Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_05g0018670 | OGI:05058350 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr05:22467502-22469323 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gaaaataacctgcttatttttccccctctcatttcatatatgtgattgccaatttgtcatcaatcgtttgccagatttgcataaaccgtacaatccgaatcagcgaaatctatatcctcctcgtcgtctgcaaggtgagaggccaagatgtccaaaacgccagcaaggcctccaagttcagagctcagaccctctccggcgacgaactccctcaccacgttgcccacctcgatcaggctgcaccccggcgtcttcctcatgctcctgctccgtatcgccttcctcgtgctcgccacgtcgctccaccgcctcgccgcggcgtacacgttggccagcatgacgaggttgcccacgtcgtccggctccagctcgaccagcctctcggcggccagcacggccgtgtcgacgtcgccgtggctccggcacgcgctgagcaacgagccccagaccttcgcgtcggcgggcaccggcatgtcgcgcaccaagtccagcgcgcgccggatttgtcccgaccggccaaggaggtcgacgacgcagccgtagtgctcgacgccgggctcgacgccgtagacgtcgttcatccggtcgaagtggctcagcccttcgtcgacgagccccgcgtaggagcaggctgacaagagcccgacgaaggtgatgacattaggcctcacctttccttccttctccatctcggtgaacagccagacggcctcgtgcgctctcccgtgcgccgcgaggccgccgatcaccgtgctccacgagatgacgtccttgtcggccatgccgtcgaacagctgcagcgcttggtcgatgcacccgcacttggcgtacatctccattagcgcattgcagatgtgtgtacttgtcagcatgccgtgccttttgcagtaggcgtatatccatctgcctagctccagagctcccagctgggcacatgccggcaacaccgcgacgatgctcacgtcgtccggctcgaagccttctgtttgcatcgacctgaacgcgtcgacggcgcccgggtagtccccgaccgtcgtgtacccagaaaccatcgccgtccatgtaacaattgtcttgtcaggcatggagttgaacaatgctgttgctttcctcatctggcccagccgcgcgtgtgccgatataagcatgttccaggaaaccacgtccctttcccgcatttcatcgaacaccttgtgcgcgagcgccaggtcgccggctcgcgtgtacatctcgatcagggagttctgaacgatggcactggagtcgcacccggatctcaccacgtgcgtgtgcacctgctttcccagctcaagcgccgccgttccgccacaggccttgagcaggaacgggtacgtgaaccggtcgccgccggcgtgaccatccggaggggacgtggggcacctgagcatgcggatgtagaccgcgacggcgtcgcggtgctggtggttctgggcgtacgccttgatcatggcgttgtggaggtggaggtttgggtcgcgcacctgggcgaacacccgcgcggcgtgggtgacgcggcggtgggcgttgcagaggtggacgatctgggtggcgaggtagctgctttgcgagatgcggagccgcacgacgtgcccgtggacgcggaggaggtcccggaacgtcacgcaggcgcggagcctcgccatgaccgcgtcctccagctgccgaggcgcgctggaagacggcggcggcggcatggtgttagcagacaaggtgttcgatgaattggctgtgtggtacgttcggcaagcggttggtgtgcttccgcgggaggtcagagacttgaccgtcttaacatcaaact
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| CDS seq | atgccgccgccgccgtcttccagcgcgcctcggcagctggaggacgcggtcatggcgaggctccgcgcctgcgtgacgttccgggacctcctccgcgtccacgggcacgtcgtgcggctccgcatctcgcaaagcagctacctcgccacccagatcgtccacctctgcaacgcccaccgccgcgtcacccacgccgcgcgggtgttcgcccaggtgcgcgacccaaacctccacctccacaacgccatgatcaaggcgtacgcccagaaccaccagcaccgcgacgccgtcgcggtctacatccgcatgctcaggtgccccacgtcccctccggatggtcacgccggcggcgaccggttcacgtacccgttcctgctcaaggcctgtggcggaacggcggcgcttgagctgggaaagcaggtgcacacgcacgtggtgagatccgggtgcgactccagtgccatcgttcagaactccctgatcgagatgtacacgcgagccggcgacctggcgctcgcgcacaaggtgttcgatgaaatgcgggaaagggacgtggtttcctggaacatgcttatatcggcacacgcgcggctgggccagatgaggaaagcaacagcattgttcaactccatgcctgacaagacaattgttacatggacggcgatggtttctgggtacacgacggtcggggactacccgggcgccgtcgacgcgttcaggtcgatgcaaacagaaggcttcgagccggacgacgtgagcatcgtcgcggtgttgccggcatgtgcccagctgggagctctggagctaggcagatggatatacgcctactgcaaaaggcacggcatgctgacaagtacacacatctgcaatgcgctaatggagatgtacgccaagtgcgggtgcatcgaccaagcgctgcagctgttcgacggcatggccgacaaggacgtcatctcgtggagcacggtgatcggcggcctcgcggcgcacgggagagcgcacgaggccgtctggctgttcaccgagatggagaaggaaggaaaggtgaggcctaatgtcatcaccttcgtcgggctcttgtcagcctgctcctacgcggggctcgtcgacgaagggctgagccacttcgaccggatgaacgacgtctacggcgtcgagcccggcgtcgagcactacggctgcgtcgtcgacctccttggccggtcgggacaaatccggcgcgcgctggacttggtgcgcgacatgccggtgcccgccgacgcgaaggtctggggctcgttgctcagcgcgtgccggagccacggcgacgtcgacacggccgtgctggccgccgagaggctggtcgagctggagccggacgacgtgggcaacctcgtcatgctggccaacgtgtacgccgcggcgaggcggtggagcgacgtggcgagcacgaggaaggcgatacggagcaggagcatgaggaagacgccggggtgcagcctgatcgaggtgggcaacgtggtgagggagttcgtcgccggagagggtctgagctctgaacttggaggccttgctggcgttttggacatcttggcctctcaccttgcagacgacgaggaggatatagatttcgctgattcggattgtacggtttatgcaaatctggcaaacgattga
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| Protein seq | MPPPPSSSAPRQLEDAVMARLRACVTFRDLLRVHGHVVRLRISQSSYLATQIVHLCNAHRRVTHAARVFAQVRDPNLHLHNAMIKAYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKACGGTAALELGKQVHTHVVRSGCDSSAIVQNSLIEMYTRAGDLALAHKVFDEMRERDVVSWNMLISAHARLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCKRHGMLTSTHICNALMEMYAKCGCIDQALQLFDGMADKDVISWSTVIGGLAAHGRAHEAVWLFTEMEKEGKVRPNVITFVGLLSACSYAGLVDEGLSHFDRMNDVYGVEPGVEHYGCVVDLLGRSGQIRRALDLVRDMPVPADAKVWGSLLSACRSHGDVDTAVLAAERLVELEPDDVGNLVMLANVYAAARRWSDVASTRKAIRSRSMRKTPGCSLIEVGNVVREFVAGEGLSSELGGLAGVLDILASHLADDEEDIDFADSDCTVYANLAND |
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| Function | Pentatricopeptide repeat-containing protein At2g20540 [UniProtKB/Swiss-Prot:Q9SIL5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_05g0018670 | OsLiXu_05g0018670.01 | Chr05 | 22467502 | 22469323 | - | NAM | ||
| CDS seq | atgccgccgccgccgtcttccagcgcgcctcggcagctggaggacgcggtcatggcgaggctccgcgcctgcgtgacgttccgggacctcctccgcgtccacgggcacgtcgtgcggctccgcatctcgcaaagcagctacctcgccacccagatcgtccacctctgcaacgcccaccgccgcgtcacccacgccgcgcgggtgttcgcccaggtgcgcgacccaaacctccacctccacaacgccatgatcaaggcgtacgcccagaaccaccagcaccgcgacgccgtcgcggtctacatccgcatgctcaggtgccccacgtcccctccggatggtcacgccggcggcgaccggttcacgtacccgttcctgctcaaggcctgtggcggaacggcggcgcttgagctgggaaagcaggtgcacacgcacgtggtgagatccgggtgcgactccagtgccatcgttcagaactccctgatcgagatgtacacgcgagccggcgacctggcgctcgcgcacaaggtgttcgatgaaatgcgggaaagggacgtggtttcctggaacatgcttatatcggcacacgcgcggctgggccagatgaggaaagcaacagcattgttcaactccatgcctgacaagacaattgttacatggacggcgatggtttctgggtacacgacggtcggggactacccgggcgccgtcgacgcgttcaggtcgatgcaaacagaaggcttcgagccggacgacgtgagcatcgtcgcggtgttgccggcatgtgcccagctgggagctctggagctaggcagatggatatacgcctactgcaaaaggcacggcatgctgacaagtacacacatctgcaatgcgctaatggagatgtacgccaagtgcgggtgcatcgaccaagcgctgcagctgttcgacggcatggccgacaaggacgtcatctcgtggagcacggtgatcggcggcctcgcggcgcacgggagagcgcacgaggccgtctggctgttcaccgagatggagaaggaaggaaaggtgaggcctaatgtcatcaccttcgtcgggctcttgtcagcctgctcctacgcggggctcgtcgacgaagggctgagccacttcgaccggatgaacgacgtctacggcgtcgagcccggcgtcgagcactacggctgcgtcgtcgacctccttggccggtcgggacaaatccggcgcgcgctggacttggtgcgcgacatgccggtgcccgccgacgcgaaggtctggggctcgttgctcagcgcgtgccggagccacggcgacgtcgacacggccgtgctggccgccgagaggctggtcgagctggagccggacgacgtgggcaacctcgtcatgctggccaacgtgtacgccgcggcgaggcggtggagcgacgtggcgagcacgaggaaggcgatacggagcaggagcatgaggaagacgccggggtgcagcctgatcgaggtgggcaacgtggtgagggagttcgtcgccggagagggtctgagctctgaacttggaggccttgctggcgttttggacatcttggcctctcaccttgcagacgacgaggaggatatagatttcgctgattcggattgtacggtttatgcaaatctggcaaacgattga
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| Protein seq | MPPPPSSSAPRQLEDAVMARLRACVTFRDLLRVHGHVVRLRISQSSYLATQIVHLCNAHRRVTHAARVFAQVRDPNLHLHNAMIKAYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKACGGTAALELGKQVHTHVVRSGCDSSAIVQNSLIEMYTRAGDLALAHKVFDEMRERDVVSWNMLISAHARLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCKRHGMLTSTHICNALMEMYAKCGCIDQALQLFDGMADKDVISWSTVIGGLAAHGRAHEAVWLFTEMEKEGKVRPNVITFVGLLSACSYAGLVDEGLSHFDRMNDVYGVEPGVEHYGCVVDLLGRSGQIRRALDLVRDMPVPADAKVWGSLLSACRSHGDVDTAVLAAERLVELEPDDVGNLVMLANVYAAARRWSDVASTRKAIRSRSMRKTPGCSLIEVGNVVREFVAGEGLSSELGGLAGVLDILASHLADDEEDIDFADSDCTVYANLAND
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0439300 | RBH | 0.191001 | 0.0 | 0.026056 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g36350 | RBH | 0.130752 | 0.0 | 0.006696 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0439300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0018660 | RBH | 0.103577 | 0.786893 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0018610 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0018470 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0018500 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0018720 | RBH | 0.334838 | 0.000000 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0331700 | RBH | 0.4670815 | 1.2177935 | 0.1560755 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0018240 | RBH | 0.053104 | 0.088034 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0342900 | RBH | 0.5850795 | 1.847384 | 1.8043815 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0018540 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0018480 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0018600 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0037100 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0018660 | RBH | 0.0 | 0.750991 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G018170 | RBH | 0.062116 | 0.244080 | 0.388865 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0018470 | RBH | 0.260838 | 0.0 | 0.323811 |
