Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_05g0000480 | OGI:05000840 | 15/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr05:312781-316360 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gaaaccaaatccaaacccaaacccatccatcaccgcatctcatcgtctccgtctccgtctccggcgatggccaccaagccccgccgccgctccccgtcgctcccctcctcctcctcaacatcctactcgcgctcccccgcatcgccctcctccttctcctcctccccgtcgcgcagccgctcccttccccgccccgcggggggggcccgctcgccttcgccgccgccgccaccgcctcctcccaggtatgcgtagcaccgattggtagacttgttgagctttctttccgcattgcgtaccctggccttaccttaactttgttgctgctgctgctgcaggaaagcgtctccgccccctgagtccaccgtcctccatgttgaccatctctccaggaacgtcaatgaggatcatctcaaggagatttttggtcagcttccttccttccttcctaaatccttctccctccactgttatttctcagtgctttgtacaccgagtatgttgttgctgttgtatgcaggttatcatcttctcagtttttggctcaaaaacctgaatctttacacattttccttggcaagatcaacgctcgcgtctacgctggagttcattttactcaacattttaaagtagataaaatcataaccaactgatgttccaagaccatggctgagagccctgggatcctggggctattagtcttctaattttcacttttcacataataggaacggttcctgatgtaatagagctgaattgcactcaacaacattgctgcttctttagctcatacttctgctgttttgcagaaaattatggtgaagtcgtcaatgtggagctctccatggatagggtggtaagtaaatgggttcagtaatgcacaaggcagggggaaaactttcatcactcttgtctcatctttatatactcatcatttactttgattcaggtcaatcttccccgtgggtatggatatgttgagttcaagaatagagctgatgcagagaaggctcttctttacttggatggtgtatgaattctttcctctttttttttagataatggaagagtacatgaattctttcctgcaacattcatttggaattttagtatgaacatagcattaaaacttaaaatacttacaaatcttcacagggccaaattgatggaaatgttgttaaagtcagattcgcgcttccaccacagcagcaaagagctgctgcttctccaaaagctcttcacccttcaccaaaaagggatgtggttgatcataataaagttggtcctagtgctgaaaaggccaccaaacagcagcccaggaaacgtaagattttgctccttcttatgtaaccttcttcaagctactctttctctggaccagcatcaattttttgttatttttgctagtcaccttgccttcaattttgtttgccactttgattttgaaccataaccagtctttgtatttttactgggtggtaaaacatagtgtttgaactttgaaacctcacttgtttcctttcagcagcatctcctcaaagaaagccagctccatctccaagaaggcgatctcctccaagtcgaagagttgaatcacctaggcgtaggcctgattctcctccaattcgccgtcgaacagctccctctccaatcaggcgtggtggaactcctagcaggagaccaggatccccaatcagaaggcgctcaccctctccgccccctcgaagactaagatcaccaaagcggtgagtaatgcgtctgtgcgctctctttgttatcagcattttgtttggaagtgctgaaatatttcataataataacagcctatcaccaagaagagatcggggcagtccaatccgcaggcgctccccattgcctcgtagaaggctgtaagtattttaagcttgtctagttgatgtttttttctttagtatttcatatgttatctgaattatgaatttaggagaaggtggggggcatatgagttttgtgtatatcttttttaagttgcacagctatttgctctttattcatttcagtctgtagtggtctagcttctactgttctgttacgaagaagctaaaccatgctgggtttcttggatggttgctctacttagctttttttgaacattttagagtggataatcagagtgttgagctgaaaatctgattagtttattctatgcttctgggccaagattttgctttctctagcttctaataactctgaaagaggtgtttgttctcccctggaggcttccccccccccccccccccctttcttgcctagtaaactaattttgggattttgttattccattgaccattaattatttctgcaggactcctccaaggaggatgtggagtcctcccagaagaccacagtcacttcgccatcgcagtagatctcccattcaccgaccaattcgctccccttccagatcgatttctccacgcaggtaatgttaggattgatcgcccttttaccccgttttatattagtggccttgcatcttctaccagatgaaagcttacatcaaataatggaaccaggggtcggggtcctcctgtgcgccgtggacggtcatcctcatcgtattctgattcacctactcctccgagaagggtaaactcataactataaatgtcattatcttttttggaagaagagaaagaaatgtttttttgtctgtgtatttattcttcttgtaccaagacaaacatttttctcttgtgcagggaccaagaagggtgctcagaagtcgcagtcctagaaggtagtaatccttatgtgcctttcccttctcaagcagcttaaatgtgtggcatcgtaaaaatagaacattgaagcatcatatggtttcttttcaatggtggtaggcctttaagaggaagaagtgcctctagctacagccgtagtagcagcagctcaggttcccctatccgcaattaaaactcttggcatggcatggcatggaatggaatggtgtggtgatcctggtaggtaaatctttccgtctcgtcactttttatcgctgattttgtgtctttttgtctttgctgctgctgtttttgttgtcaagctttggttcttcgtgtgagtttggggctttgcgcgatggtgcatgcgttccctacgatcaagctggcactggaacatttagatattgctggaagttaaacattttcaagcttcttggaggctctgtctgaactctggatttctcctcttggagggagcgatgacttatgcatgtcaatgctgcagtaaataaagtggagtacattagtattctgtagtagcctattaaagcacagatttctgtgggttgggaatccaggagcaccaacatttactggtgaaattgaattcaccactcacttgtcgaacctgaaggcaagattgacttgacaatttctctttgtaatggttatgttttgttatctacgtggagttattttggacatctgaacctttagattccagtggagatgatatcatctccaaaaagatcttgtcatggagttgactatcaatgttttggcggacaggaaaaaaatgaaattaaatttggata
More
|
||||||||||
| CDS seq | aaacccatccatcaccgcatctcatcgtctccgtctccgtctccggcgatggccaccaagccccgccgccgctccccgtcgctcccctcctcctcctcaacatcctactcgcgctcccccgcatcgccctcctccttctcctcctccccgtcgcgcagccgctcccttccccgccccgcggggggggcccgctcgccttcgccgccgccgccaccgcctcctcccaggaaagcgtctccgccccctgagtccaccgtcctccatgttgaccatctctccaggaacgtcaatgaggatcatctcaaggagatttttgaaaattatggtgaagtcgtcaatgtggagctctccatggatagggtggtcaatcttccccgtgggtatggatatgttgagttcaagaatagagctgatgcagagaaggctcttctttacttggatggtggccaaattgatggaaatgttgttaaagtcagattcgcgcttccaccacagcagcaaagagctgctgcttctccaaaagctcttcacccttcaccaaaaagggatgtggttgatcataataaagttggtcctagtgctgaaaaggccaccaaacagcagcccaggaaaccatctcctcaaagaaagccagctccatctccaagaaggcgatctcctccaagtcgaagagttgaatcacctaggcgtaggcctgattctcctccaattcgccgtcgaacagctccctctccaatcaggcgtggtggaactcctagcaggagaccaggatccccaatcagaaggcgctcaccctctccgccccctcgaagactaagatcaccaaagcgcctatcaccaagaagagatcggggcagtccaatccgcaggcgctccccattgcctcgtagaaggctgactcctccaaggaggatgtggagtcctcccagaagaccacagtcacttcgccatcgcagtagatctcccattcaccgaccaattcgctccccttccagatcgatttctccacgcaggggtcggggtcctcctgtgcgccgtggacggtcatcctcatcgtattctgattcacctactcctccgagaaggggaccaagaagggtgctcagaagtcgcagtcctagaaggcctttaagaggaagaagtgcctctagctacagccgtagtagcagcagctcaggttcccctatccgc
More
|
||||||||||
| Protein seq | KPIHHRISSSPSPSPAMATKPRRRSPSLPSSSSTSYSRSPASPSSFSSSPSRSRSLPRPAGGARSPSPPPPPPPPRKASPPPESTVLHVDHLSRNVNEDHLKEIFENYGEVVNVELSMDRVVNLPRGYGYVEFKNRADAEKALLYLDGGQIDGNVVKVRFALPPQQQRAAASPKALHPSPKRDVVDHNKVGPSAEKATKQQPRKPSPQRKPAPSPRRRSPPSRRVESPRRRPDSPPIRRRTAPSPIRRGGTPSRRPGSPIRRRSPSPPPRRLRSPKRLSPRRDRGSPIRRRSPLPRRRLTPPRRMWSPPRRPQSLRHRSRSPIHRPIRSPSRSISPRRGRGPPVRRGRSSSSYSDSPTPPRRGPRRVLRSRSPRRPLRGRSASSYSRSSSSSGSPIR |
||||||||||
| Function | Serine/arginine-rich splicing factor SR45 [UniProtKB/Swiss-Prot:Q9SEE9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_05g0000480 | OsLiXu_05g0000480.01 | Chr05 | 312781 | 316360 | + | NAM | ||
| CDS seq | atggccaccaagccccgccgccgctccccgtcgctcccctcctcctcctcaacatcctactcgcgctcccccgcatcgccctcctccttctcctcctccccgtcgcgcagccgctcccttccccgccccgcggggggggcccgctcgccttcgccgccgccgccaccgcctcctcccaggaaagcgtctccgccccctgagtccaccgtcctccatgttgaccatctctccaggaacgtcaatgaggatcatctcaaggagatttttgaaaattatggtgaagtcgtcaatgtggagctctccatggatagggtggtcaatcttccccgtgggtatggatatgttgagttcaagaatagagctgatgcagagaaggctcttctttacttggatggtggccaaattgatggaaatgttgttaaagtcagattcgcgcttccaccacagcagcaaagagctgctgcttctccaaaagctcttcacccttcaccaaaaagggatgtggttgatcataataaagttggtcctagtgctgaaaaggccaccaaacagcagcccaggaaaccagcatctcctcaaagaaagccagctccatctccaagaaggcgatctcctccaagtcgaagagttgaatcacctaggcgtaggcctgattctcctccaattcgccgtcgaacagctccctctccaatcaggcgtggtggaactcctagcaggagaccaggatccccaatcagaaggcgctcaccctctccgccccctcgaagactaagatcaccaaagcgcctatcaccaagaagagatcggggcagtccaatccgcaggcgctccccattgcctcgactcctccaaggaggatgtggagtcctcccagaagaccacagtcacttcgccatcgcagtagatctcccattcaccgaccaattcgctccccttccagatcgatttctccacgcaggggtcggggtcctcctgtgcgccgtggacggtcatcctcatcgtattctgattcacctactcctccgagaaggggaccaagaagggtgctcagaagtcgcagtcctagaaggcctttaa
More
|
|||||||
| Protein seq | MATKPRRRSPSLPSSSSTSYSRSPASPSSFSSSPSRSRSLPRPAGGARSPSPPPPPPPPRKASPPPESTVLHVDHLSRNVNEDHLKEIFENYGEVVNVELSMDRVVNLPRGYGYVEFKNRADAEKALLYLDGGQIDGNVVKVRFALPPQQQRAAASPKALHPSPKRDVVDHNKVGPSAEKATKQQPRKPASPQRKPAPSPRRRSPPSRRVESPRRRPDSPPIRRRTAPSPIRRGGTPSRRPGSPIRRRSPSPPPRRLRSPKRLSPRRDRGSPIRRRSPLPRLLQGGCGVLPEDHSHFAIAVDLPFTDQFAPLPDRFLHAGVGVLLCAVDGHPHRILIHLLLREGDQEGCSEVAVLEGL
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_05g0000480 | OsLiXu_05g0000480.02 | Chr05 | 312781 | 316330 | + | NAM | ||
| CDS seq | atggccaccaagccccgccgccgctccccgtcgctcccctcctcctcctcaacatcctactcgcgctcccccgcatcgccctcctccttctcctcctccccgtcgcgcagccgctcccttccccgccccgcggggggggcccgctcgccttcgccgccgccgccaccgcctcctcccaggaaagcgtctccgccccctgagtccaccgtcctccatgttgaccatctctccaggaacgtcaatgaggatcatctcaaggagatttttgaaaattatggtgaagtcgtcaatgtggagctctccatggatagggtggtcaatcttccccgtgggtatggatatgttgagttcaagaatagagctgatgcagagaaggctcttctttacttggatggtggccaaattgatggaaatgttgttaaagtcagattcgcgcttccaccacagcagcaaagagctgctgcttctccaaaagctcttcacccttcaccaaaaagggatgtggttgatcataataaagttggtcctagtgctgaaaaggccaccaaacagcagcccaggaaaccatctcctcaaagaaagccagctccatctccaagaaggcgatctcctccaagtcgaagagttgaatcacctaggcgtaggcctgattctcctccaattcgccgtcgaacagctccctctccaatcaggcgtggtggaactcctagcaggagaccaggatccccaatcagaaggcgctcaccctctccgccccctcgaagactaagatcaccaaagcgcctatcaccaagaagagatcggggcagtccaatccgcaggcgctccccattgcctcgactcctccaaggaggatgtggagtcctcccagaagaccacagtcacttcgccatcgcagtagatctcccattcaccgaccaattcgctccccttccagatcgatttctccacgcagggaccaagaagggtgctcagaagtcgcagtcctag
More
|
|||||||
| Protein seq | MATKPRRRSPSLPSSSSTSYSRSPASPSSFSSSPSRSRSLPRPAGGARSPSPPPPPPPPRKASPPPESTVLHVDHLSRNVNEDHLKEIFENYGEVVNVELSMDRVVNLPRGYGYVEFKNRADAEKALLYLDGGQIDGNVVKVRFALPPQQQRAAASPKALHPSPKRDVVDHNKVGPSAEKATKQQPRKPSPQRKPAPSPRRRSPPSRRVESPRRRPDSPPIRRRTAPSPIRRGGTPSRRPGSPIRRRSPSPPPRRLRSPKRLSPRRDRGSPIRRRSPLPRLLQGGCGVLPEDHSHFAIAVDLPFTDQFAPLPDRFLHAGTKKGAQKSQS
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_05g0000480 | OsLiXu_05g0000480.03 | Chr05 | 312797 | 316248 | + | IsoSeq | ||
| CDS seq | aaacccatccatcaccgcatctcatcgtctccgtctccgtctccggcgatggccaccaagccccgccgccgctccccgtcgctcccctcctcctcctcaacatcctactcgcgctcccccgcatcgccctcctccttctcctcctccccgtcgcgcagccgctcccttccccgccccgcggggggggcccgctcgccttcgccgccgccgccaccgcctcctcccaggaaagcgtctccgccccctgagtccaccgtcctccatgttgaccatctctccaggaacgtcaatgaggatcatctcaaggagatttttgaaaattatggtgaagtcgtcaatgtggagctctccatggatagggtggtcaatcttccccgtgggtatggatatgttgagttcaagaatagagctgatgcagagaaggctcttctttacttggatggtggccaaattgatggaaatgttgttaaagtcagattcgcgcttccaccacagcagcaaagagctgctgcttctccaaaagctcttcacccttcaccaaaaagggatgtggttgatcataataaagttggtcctagtgctgaaaaggccaccaaacagcagcccaggaaaccatctcctcaaagaaagccagctccatctccaagaaggcgatctcctccaagtcgaagagttgaatcacctaggcgtaggcctgattctcctccaattcgccgtcgaacagctccctctccaatcaggcgtggtggaactcctagcaggagaccaggatccccaatcagaaggcgctcaccctctccgccccctcgaagactaagatcaccaaagcgcctatcaccaagaagagatcggggcagtccaatccgcaggcgctccccattgcctcgtagaaggctgactcctccaaggaggatgtggagtcctcccagaagaccacagtcacttcgccatcgcagtagatctcccattcaccgaccaattcgctccccttccagatcgatttctccacgcaggggtcggggtcctcctgtgcgccgtggacggtcatcctcatcgtattctgattcacctactcctccgagaaggggaccaagaagggtgctcagaagtcgcagtcctagaaggcctttaagaggaagaagtgcctctagctacagccgtagtagcagcagctcaggttcccctatccgc
More
|
|||||||
| Protein seq | KPIHHRISSSPSPSPAMATKPRRRSPSLPSSSSTSYSRSPASPSSFSSSPSRSRSLPRPAGGARSPSPPPPPPPPRKASPPPESTVLHVDHLSRNVNEDHLKEIFENYGEVVNVELSMDRVVNLPRGYGYVEFKNRADAEKALLYLDGGQIDGNVVKVRFALPPQQQRAAASPKALHPSPKRDVVDHNKVGPSAEKATKQQPRKPSPQRKPAPSPRRRSPPSRRVESPRRRPDSPPIRRRTAPSPIRRGGTPSRRPGSPIRRRSPSPPPRRLRSPKRLSPRRDRGSPIRRRSPLPRRRLTPPRRMWSPPRRPQSLRHRSRSPIHRPIRSPSRSISPRRGRGPPVRRGRSSSSYSDSPTPPRRGPRRVLRSRSPRRPLRGRSASSYSRSSSSSGSPIR
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr05 | 314104 | 314309 | + | OsLiXu_05g0000480.01 | OsLiXu_05g0000480.01,OsLiXu_05g0000480.03,OsLiXu_05g0000480.02 | All |
| SE | Chr05 | 315241 | 315522 | + | OsLiXu_05g0000480.01,OsLiXu_05g0000480.03 | OsLiXu_05g0000480.02,OsLiXu_05g0000480.01,OsLiXu_05g0000480.03 | All |
| A5 | Chr05 | 314659 | 315125 | + | OsLiXu_05g0000480.03 | OsLiXu_05g0000480.02,OsLiXu_05g0000480.01,OsLiXu_05g0000480.03 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.076841 | 0.733531 | 1.769956 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0105900 | RBH | 1.916974 | 3.343771 | 5.314577 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g01540 | RBH | 1.220422 | 1.965069 | 1.158791 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0105900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0000460 | RBH | 0.609737 | 4.320593 | 10.041445 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0000450 | RBH | 0.503957 | 2.054094 | 5.864076 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0000480 | RBH | 0.923815 | 11.631597 | 17.489538 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0000460 | RBH | 0.337889 | 0.287735 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0000460 | RBH | 2.530299 | 1.857503 | 20.024275 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0004900 | RBH | 2.995616 | 9.1411135 | 10.175304 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0000470 | RBH | 0.702319 | 0.443938 | 1.998512 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0034900 | SBH | 23.1540345 | 39.973673 | 54.882347 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0000480 | RBH | 0.044113 | 0.480498 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0000430 | RBH | 0.193837 | 1.525494 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0000450 | RBH | 6.665135 | 3.433362 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0000480 | RBH | 0.665322 | 4.262145 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G000440 | RBH | 0.375100 | 1.759073 | 4.909905 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0000470 | RBH | 3.397593 | 23.838415 | 14.006028 |
