Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_05g0018630 | OGI:05058180 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr05:22436000-22436760 | ||||||||
| Gene Symbol | CENH3, CENH3, CenH3 | ||||||||||
| DNA seq | aataaacttgctatgagatcagagacttcagactaataaacatttctgattagtaccgcagatagtgcgacctgttcagaaccattttactaagaacaaaaattagagacacggataacaacattttccattgctgatgataatgagatggtaacatcagacggtgcataacacaagaacaccactacgataaggaacacaggttaaaataaaactggtaacacctgatctaactctacaactccagatctggcaacggaggcattctacgccctctcgccacggatgcggcgggcgagctggatgtccttgggcatgatggtgacgcgcttggcgtggatggcgcagaggttggtgtcctcgaagagcccgacgaggtaggcctcagcggcctcctgcagcgcggcgacggcggagctctggaagcggaggtcggtcttgaagtcctgcgcgatctcccgcaccagccgctggaacggcagcttgcggatgagcagctccgtgctcttctggtacttgcggatctcccggagcgcgacggttcccggcctgaagcggtggggcttcttcacgccgccggtcgccggggccgacttgcgcgccgccttcgtcgccagctgcttcctcggcgccttgccgccggtggacttcctcgccgtctgcttcgtgcgggccatttgggaactggactggctgctgctgcttggaatcggaagcgcgagagcttggaggatttgggaattgggggattggagtgaggt
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| CDS seq | atggcccgcacgaagcagacggcgaggaagtccaccggcggcaaggcgccgaggaagcagctggcgacgaaggcggcgcgcaagtcggccccggcgaccggcggcgtgaagaagccccaccgcttcaggccgggaaccgtcgcgctccgggagatccgcaagtaccagaagagcacggagctgctcatccgcaagctgccgttccagcggctggtgcgggagatcgcgcaggacttcaagaccgacctccgcttccagagctccgccgtcgccgcgctgcaggaggccgctgaggcctacctcgtcgggctcttcgaggacaccaacctctgcgccatccacgccaagcgcgtcaccatcatgcccaaggacatccagctcgcccgccgcatccgtggcgagagggcgtag
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| Protein seq | MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
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| Function | Histone H3.2 [UniProtKB/Swiss-Prot:Q76MV0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_05g0018630 | OsLiXu_05g0018630.01 | Chr05 | 22436000 | 22436760 | - | NAM | ||
| CDS seq | atggcccgcacgaagcagacggcgaggaagtccaccggcggcaaggcgccgaggaagcagctggcgacgaaggcggcgcgcaagtcggccccggcgaccggcggcgtgaagaagccccaccgcttcaggccgggaaccgtcgcgctccgggagatccgcaagtaccagaagagcacggagctgctcatccgcaagctgccgttccagcggctggtgcgggagatcgcgcaggacttcaagaccgacctccgcttccagagctccgccgtcgccgcgctgcaggaggccgctgaggcctacctcgtcgggctcttcgaggacaccaacctctgcgccatccacgccaagcgcgtcaccatcatgcccaaggacatccagctcgcccgccgcatccgtggcgagagggcgtag
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| Protein seq | MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 5.710001 | 0.756273 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0489800 | SBH | 0.0 | 0.0 | 3.614323 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g36280 | RBH | 0.0 | 0.0 | 1.894834 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0489800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0018610 | RBH | 0.0 | 40.865429 | 1.666775 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0018560 | RBH | 0.0 | 11.291152 | 1.960153 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0018420 | RBH | 0.0 | 29.257671 | 2.607229 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0018450 | RBH | 0.0 | 3.010364 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0018680 | RBH | 0.0 | 45.359756 | 4.089548 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0330700 | RBH | 25.8260725 | 11.7333695 | 20.083681 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0018200 | RBH | 0.0 | 4.108660 | 0.320685 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0341900 | RBH | 33.4574105 | 0.9922495 | 120.923275 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0018500 | RBH | 0.0 | 1.434388 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0018440 | RBH | 0.0 | 76.639458 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0018560 | RBH | 0.0 | 80.244148 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0040610 | RBH | 0.0 | 4.335617 | 0.281086 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0018620 | RBH | 0.0 | 35.589569 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G018130 | RBH | 0.0 | 16.398020 | 5.599330 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0018420 | RBH | 0.0 | 77.436607 | 4.122286 |
