccagaagttgtatagtgactaggagctggaagtatattgtcgatcatgtctagcctcagtataggcattgtggtggtcaaggattagtttgtgtaaaaacaattcttggtaggacgccaaaacttggggcgttcctgcttacAaaataaaaaccaccagcctccaaagtggtgattcagaagtaccattatatctgggcctaaattagatgataacctcaataggtgtcatccagtttcaataaccccaaaagtatgatcaaagaatctgactagttttttttcacaatttacctcatcaaggaaaatcaaaaattgctaactagtctacaaaatgtgaatgcgacatttcacttgtagtagttgattgcaatttacaacatgcatggtaatgttctcaaaacaaatacctctctcggcattgtttaccaattcgaccatttagtgaccttgctataacagaccatttttttggtccatgcttctttaccatattgatgatgacatcatcttcctgcaaaagaattcaatgaacaagcagaatatacagatttgaatttatggaaaaataaataagatatttgacaaacctcttgggtccatggaccttttataagttcaggatcaagaactttctgccatctatgcagacattgtacttctgtcctatcagagaaagattcggctgcacacatacacagtaaataaacaaatactgtacagttttcacaaaagaacatgaaactgacactaagttgctaaatttcattgttatgaattactgcccagtagtttcttaaaagtgcaaatgccataaccccgccccataaacataattcacatgtttttttttcaaatagatcaaataatttgatgtgctggtacttgacaaatatgttttgaattttttttaattgctaaaattaacattatgcaattaactgatagaagtatagaaaccacttataagttattcaaataatttacgcaaggaaaagatgagaaccacactggtgggctttgaacattattagactatatcattgccgcactggtctagctccaggcacaaagaattgtaaaaaccattgaaatagtatttgtgtgtgtcattggagggtatttgtacgataactctaacttatgggtgcaaaataaatgaaaatttgatgctggaggcaaattggacaaaaaaacaggtggctcatatattttatgtatttgttttccctctttgaaactgttaattgaatattatgcgcaggatgcagacaagaaaagagaagcaaacctatcttcttccagtttttgccattataaatatcaactgccttccgcaatttttcatcctgcacccaagtgacaagaactaggtaaacaaacattcattttgaaatggatgccgtccaacccaaaggaaaagatccacacataacaatatagaaaggtaatggtaagtttcatatgcaaaaggtaaacggaatgcaagataacactgcagatagagggaacagtgaacaggtaggaaatatagtagaaaatagctaacctcttctggtgtccagccacccttagctctccttaccgggccactttttcgcctaatatgtaagattccatcagcaccacaaatataagataaaaatactatcaatagctcatgtaattatggaaaacttgactaggatccagtacagtacataaaatacaggctgtccgattgaaagacacaagccaggttagaggaagatgacaaaatcagtaaattctagcaatccagatttctcatgtgccctcaggcaaggatgtggaaatgccgcccgtttcagaaaaggcgattaacatcaagaaacaaaagatctagctgattttcctgatcccattttaggcaggatatgtgtaatcatacatgttagaaatccaattaattaaaagaagtaaaaaaaaattaccaatccatctggaaaagaccaagtgcttctggttactgcccaatgctcatccccccagaaaccactagctggcaagttatttgggaaaaacaaactagctggctagtttccctttttccccagtaccagtttcatttttttttcttaagcctcaagaatgattactgtactttactgttattaaacctgtagcttcttacagcttactgatacagtcactcccttttagggaattaatatgataagtactgccagcttaaaaaatgttttgtgagtaaaaaatagacagtcaaaggaaataagcatagccataaaaaataacacagctctgttactacttactaccatcagactgtaaagcccctattagaccgtgttactacttactacatgatccaacactcgtatgggatacttttccacgggatatgattgccgtctaaagcccttcatcacactaatttcttcctccaccacatcgctcgctcgctcactcactctggttttttaagcagaacagcaagctggagagaaaggaagcggatggagcagtgagcggaagctaagcagtggataggtcgctgtgtaagggaacaggcaatccacaagggcactccatgtgcgttggaggcttgagaagcaaaatgtgatgccctggtcaaagataagcagagacacgtagatcatgctgccaattgccttgggcatggcagtttgccaatagtttcgagcaagccccaattcagcttcatggtctacatgcttgaaacatggctggttttgcatttctttcattagcaatttgcactggcaatttttagttggaatctgcaaaactttgaaaaatctctggaaacatgagacttgctgaaacacttttgaaactcaattaagcacttattagacttatggaaacactccgggacttgcttacttgctggaatttcttacgaaggttgtcaaacctgtcaacatgttattaaacttgggtttgaaacttggcgtttcattttttaaaactatctaaacatggtgttttagtttttgaagctcccagaaactgcaaggaagtatttgaatgcttggaacatgtcgaactttcctatcctgttgcatcggcgtcttttttttttttgcagcaagtagcatccttataaaaattcataaaataactcaaatggaatatctcatggatgaacctttgtctcctacatagtcatcttgatgggtcaactcatattccagtacatgaaaaatccaataatatagcattacgcatcattcagaaactgcaaatcagctattacaggctccaaaagacatgactcaactataaaatcggtataactatttatctaaaaatggcatagtttcatggcattagtggagatttcctgaaacattataaataacacaacaacttataaaaaactgatttctgcattcagaagcatcagcttctttttTAaaaaaaaaaactatccacatactgaatatatgtccaatgcaaaagcaaatgtcgaaataaaaaatggcattttagataaacagggtgcctgaaatatgatgcactaactaataacacaccgcagatatgctaaacagtatagtgcatacttgcggtttaaatgatcaaaacacacacctgaaaacaaacagacgataaactttactcattttagcaatcactgcaaagcgacttcaccgtgcctcaaccaagaaagcatgccaatttccaaaacaacagaactagatacaattacccagtgaactagagtactaaaagaacaaagcaagcaaaacccttcccaccattgaagtgttaaaagtgtgatggaacaaaaattcattcaacgaagactacagctgtaaagaccagcagcaacggcaagatacatgttaaaaggtcaaccaacagtcctgtccaaacagccgtcatgctgcacaaggaccacgtcaccaatcagaaataaatccaaaggccacagatttctcaagatcgccaaagctgctgcgatcgcaatccaacccagcccagcccagccgcatctgcgaacgagacgaagcataaaaaccccatctttcccaggcaaagcacaagcagcgacccccccgtccggagttccggaccatagccccaagcaagcgggggcatccgaacgaggcaaacaaacaaccacccactactacccaacagccaacagcacagcgacggtaagttgagccgcggcgcgggggcggggggatcactacctgcgaccgaagatggaatccgccgcggtgggcgacgccagcgcggcggcgtgcgcgctcccctccgagaccgaagggctcgacgccaccggattccgctcctcctcctcctcctcctccaccttcaccgccggcatcgcgcccattgatctaccgcctcatcaacacctccgccgcctaaacaaacaatcaaaaaaaaaacaaaacaaaattcccatcagaaacactcccccaacttaaacgcacctcgcggaagaagggaatcaagcgccgccgcttaccaaagccgccgccgcccagatcggggggaagcggaggatcgaatcgaggaagcgggtggggtgggggaaggagagatggggtggcacgaaaccctaggcagggcaaagggagcgagctcctctcctcctcctgcgagcgcggctgcccgtctgggggtggtgttgcggcgcggcggcttcgattgtgtgttggggaaggaggaggaggaggaggggtttcaaaaaacctcgcccgttgaaggaagggaa
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| CDS seq | atgggcgcgatgccggcggtgaaggtggaggaggaggaggaggaggagcggaatccggtggcgtcgagcccttcggtctcggaggggagcgcgcacgccgccgcgctggcgtcgcccaccgcggcggattccatcttcggtcgcaggcgaaaaagtggcccggtaaggagagctaagggtggctggacaccagaagaggatgaaaaattgcggaaggcagttgatatttataatggcaaaaactggaagaagatagtatttgtttatttactgtgtatgtgtgcagccgaatctttctctgataggacagaagtacaatgtctgcatagatggcagaaagttcttgatcctgaacttataaaaggtccatggacccaagaggaagatgatgtcatcatcaatatggtaaagaagcatggaccaaaaaaatggtctgttatagcaaggtcactaaatggtcgaattggtaaacaatgccgagagaggtggcataatcatttggacccacaaataaggaaagaagcttggactgttgaagaggagcgtgtgcttgcccgtgctcattgtatgtatgggaataaatgggcagaaattgctaaacttcttcctggaaggacagacaattctataaaaaAccattggaacagttcattaagaaaaaaaatagatgactacaataccagagatattctgccagttcatccaccagttgttggtgatggtttgaaacagttaccaaagcggccacctgctgacaaccattttgacttaaacaaagagccaattatctgttcaagagaccgcttaggagtagttcattctgaccctacctctcatcaacgggcatccaatttgaaagactttaagggctgtgcagattacctctcacttggtcagccagtaacttcatgtgaggcttctgcagctgatgattctgcttttgatctagcaacacagggaatgagaatggattctgttcatgacaagggtactgggaacaattttgtttgtgggaaggttcagggaatcaattttcttggtgacaagggacttaaaattaatcagatatcagataaaatgggctgttcaagacaagctaagagagaaggtgaagcagccattaatggcggcggatcatccttgcagagtgaggctcactctgttggttctctttgttatcagatacctaagatggaagacattgctcctgcccaatccccagtgtttacagcaaattatgtaccggaacactctaggaacgtaatgcactcacccaatggctatactactccacccactcatggaaaaggatcagatcagcttagtgttgaatccatattgagaagtgctgctgaaaaattccatggtactccctcaatactaagaagaagaaaaagagataaaccgacgcctgctgaagataatgatttgaagattggcagattaagcagtgatgacttccacactcccataggaaagtgtactacagatagcccacagtcattcaaaactgcagcacttttgtccttgggtcctatggatgagcaagggagtcttgatgtttcccctccatatcgactaaggtcaaaaagattggctgtcctgaaaactgttcaaaatcatctggatttttcatctgatgaaatgagcatttgtgatactacaatgaaatctgcctgcgggaattctgattgtgctaatgccagtagtggtgtttcaagcattcaagggaagaaactggatgagcatatgattggattggaaactttaaccatgaactttgcgcatacgacaaagttggatgctacccaacctaatttgtag
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| Protein seq | MGAMPAVKVEEEEEEERNPVASSPSVSEGSAHAAALASPTAADSIFGRRRKSGPVRRAKGGWTPEEDEKLRKAVDIYNGKNWKKIVFVYLLCMCAAESFSDRTEVQCLHRWQKVLDPELIKGPWTQEEDDVIINMVKKHGPKKWSVIARSLNGRIGKQCRERWHNHLDPQIRKEAWTVEEERVLARAHCMYGNKWAEIAKLLPGRTDNSIKNHWNSSLRKKIDDYNTRDILPVHPPVVGDGLKQLPKRPPADNHFDLNKEPIICSRDRLGVVHSDPTSHQRASNLKDFKGCADYLSLGQPVTSCEASAADDSAFDLATQGMRMDSVHDKGTGNNFVCGKVQGINFLGDKGLKINQISDKMGCSRQAKREGEAAINGGGSSLQSEAHSVGSLCYQIPKMEDIAPAQSPVFTANYVPEHSRNVMHSPNGYTTPPTHGKGSDQLSVESILRSAAEKFHGTPSILRRRKRDKPTPAEDNDLKIGRLSSDDFHTPIGKCTTDSPQSFKTAALLSLGPMDEQGSLDVSPPYRLRSKRLAVLKTVQNHLDFSSDEMSICDTTMKSACGNSDCANASSGVSSIQGKKLDEHMIGLETLTMNFAHTTKLDATQPNL |
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| Function | Transcription factor MYB3R-2 [UniProtKB/Swiss-Prot:Q0JHU7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_05g0019690 | OsLiXu_05g0019690.01 | Chr05 | 23489080 | 23496172 | - | NAM | ||
| CDS seq | atgggcgcgatgccggcggtgaaggtggaggaggaggaggaggaggagcggaatccggtggcgtcgagcccttcggtctcggaggggagcgcgcacgccgccgcgctggcgtcgcccaccgcggcggattccatcttcggtcgcaggcgaaaaagtggcccggtaaggagagctaagggtggctggacaccagaagaggatgaaaaattgcggaaggcagttgatatttataatggcaaaaactggaagaagatagtatttgtttatttactgtgtatgtgtgcagccgaatctttctctgataggacagaagtacaatgtctgcatagatggcagaaagttcttgatcctgaacttataaaaggtccatggacccaagaggaagatgatgtcatcatcaatatggtaaagaagcatggaccaaaaaaatggtctgttatagcaaggtcactaaatggtcgaattggtaaacaatgccgagagaggtggcataatcatttggacccacaaataaggaaagaagcttggactgttgaagaggagcgtgtgcttgcccgtgctcattgtatgtatgggaataaatgggcagaaattgctaaacttcttcctggaaggacagacaattctataaaaaAccattggaacagttcattaagaaaaaaaatagatgactacaataccagagatattctgccagttcatccaccagttgttggtgatggtttgaaacagttaccaaagcggccacctgctgacaaccattttgacttaaacaaagagccaattatctgttcaagagaccgcttaggagtagttcattctgaccctacctctcatcaacgggcatccaatttgaaagactttaagggctgtgcagattacctctcacttggtcagccagtaacttcatgtgaggcttctgcagctgatgattctgcttttgatctagcaacacagggaatgagaatggattctgttcatgacaagggtactgggaacaattttgtttgtgggaaggttcagggaatcaattttcttggtgacaagggacttaaaattaatcagatatcagataaaatgggctgttcaagacaagctaagagagaaggtgaagcagccattaatggcggcggatcatccttgcagagtgaggctcactctgttggttctctttgttatcagatacctaagatggaagacattgctcctgcccaatccccagtgtttacagcaaattatgtaccggaacactctaggaacgtaatgcactcacccaatggctatactactccacccactcatggaaaaggatcagatcagcttagtgttgaatccatattgagaagtgctgctgaaaaattccatggtactccctcaatactaagaagaagaaaaagagataaaccgacgcctgctgaagataatgatttgaagattggcagattaagcagtgatgacttccacactcccataggaaagtgtactacagatagcccacagtcattcaaaactgcagcacttttgtccttgggtcctatggatgagcaagggagtcttgatgtttcccctccatatcgactaaggtcaaaaagattggctgtcctgaaaactgttcaaaatcatctggatttttcatctgatgaaatgagcatttgtgatactacaatgaaatctgcctgcgggaattctgattgtgctaatgccagtagtggtgtttcaagcattcaagggaagaaactggatgagcatatgattggattggaaactttaaccatgaactttgcgcatacgacaaagttggatgctacccaacctaatttgtag
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| Protein seq | MGAMPAVKVEEEEEEERNPVASSPSVSEGSAHAAALASPTAADSIFGRRRKSGPVRRAKGGWTPEEDEKLRKAVDIYNGKNWKKIVFVYLLCMCAAESFSDRTEVQCLHRWQKVLDPELIKGPWTQEEDDVIINMVKKHGPKKWSVIARSLNGRIGKQCRERWHNHLDPQIRKEAWTVEEERVLARAHCMYGNKWAEIAKLLPGRTDNSIKNHWNSSLRKKIDDYNTRDILPVHPPVVGDGLKQLPKRPPADNHFDLNKEPIICSRDRLGVVHSDPTSHQRASNLKDFKGCADYLSLGQPVTSCEASAADDSAFDLATQGMRMDSVHDKGTGNNFVCGKVQGINFLGDKGLKINQISDKMGCSRQAKREGEAAINGGGSSLQSEAHSVGSLCYQIPKMEDIAPAQSPVFTANYVPEHSRNVMHSPNGYTTPPTHGKGSDQLSVESILRSAAEKFHGTPSILRRRKRDKPTPAEDNDLKIGRLSSDDFHTPIGKCTTDSPQSFKTAALLSLGPMDEQGSLDVSPPYRLRSKRLAVLKTVQNHLDFSSDEMSICDTTMKSACGNSDCANASSGVSSIQGKKLDEHMIGLETLTMNFAHTTKLDATQPNL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.226927 | 0.164123 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0459000 | RBH | 0.505264 | 0.000000 | 2.283497 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g38460 | RBH | 0.332734 | 0.000000 | 0.572416 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0459000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0019760 | RBH | 0.090551 | 2.374190 | 1.453799 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0019700 | RBH | 0.000000 | 0.331189 | 0.149551 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0019580 | RBH | 0.000000 | 3.184461 | 1.958660 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0019590 | RBH | 0.000000 | 0.098311 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0019720 | RBH | 0.0 | 3.276977 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0348900 | RBH | 0.946921 | 2.5419985 | 4.8876515 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0019310 | RBH | 0.0 | 0.228525 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0359300 | RBH | 1.2735325 | 1.5619375 | 8.800303 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0019550 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0019530 | RBH | 0.0 | 2.156861 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0019590 | RBH | 0.0 | 5.992200 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0038990 | RBH | 0.824231 | 0.809746 | 1.113000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0019700 | RBH | 0.0 | 2.297989 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G019180 | RBH | 0.074270 | 0.634097 | 0.924233 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0019540 | RBH | 0.0 | 0.000000 | 0.747182 |
