Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_05g0000410 | OGI:05000750 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr05:280475-283013 | ||||||||
| Gene Symbol | OsRab11A2 | ||||||||||
| DNA seq | gagttgagttgttgttgaggaggaagtgaagaagaggcagtagaaagaagtagcagtagcagaagagaagggaggaagggagttggatagatggcggggacgcggcgtgcggaggaggagtacgactacctgttcaaggtggttctcatcggcgactccggcgtcggcaagtccaacctcctctcccgtttcacccgcaacgagttctgcctcgagtccaagtccaccatcggcgtcgagttcgccacccgcaccctccatgtatgtccatctttcatctccttccttcctgcttactgtacttaccactagctctagctaccctagctgcttcgtaattcctttctcgatcaattcaattcctctttctcctcgcgcgatctaccattttctgcaagcaacccctcctctaccttagatccgatctttctcttcaaccagcaattcTtttttattttgacaaatccagatcagggatccaatctgcaatcccctctctgtcgcattctgcttttttctcctgctaaaaaaaacgtgagctttgctacctagatctaccacacatgcttctgctcaaccatgatctactacaccaatttcatcaattccacatctacctcgccactccactacttgcatcattttactccactaatttcgtttaacacacagaaaacagtttctttcttcttcttcttcttcttctttttttttaaaaaaaaaaccagaggaggaactcaatacatacatacataataatatggagataggagtaacaagttgctgcagctcctgcttaaaaaataacaacagtgtgtgagcggagcgctcatccacatacatgtgggcgatgacgaggtgccagctgcgtgtgtgccttatgggatccaatggcttgattgtgatatcctgataggccataatcccaactgcgccaccacctttactacctcgttcatctcactgtcacactcaattctgtacctggcttagcaactgcctgacagctactagtacctctgtccacagttatagtttaatttccttttaacaaaagcaatactttccacagtaatattaataacctcttaaagtttctttctttctttcttgttgtacctgctaggcttgacagtgtctagctgcgaggcttaagctgctaaatgctaatgacaatcaacacacacttgttatataccgaccaagaaattgaaaatggaccaacacagagaattgtgacaccatgctctatgatactttgaagatataataggttgcagttctagtcagattgtactaaattttacactttgggatagcaccctctaatgaacttaccatgataaagtaataaacttccagtgccatatgcgtcatgcttatttggagtttggccttcaactcatcagccagttcagattctttccaagttccaaattatggcctctcctcccaattttatcttttttggatagttactgaacactagttctctctattgaatgtaaacaaatgcattagcgttggaaaaattgaaactgatccatttgcatgaaatctttgacttgatgtaggtggagggcaagataatcaaggcgcagatctgggacaccgcaggtcaagagcgatacagagctatcaccagcgcttactaccgtggagctctaggagcagtcctggtctacgacgtgagcaagcccacaacctttgacaacatcagccggtggctcaaggagctccgcgaccacgctgatgcaaacatcagaatcatgctcgtcggcaacaagactgatctgaagcaccttcgggccgtcgcgacagacgatgcgcacaagtttgctgaggcagaagggctgtcctacattgagacttcagctcttgaggccacaaatgtggaggaggcattccagctgattctcggtgacatttacagggccatcagcaagaagcccgtggcatcagatgaaggcggggcaggtgccgctggaggtgtcaaagaagggaagacgatcaatgtcgctgccggtgatgccaatagtgaaaagaagcaatgctgctcaacttagaacgaatccttcagtttcagatgtcatttcgtgtaccttgtgtggtgcttgtgattgttctttctttttaagtttattaaagcttcgttgattcattttgtcagataaatatttaccttgctatacctgacagtcatatattacctaaagcagttaattactacatatacagtagtatcatgtcaagatcattggttcctcctgcattactcttgtccattttttcagggttgcatcagtcaacatcctgctaataagcagaaactgacaagcctccaaacaccagcaaatgacaagagtgacaagcttgcatcaagcatcatgatgttcagttccaacatcatgcatcatatatattaaatttaggcttataaactgttttaacaaaccgatgatatcacaaactgtggcaagtaacgaacactttgtgcacgcatgatgatgttgtctaatgctaaagtatcatccaatcc
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| CDS seq | atggcggggacgcggcgtgcggaggaggagtacgactacctgttcaaggtggttctcatcggcgactccggcgtcggcaagtccaacctcctctcccgtttcacccgcaacgagttctgcctcgagtccaagtccaccatcggcgtcgagttcgccacccgcaccctccatgtggagggcaagataatcaaggcgcagatctgggacaccgcaggtcaagagcgatacagagctatcaccagcgcttactaccgtggagctctaggagcagtcctggtctacgacgtgagcaagcccacaacctttgacaacatcagccggtggctcaaggagctccgcgaccacgctgatgcaaacatcagaatcatgctcgtcggcaacaagactgatctgaagcaccttcgggccgtcgcgacagacgatgcgcacaagtttgctgaggcagaagggctgtcctacattgagacttcagctcttgaggccacaaatgtggaggaggcattccagctgattctcggtgacatttacagggccatcagcaagaagcccgtggcatcagatgaaggcggggcaggtgccgctggaggtgtcaaagaagggaagacgatcaatgtcgctgccggtgatgccaatagtgaaaagaagcaatgctgctcaacttag
