Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_05g0016560 | OGI:05053340 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr05:20579896-20584140 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttagctcctgaagtattataaatactagtagacaagatatagatcaaataaaaaattagtagattgtgtttcacgtatatgctttagaatccaaaacgaaaagaaaaaagagaacatgttgattatagaaaaattaggaggaacctagaattagagtcttatgggcaaggacactattgttgatttactaacctctataagaaacacggacatgaataaaaaaggaactattcgggtagtatctacaaatattaccgaaaacattgttaaaatacttctacgagagggttttattgaaagtgttcggaaacatcaggaaagtaatagatatttcttggtttcaactttgcgacatcaaaagagaaagactagaaagggaatatatagaactagaacctttttaaagcgtatcagccgacctggcttatgaatttatgccaactatcaaggaattcctaaggttttggccggaatgggaattgctattctttctacttctcgaggtataatgacagatcgagaagctcgactaaacagaattggaggagaagtcttatgttatatatggtaatcgccccacctatagttatagtacccaaattctatcttgaacttcctatttttcaaacaaaaatacaacattttttatttgaaaataaaaaaagaaaaataggagaaaaaaatatgacagaaaagaaaaataggagagaaaaaaaaaccccgagagaagcaaaaattactttcgagggtttagttatggaagccctacccaacggaatgttccgcgttcgcctagagaatgacaccatcatcctgggctatatttcaggaaagatccggtctagttctatgcgaatactgatgggggatagagtcaaaattgaagtaagtcgttatgattcaagcaaggggcgtataatttatagacttccccataaggattcgaagcgtaccaaagactcgaaggataccgaagatttgaaggataccaaagatttaaagggttaggtttttctttttttttttcagggtaaaaaattcaaagttctaaaattcaaacaaagagacttattttttccaaaagTTTAAGAAAGGAATACTCCCTATACATTTGTCGACAAATTTTCTTTTTGACAAATTTTCTTttttgacagatgtaattataatacaaccgtagtgtagttatactgtaactcatatgtaattacactgtaacttgcatgtaactacagtgtaacttatatgtaagtttcacgtaattttgaatcgttagatctattataagatttgttctggtgaggaagaaaaaaaaatcacatcatacacatatgtgaaagaatttgttctcacaacctccattttaccgaaataaatgttatggagagatttttgaaagttacatacatgttacattataattacagtgtaattacatgcaagttacagtgtaattacactacgattgtactataattacatctgtcaaatttttggtggaaaatttgtcgacaaatatatagcaaattcagttgcgaattgtagccccaagaacgaagcagatgcaattggcaaccgtttcatgccagcgcgcagacatatatgatctactgggaaaccataacaggttgagagatgcccagttcctagtcaacactaatgttgacaatttaaggtacatctacatagcaagcttctttacactccatggatgtacacgaaactaaatctaggaaaaattcatcgcatgtagcgtgccctccaaaattcacttaggcaaaatttgcagttcaaatgctccttcgttcaggaaattgttcactctgaccgttgcagccatccaagctgtgtagaaatgaatcttgttaaacatttgacaacaaaactggctgaatattgaaggagcagacaacatttgacatgaggaaataccttccaagcatacatcacaaagaatgcaaccgtatctgctgaccagacaacagcgaaggatttcacgaagaacgggataatgacgttgattagagggaccagtagaaacaagtagttgagagcctctttctccttacttgagcagtcacgggcccgaagagaaggtatagctgcagaagtaggtagttgatcagttacagcatcacagaaaatgtatctaattcattgcatccattgaatcttattaacctcaacagcgacacagcatctagagatcaaattatgttcattttatcgacagcctcagattaataattaatattgagagacagattcactgttaattactacttgatatgacaacctcaaggatttttgttaaaggttggcaaagagaaggatatttcatcatgtttttccagtcagcatatatgcatatatagaacagctaaacagacaccgtgctagaaagaaaataaattctcagttgctcttagaactattctttatctagaactggatgaactgcactataaagtttatggctagtgaagcacgaattaaccccttgtgccagttgattcaaaatgttgtagcacaagagcactttcaatacatttttagccattgctgcttacgaaaaaagagcaagggcttggttgatgcatggatagatcataacccttgctgctgatgggaacaatttacaaacgtataaacttactgcacaacgacaagtaccacaaatcaaattcttacttactgaacatccagatggaccacattcccatcagcctccaaatgtccggctcattcgacgggaacacgagattgaaggaaagggctccacccaacagcatggaggcatatccctggacctcaaagatagtgtacagagctgttccaggcactgcagggttctttgtggcagtggacgcccttggtgcaaacgttgctgcggtcttctgaactgcctgctcaagaacacagcatagttatttggtggtgacctcatgaagtcatgttgtttgctgtatcagcaaaaatctttagcatttctaccctttaaaataacattttgagtttctttgtgcatatgggcctacgaccaaaaactagatgtatgctaagagcaggtacaataccaggctataagccagctatacacatattttaaagagataaaagaggagagataagagtagcaggctacagatttgtagccagttacaatacggactccaagatacatatgtatatgacaggtgggactaaacattaatgatgtagtacatataggtaactattgtatgaattggctattaaattgactatatataatttggagccgatagttggctatactattaaacttgctctaaagttaaatcacctattagaagactacaacatttctgatggctcaaattagtttcttcctgcaattcattgtactaggtttctatcgaattgtgaagttttcaagtgtttcgaattcttacagttgcctagtattatttgcaacaacttatgaattatatcgaacaagctgaatgggaaactgttttaaacactcgggtggacgtccacccgtttcttgcatgtcatctaaatggttatgaaaaattttcAaaaaaattgacatgataggttaatatgtaatatatcatctcacaaacatgcaagttcaagttcaacttctataagttgtaataaaaataacaaatttgactgtgaatatatgtatacttgttagagtttaatttgttatttttgttacaacttgtagaagtcgaatttggacttgcatgtttgtgagatgatatattacatattaacctatcttataattttttttggaattttttcataatcatttaggtggtatgcaagaaacgggtggacgtccacccgagagattagagaccatctcctgagctgaatgcttagttcttagaccaagggacaaagaaaagagccgaccttcttgagctccttctcaatcttgggatcaacaggagccggcttcttctccgccgacgactcagcggaagaacctccgccactggccacctccccttctttgctctctcccacagcggaagcctcggccgccactgcaccagcggcggcaccaccaccgtccgagccatccgagctcgcccacgcaagaaccagcctcgccggcctcctcctcctcctccccgcgaatatcccgccggggacggtggccggcgggaacgcggagctggccgcggccgcgaacgcgcagccgctgccgagagggctgtacattgttcgcgcgaggttattctt
More
|
||||||||||
| CDS seq | aagaataacctcgcgcgaacaatgtacagccctctcggcagcggctgcgcgttcgcggccgcggccagctccgcgttcccgccggccaccgtccccggcgggatattcgcggggaggaggaggaggaggccggcgaggctggttcttgcgtgggcgagctcggatggctcggacggtggtggtgccgccgctggtgcagtggcggccgaggcttccgctgtgggagagagcaaagaaggggaggtggccagtggcggaggttcttccgctgagtcgtcggcggagaagaagccggctcctgttgatcccaagattgagaaggagctcaagaaggcagttcagaagaccgcagcaacgtttgcaccaagggcgtccactgccacaaagaaccctgcagtgcctggaacagctctgtacactatctttgaggtccagggatatgcctccatgctgttgggtggagccctttccttcaatctcgtgttcccgtcgaatgagccggacatttggaggctgatgggaatgtggtccatctggatgttcactataccttctcttcgggcccgtgactgctcaagtaaggagaaagaggctctcaactacttgtttctactggtccctctaatcaacgtcattatcccgttcttcgtgaaatccttcgctgttgtctggtcagcagatacggttgcattctttgtgatgtatgcttggaagcttggatggctgcaacggtca
More
|
||||||||||
| Protein seq | KNNLARTMYSPLGSGCAFAAAASSAFPPATVPGGIFAGRRRRRPARLVLAWASSDGSDGGGAAAGAVAAEASAVGESKEGEVASGGGSSAESSAEKKPAPVDPKIEKELKKAVQKTAATFAPRASTATKNPAVPGTALYTIFEVQGYASMLLGGALSFNLVFPSNEPDIWRLMGMWSIWMFTIPSLRARDCSSKEKEALNYLFLLVPLINVIIPFFVKSFAVVWSADTVAFFVMYAWKLGWLQRS |
||||||||||
| Function | Protein RESISTANCE TO PHYTOPHTHORA 1, chloroplastic [UniProtKB/Swiss-Prot:M1C5M7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_05g0016560 | OsLiXu_05g0016560.01 | Chr05 | 20579896 | 20584119 | - | NAM | ||
| CDS seq | atgtacagccctctcggcagcggctgcgcgttcgcggccgcggccagctccgcgttcccgccggccaccgtccccggcgggatattcgcggggaggaggaggaggaggccggcgaggctggttcttgcgtgggcgagctcggatggctcggacggtggtggtgccgccgctggtgcagtggcggccgaggcttccgctgtgggagagagcaaagaaggggaggtggccagtggcggaggttcttccgctgagtcgtcggcggagaagaagccggctcctgcagttcagaagaccgcagcaacgtttgcaccaagggcgtccactgccacaaagaaccctgcagtgcctggaacagctctgtacactatctttgaggtccagggatatgcctccatgctgttgggtggagccctttccttcaatctcgtgttcccgtcgaatgagccggacatttggaggctgatgggaatgtggtccatctggatgttcactataccttctcttcgggcccgtgactgctcaagtaaggagaaagaggctctcaactacttgtttctactggtccctctaatcaacgtcattatcccgttcttcgtgaaatccttcgctgttgtctggtcagcagatacggttgcattctttgtgatgagctaa
