Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_05g0002550 | OGI:05006010 | 15/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr05:1990613-1992244 | ||||||||
| Gene Symbol | prx68 | ||||||||||
| DNA seq | atggcgatggcgacagcagcatgcagaaggcctgcagtgatgctcatggcgttcgccatggcggctgcggtgatgatgagcaccgtgccgccggcgtcggggacgacgacgctgcagtacgacttctactcgtcgtcgtgcccgaaagccgaggagacggtgaggaacgtcgttgagccgatgatcttcaacgatcccaccatgggcgccgccttcatccgcctcttcttccacgactgcttcgtcagagtatgtgtacaacaccatcatttatggaacatataagtttcgtagtaaattcatgaacatatatcatatttgaattgatttaattcaatttaataataacaattcgtataccagaacaggtattttacaagttggtatattagattgcaccgacctaacaaattcgtgtacccacgatgcaatttactcttttttttaactattccagtctttacttcaaagatactgcatccaattaattataacacatatattacaaatcaaaatggctaagaattataaaatcacagctgggttaaaaacaagaaaaccacttaaactacctgttttaaaacaaatgttaactatctaattataaaaaagtaattaatgaaagtgtatttgtaataattaatagggttgtgacgcgtccatcctgctggacccgacgagcagcaacacgcagccggagaagacggcgatcccgctgcgcggctacgacgccgtgaacaagatcaaggccgccgtcgaggccgtctgccccggcaaggtctcctgcgccgacatcctcgccttcgccgcccgcgactccgccgtcgtcaacggcaacttcgccttcgccatgccctccggccgccgcgacggcaccgcctcctccgcctccgacgtcgcccggttcatcccctccccggcgttccacctccaggacctcgtcgacagcttcgccgccaagggcctcaccgccgacgacctcgtcatcctctccggcgcccactccttcggcctcacccactgcgccttcgtcaccggcaggctctaccccaccgtcgactccaccatgaacgccacgttcgccgcggcgctcaagaagctgtgcccgccgccggcgagcggcggcggcgggagggcggtgagcaacaaccaggtgaccgaccccaacgtgctgagcaaccagtacttcaagaacgtggccgccggggaggtgatgttcacgtcggaccagacgctgacgagccgcgacgacaccaaggcgatggtcgacgacaacgccgccaacccggtggcgtggatggcgaggttcgcggcggcgatggtgaagatgggcggcgtcgaggtgctcaccgggaacgccggcgaggtcaggaaggtctgcttcgccaccaacacggcgagctgataattaagctacaagttctctttctccagcgatcggctggatcattaccacataatatatatattccttgttattttgatctcttaatttgtaaaataaaccatatttgataccagaatattcggtttgataacctgctactaattcttcctccgcttctggtaaatcaaagggtaatctttcacattccgccaaagaagaaattagaaaaaccagaaaacctatag
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| CDS seq | atggcgatggcgacagcagcatgcagaaggcctgcagtgatgctcatggcgttcgccatggcggctgcggtgatgatgagcaccgtgccgccggcgtcggggacgacgacgctgcagtacgacttctactcgtcgtcgtgcccgaaagccgaggagacgaatattcggtttgataacctgctactaattcttcctccgcttctggtaaatcaaagggtaatctttcacattccgccaaagaagaaattagaaaaaccagaaaacctatag |
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| Protein seq | MAMATAACRRPAVMLMAFAMAAAVMMSTVPPASGTTTLQYDFYSSSCPKAEETNIRFDNLLLILPPLLVNQRVIFHIPPKKKLEKPENL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_05g0002550 | OsLiXu_05g0002550.01 | Chr05 | 1990613 | 1992244 | + | NAM | ||
| CDS seq | atggcgatggcgacagcagcatgcagaaggcctgcagtgatgctcatggcgttcgccatggcggctgcggtgatgatgagcaccgtgccgccggcgtcggggacgacgacgctgcagtacgacttctactcgtcgtcgtgcccgaaagccgaggagacgaatattcggtttgataacctgctactaattcttcctccgcttctggtaaatcaaagggtaatctttcacattccgccaaagaagaaattagaaaaaccagaaaacctatag
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| Protein seq | MAMATAACRRPAVMLMAFAMAAAVMMSTVPPASGTTTLQYDFYSSSCPKAEETNIRFDNLLLILPPLLVNQRVIFHIPPKKKLEKPENL |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_05g0002550 | OsLiXu_05g0002550.02 | Chr05 | 1991959 | 1992159 | + | IsoSeq | ||
| CDS seq | caccgggaacgccggcgaggtcaggaaggtctgcttcgccaccaacacggcgagctgataattaagctacaagttctctttctccagcgatcggctggatcattaccacataatatatatattccttgttattttgatctcttaatttgtaaaataaaccat |
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| Protein seq | HRERRRGQEGLLRHQHGELIIKLQVLFLQRSAGSLPHNIYIPCYFDLLICKINH |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.180942 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0135000 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g04450 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0135000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0002520 | RBH | 0.0 | 4.106256 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0002550 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0002550 | RBH | 0.000000 | 39.502018 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0002500 | RBH | 0.0 | 0.646670 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0002570 | RBH | 0.000000 | 43.612640 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0002510 | RBH | 0.000000 | 5.477743 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0030200 | RBH | 1.310006 | 0.183724 | 0.4886 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0002510 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0002430 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0002540 | RBH | 0.0 | 16.372969 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0002570 | RBH | 0.553308 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G002420 | RBH | 0.000000 | 7.565678 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0002600 | RBH | 0.000000 | 0.000000 | 0.379309 |