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| Protein seq | MAGTRRAEEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLHVEGKIIKAQIWDTAGQERYRAITSAYYRGALGAVLVYDVSKPTTFDNISRWLKELRDHADANIRIMLVGNKTDLKHLRAVATDDAHKFAEAEGLSYIETSALEATNVEEAFQLILGDIYRAISKKPVASDEGGAGAAGGVKEGKTINVAAGDANSEKKQCCST |
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| Function | Ras-related protein RABA2a [UniProtKB/Swiss-Prot:O04486] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_05g0000410 | OsLiXu_05g0000410.01 | Chr05 | 280475 | 283013 | + | NAM | ||
| CDS seq | atggcggggacgcggcgtgcggaggaggagtacgactacctgttcaaggtggttctcatcggcgactccggcgtcggcaagtccaacctcctctcccgtttcacccgcaacgagttctgcctcgagtccaagtccaccatcggcgtcgagttcgccacccgcaccctccatgtggagggcaagataatcaaggcgcagatctgggacaccgcaggtcaagagcgatacagagctatcaccagcgcttactaccgtggagctctaggagcagtcctggtctacgacgtgagcaagcccacaacctttgacaacatcagccggtggctcaaggagctccgcgaccacgctgatgcaaacatcagaatcatgctcgtcggcaacaagactgatctgaagcaccttcgggccgtcgcgacagacgatgcgcacaagtttgctgaggcagaagggctgtcctacattgagacttcagctcttgaggccacaaatgtggaggaggcattccagctgattctcggtgacatttacagggccatcagcaagaagcccgtggcatcagatgaaggcggggcaggtgccgctggaggtgtcaaagaagggaagacgatcaatgtcgctgccggtgatgccaatagtgaaaagaagcaatgctgctcaacttag
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| Protein seq | MAGTRRAEEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLHVEGKIIKAQIWDTAGQERYRAITSAYYRGALGAVLVYDVSKPTTFDNISRWLKELRDHADANIRIMLVGNKTDLKHLRAVATDDAHKFAEAEGLSYIETSALEATNVEEAFQLILGDIYRAISKKPVASDEGGAGAAGGVKEGKTINVAAGDANSEKKQCCST
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.150347 | 2.030380 | 0.750780 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0105100 | RBH | 0.0 | 0.286799 | 11.950360 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g01480 | RBH | 0.000000 | 0.119094 | 1.935962 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0105100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0000390 | RBH | 0.152591 | 26.423498 | 8.206120 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0000380 | RBH | 0.000000 | 4.313179 | 1.536700 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0000410 | RBH | 0.507404 | 45.159660 | 10.324422 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0000390 | RBH | 0.000000 | 1.202510 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0000390 | RBH | 0.838138 | 49.187649 | 17.968702 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0004200 | RBH | 8.5185565 | 12.9514865 | 21.801034 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0000400 | RBH | 0.155431 | 3.316819 | 0.886010 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0004600 | RBH | 11.3981895 | 17.344375 | 28.9022735 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0000410 | RBH | 0.000000 | 0.093946 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0000360 | RBH | 0.0 | 15.816396 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0000370 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0022140 | RBH | 0.386832 | 0.0 | 0.965852 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0000410 | RBH | 0.095061 | 14.399635 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G000370 | RBH | 0.000000 | 15.669392 | 3.141786 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0000400 | RBH | 0.000000 | 19.029818 | 10.886806 |