More
|
|||||||
| Protein seq | MYSPLGSGCAFAAAASSAFPPATVPGGIFAGRRRRRPARLVLAWASSDGSDGGGAAAGAVAAEASAVGESKEGEVASGGGSSAESSAEKKPAPAVQKTAATFAPRASTATKNPAVPGTALYTIFEVQGYASMLLGGALSFNLVFPSNEPDIWRLMGMWSIWMFTIPSLRARDCSSKEKEALNYLFLLVPLINVIIPFFVKSFAVVWSADTVAFFVMS
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_05g0016560 | OsLiXu_05g0016560.02 | Chr05 | 20581457 | 20584140 | - | IsoSeq | ||
| CDS seq | aagaataacctcgcgcgaacaatgtacagccctctcggcagcggctgcgcgttcgcggccgcggccagctccgcgttcccgccggccaccgtccccggcgggatattcgcggggaggaggaggaggaggccggcgaggctggttcttgcgtgggcgagctcggatggctcggacggtggtggtgccgccgctggtgcagtggcggccgaggcttccgctgtgggagagagcaaagaaggggaggtggccagtggcggaggttcttccgctgagtcgtcggcggagaagaagccggctcctgttgatcccaagattgagaaggagctcaagaaggcagttcagaagaccgcagcaacgtttgcaccaagggcgtccactgccacaaagaaccctgcagtgcctggaacagctctgtacactatctttgaggtccagggatatgcctccatgctgttgggtggagccctttccttcaatctcgtgttcccgtcgaatgagccggacatttggaggctgatgggaatgtggtccatctggatgttcactataccttctcttcgggcccgtgactgctcaagtaaggagaaagaggctctcaactacttgtttctactggtccctctaatcaacgtcattatcccgttcttcgtgaaatccttcgctgttgtctggtcagcagatacggttgcattctttgtgatgtatgcttggaagcttggatggctgcaacggtca
More
|
|||||||
| Protein seq | KNNLARTMYSPLGSGCAFAAAASSAFPPATVPGGIFAGRRRRRPARLVLAWASSDGSDGGGAAAGAVAAEASAVGESKEGEVASGGGSSAESSAEKKPAPVDPKIEKELKKAVQKTAATFAPRASTATKNPAVPGTALYTIFEVQGYASMLLGGALSFNLVFPSNEPDIWRLMGMWSIWMFTIPSLRARDCSSKEKEALNYLFLLVPLINVIIPFFVKSFAVVWSADTVAFFVMYAWKLGWLQRS
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr05 | 20582798 | 20583841 | - | OsLiXu_05g0016560.02 | OsLiXu_05g0016560.01,OsLiXu_05g0016560.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 4.693105 | 0.000000 | 3.625995 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0404400 | RBH | 15.857861 | 14.699073 | 6.886518 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g33520 | RBH | 8.921567 | 8.330001 | 1.464387 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0404400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0016670 | RBH | 1.892924 | 0.000000 | 7.138669 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0016670 | RBH | 1.459983 | 0.0 | 2.536208 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0016460 | RBH | 6.937966 | 2.179218 | 5.951340 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0016500 | RBH | 0.575422 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0016700 | RBH | 48.593620 | 0.0 | 16.756458 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0302800 | RBH | 18.833834 | 7.6866265 | 7.518411 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0016200 | RBH | 2.014809 | 0.141819 | 1.143861 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0312600 | RBH | 35.4773485 | 2.4759595 | 5.719983 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0016510 | RBH | 1.846930 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0016440 | RBH | 3.395483 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0016550 | RBH | 30.475864 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0016630 | RBH | 2.038163 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G016100 | RBH | 2.503748 | 0.0 | 3.022131 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0016400 | RBH | 8.318538 | 4.025083 | 6.585148 |
