Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_05g0017690 | OGI:05055940 | 15/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr05:21635406-21637732 | ||||||||
| Gene Symbol | SPARK4, OsSPARK4 | ||||||||||
| DNA seq | ggtgaacagtcagtttgtattatctagttatcttggcaaggatcagtaaaattcacaagtagcagccaactctgataataattccatctgtttcatcgcttggaatgaattgtatgggaaaaaaaaaatcaatgcaaatcaagagataacgaaacatatgattctggagttcaattgaccagaatttgcaagagcactacatccatatcggctattgttcttatctagtaggctgtatgattcttgaattcgccaagaaaaagatcacctcctcctacatcacctgagcatgtcgccattgtcgatgaacgggccactgaacgccggcgaggcgctgaagttgctcccggcctcgctgaacatggcgctgtgcccgtacggcagcggccggtccggcagctccgggatgtccatgtccccctccagcatcttcaccgcctcggtgatggtcggccggagcgccaccatgacgtgagcgcacaggatcccaacgagcacgaacctctccatggcgccgccccgggggctgtccgccgtcgacagcgcgccgtcgagcacctccctcgcctgcccggccttgacgtgcgcccacgcccagtcggtgatcagcacggggcccgacggcgccgacatgtccaggacgcgccgcgcgctcagcacctcgagcaccagcacgccgaagctgtacacgtcgctcttctccgtcagctgcccgtacagcgcgtactccggcgccaggtagccgtgcgtgccggcgactcgcgtcgtgaggtgggactgcccctcccggctccgcctcgccagcccgaagtccgccacccgcgcgcgcatgtcgccgtcgagcaggatgttggtcgccttgatgtccctgtggtagatcgccggcttcacgccgtagtgcaggtactccagccccttcgccacgtccatgattatgctccgccgctgcgcccatgtcagcgccggccgcttgccgtcccggaagatgaagtcctcgagcgcgccgttgggcatgaagtcgtagacgaggaacttctgcttcccttcctcggcgtcgtcgtcgacgatgcagcagccgcggagcggcaccaggttgcggtggcggaggtggctgatgatctccacctcgttggtgaactcctcgtcgccgccctccacgtccgggtcgagcatcttcttcaccgcgaccacggacccgtccgcgagcacgccgcggtagacggcgccgaacccgccgcggccgacgaggttgcggtcggcgaaggcgtccgtcgccttggagagctcggcaatgtcgtacaggatggagcccgtgttcggccgcggatgcgaccgccgctccgccgatccctccttggagatctcgtggatcttcttcttcttgtcatgcctcctccagaccaagaacgcgaggagcgaggcgagcaggaggaatgcgacggggatggcggtggcgtagatgaccgtgtcgtgggatttgggcggcgcggcgggaggggtggagagggcgaggccgagggtgcaggcggcggtaggtgggttggtggggccggcgacgttggagatgccggcggcgtacgtgacggtgaggtagaagcagttgcgcgtcgtcgcggcgccgtcggtggtggcgttggcggagatgttggcggcggctttgaggcgggaggtggcggcgatgcccgcgtcgaggcagcggaggcagtgcggcgtcgaggagaggtcgccgcacgcggagtccagcgcggccacggagtcgttcccgacgaccgccctgtactccgcggcggtggtgacgccggcgcagaaggacggcgaggagacgaactgctccggcgaagggaagcaggtctgcacgagggacgctcccgggagggagagcggcgccgccgacagcttcgccccgtagtccttgaggcaggccgcggactcccccaccgacgggatgcggaagtggcccgtggcgcggacctgttccgcgaggccgatggcgagcacggacagcagcgtattgcagcacctcgtcatgttccccgccccgccggcgcacaggtcggcgtcccacgggaacgtcgtcacgtagctcagatcgagcgggcacgtcgcgttcccacccccgcccgccccatccaccccctccatcgagcgggcgagcagcagcagcagcgccatggctaccgccctgagcagcagcaggctcggcatttccgcgaacagttgctgcgcgcggaagacgagtggtggagcagagcagcttagctaatagctaggcagggggtgggtggtgtggtggtggtgggcagtagtaaaatgcggcggctatagat
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| CDS seq | atgccgagcctgctgctgctcagggcggtagccatggcgctgctgctgctgctcgcccgctcgatggagggggtggatggggcgggcgggggtgggaacgcgacgtgcccgctcgatctgagctacgtgacgacgttcccgtgggacgccgacctgtgcgccggcggggcggggaacatgacgaggtgctgcaatacgctgctgtccgtgctcgccatcggcctcgcggaacaggtccgcgccacgggccacttccgcatcccgtcggtgggggagtccgcggcctgcctcaaggactacggggcgaagctgtcggcggcgccgctctccctcccgggagcgtccctcgtgcagacctgcttcccttcgccggagcagttcgtctcctcgccgtccttctgcgccggcgtcaccaccgccgcggagtacagggcggtcgtcgggaacgactccgtggccgcgctggactccgcgtgcggcgacctctcctcgacgccgcactgcctccgctgcctcgacgcgggcatcgccgccacctcccgcctcaaagccgccgccaacatctccgccaacgccaccaccgacggcgccgcgacgacgcgcaactgcttctacctcaccgtcacgtacgccgccggcatctccaacgtcgccggccccaccaacccacctaccgccgcctgcaccctcggcctcgccctctccacccctcccgccgcgccgcccaaatcccacgacacggtcatctacgccaccgccatccccgtcgcattcctcctgctcgcctcgctcctcgcgttcttggtctggaggaggcatgacaagaagaagaagatccacgagatctccaaggagggatcggcggagcggcggtcgcatccgcggccgaacacgggctccatcctgtacgacattgccgagctctccaaggcgacggacgccttcgccgaccgcaacctcgtcggccgcggcgggttcggcgccgtctaccgcggcgtgctcgcggacgggtccgtggtcgcggtgaagaagatgctcgacccggacgtggagggcggcgacgaggagttcaccaacgaggtggagatcatcagccacctccgccaccgcaacctggtgccgctccgcggctgctgcatcgtcgacgacgacgccgaggaagggaagcagaagttcctcgtctacgacttcatgcccaacggcgcgctcgaggacttcatcttccgggacggcaagcggccggcgctgacatgggcgcagcggcggagcataatcatggacgtggcgaaggggctggagtacctgcactacggcgtgaagccggcgatctaccacagggacatcaaggcgaccaacatcctgctcgacggcgacatgcgcgcgcgggtggcggacttcgggctggcgaggcggagccgggaggggcagtcccacctcacgacgcgagtcgccggcacgcacggctacctggcgccggagtacgcgctgtacgggcagctgacggagaagagcgacgtgtacagcttcggcgtgctggtgctcgaggtgctgagcgcgcggcgcgtcctggacatgtcggcgccgtcgggccccgtgctgatcaccgactgggcgtgggcgcacgtcaaggccgggcaggcgagggaggtgctcgacggcgcgctgtcgacggcggacagcccccggggcggcgccatggagaggttcgtgctcgttgggatcctgtgcgctcacgtcatggtggcgctccggccgaccatcaccgaggcggtgaagatgctggagggggacatggacatcccggagctgccggaccggccgctgccgtacgggcacagcgccatgttcagcgaggccgggagcaacttcagcgcctcgccggcgttcagtggcccgttcatcgacaatggcgacatgctcaggtga
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| Protein seq | MPSLLLLRAVAMALLLLLARSMEGVDGAGGGGNATCPLDLSYVTTFPWDADLCAGGAGNMTRCCNTLLSVLAIGLAEQVRATGHFRIPSVGESAACLKDYGAKLSAAPLSLPGASLVQTCFPSPEQFVSSPSFCAGVTTAAEYRAVVGNDSVAALDSACGDLSSTPHCLRCLDAGIAATSRLKAAANISANATTDGAATTRNCFYLTVTYAAGISNVAGPTNPPTAACTLGLALSTPPAAPPKSHDTVIYATAIPVAFLLLASLLAFLVWRRHDKKKKIHEISKEGSAERRSHPRPNTGSILYDIAELSKATDAFADRNLVGRGGFGAVYRGVLADGSVVAVKKMLDPDVEGGDEEFTNEVEIISHLRHRNLVPLRGCCIVDDDAEEGKQKFLVYDFMPNGALEDFIFRDGKRPALTWAQRRSIIMDVAKGLEYLHYGVKPAIYHRDIKATNILLDGDMRARVADFGLARRSREGQSHLTTRVAGTHGYLAPEYALYGQLTEKSDVYSFGVLVLEVLSARRVLDMSAPSGPVLITDWAWAHVKAGQAREVLDGALSTADSPRGGAMERFVLVGILCAHVMVALRPTITEAVKMLEGDMDIPELPDRPLPYGHSAMFSEAGSNFSASPAFSGPFIDNGDMLR |
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| Function | Probable receptor-like protein kinase At1g11050 [UniProtKB/Swiss-Prot:O04086] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_05g0017690 | OsLiXu_05g0017690.01 | Chr05 | 21635406 | 21637732 | - | NAM | ||
| CDS seq | atgccgagcctgctgctgctcagggcggtagccatggcgctgctgctgctgctcgcccgctcgatggagggggtggatggggcgggcgggggtgggaacgcgacgtgcccgctcgatctgagctacgtgacgacgttcccgtgggacgccgacctgtgcgccggcggggcggggaacatgacgaggtgctgcaatacgctgctgtccgtgctcgccatcggcctcgcggaacaggtccgcgccacgggccacttccgcatcccgtcggtgggggagtccgcggcctgcctcaaggactacggggcgaagctgtcggcggcgccgctctccctcccgggagcgtccctcgtgcagacctgcttcccttcgccggagcagttcgtctcctcgccgtccttctgcgccggcgtcaccaccgccgcggagtacagggcggtcgtcgggaacgactccgtggccgcgctggactccgcgtgcggcgacctctcctcgacgccgcactgcctccgctgcctcgacgcgggcatcgccgccacctcccgcctcaaagccgccgccaacatctccgccaacgccaccaccgacggcgccgcgacgacgcgcaactgcttctacctcaccgtcacgtacgccgccggcatctccaacgtcgccggccccaccaacccacctaccgccgcctgcaccctcggcctcgccctctccacccctcccgccgcgccgcccaaatcccacgacacggtcatctacgccaccgccatccccgtcgcattcctcctgctcgcctcgctcctcgcgttcttggtctggaggaggcatgacaagaagaagaagatccacgagatctccaaggagggatcggcggagcggcggtcgcatccgcggccgaacacgggctccatcctgtacgacattgccgagctctccaaggcgacggacgccttcgccgaccgcaacctcgtcggccgcggcgggttcggcgccgtctaccgcggcgtgctcgcggacgggtccgtggtcgcggtgaagaagatgctcgacccggacgtggagggcggcgacgaggagttcaccaacgaggtggagatcatcagccacctccgccaccgcaacctggtgccgctccgcggctgctgcatcgtcgacgacgacgccgaggaagggaagcagaagttcctcgtctacgacttcatgcccaacggcgcgctcgaggacttcatcttccgggacggcaagcggccggcgctgacatgggcgcagcggcggagcataatcatggacgtggcgaaggggctggagtacctgcactacggcgtgaagccggcgatctaccacagggacatcaaggcgaccaacatcctgctcgacggcgacatgcgcgcgcgggtggcggacttcgggctggcgaggcggagccgggaggggcagtcccacctcacgacgcgagtcgccggcacgcacggctacctggcgccggagtacgcgctgtacgggcagctgacggagaagagcgacgtgtacagcttcggcgtgctggtgctcgaggtgctgagcgcgcggcgcgtcctggacatgtcggcgccgtcgggccccgtgctgatcaccgactgggcgtgggcgcacgtcaaggccgggcaggcgagggaggtgctcgacggcgcgctgtcgacggcggacagcccccggggcggcgccatggagaggttcgtgctcgttgggatcctgtgcgctcacgtcatggtggcgctccggccgaccatcaccgaggcggtgaagatgctggagggggacatggacatcccggagctgccggaccggccgctgccgtacgggcacagcgccatgttcagcgaggccgggagcaacttcagcgcctcgccggcgttcagtggcccgttcatcgacaatggcgacatgctcaggtga
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| Protein seq | MPSLLLLRAVAMALLLLLARSMEGVDGAGGGGNATCPLDLSYVTTFPWDADLCAGGAGNMTRCCNTLLSVLAIGLAEQVRATGHFRIPSVGESAACLKDYGAKLSAAPLSLPGASLVQTCFPSPEQFVSSPSFCAGVTTAAEYRAVVGNDSVAALDSACGDLSSTPHCLRCLDAGIAATSRLKAAANISANATTDGAATTRNCFYLTVTYAAGISNVAGPTNPPTAACTLGLALSTPPAAPPKSHDTVIYATAIPVAFLLLASLLAFLVWRRHDKKKKIHEISKEGSAERRSHPRPNTGSILYDIAELSKATDAFADRNLVGRGGFGAVYRGVLADGSVVAVKKMLDPDVEGGDEEFTNEVEIISHLRHRNLVPLRGCCIVDDDAEEGKQKFLVYDFMPNGALEDFIFRDGKRPALTWAQRRSIIMDVAKGLEYLHYGVKPAIYHRDIKATNILLDGDMRARVADFGLARRSREGQSHLTTRVAGTHGYLAPEYALYGQLTEKSDVYSFGVLVLEVLSARRVLDMSAPSGPVLITDWAWAHVKAGQAREVLDGALSTADSPRGGAMERFVLVGILCAHVMVALRPTITEAVKMLEGDMDIPELPDRPLPYGHSAMFSEAGSNFSASPAFSGPFIDNGDMLR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.236324 | 0.923311 | 0.395719 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0423500 | RBH | 0.677175 | 0.926075 | 0.811557 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g34950 | RBH | 0.669508 | 0.496728 | 0.112946 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0423500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0017730 | RBH | 0.043563 | 5.307815 | 0.652255 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0017730 | RBH | 0.047770 | 1.414337 | 0.542337 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0017550 | RBH | 0.204738 | 2.964416 | 1.531572 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0017570 | RBH | 0.0 | 0.315056 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0017810 | RBH | 0.0 | 7.218892 | 2.318206 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0328200 | SBH | 7.7316425 | 2.051381 | 3.741922 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0017290 | RBH | 0.100473 | 0.255356 | 0.062295 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0328400 | RBH | 1.8811115 | 12.236508 | 2.912464 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0017630 | RBH | 0.091642 | 0.020473 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0017540 | RBH | 0.000000 | 1.431152 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0017680 | RBH | 0.0 | 7.666981 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0041740 | RBH | 0.000000 | 0.0 | 0.124978 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0017740 | RBH | 0.122672 | 2.077702 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G017220 | RBH | 0.076555 | 1.685395 | 0.173263 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0017520 | RBH | 0.408639 | 1.693882 | 0.340804 |
