Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_05g0000230 | OGI:05000430 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr05:187484-190169 | ||||||||
| Gene Symbol | OsbHLH083 | ||||||||||
| DNA seq | acacatttgcaaggcatgcatattgcacacacacacatgcacatttctggagtattaaacacatgaaaagggagtagagtatctacagatgcaacacacagaagagggggaggaacagcacagcagcagatgaatgaatgaagcgaaacgcaggaggagcaacagtacatgtcctcgtcttggtactgtctgcatgcagtctTggtgacggtgaaggcagagatatcgatagtgtggattttggagcccaggaggagatggtacagctgagccagcaaccaaaggatccttgcgagatcttcaggaggttcaactctgtcggcttgccccactcttcttcttcagcttgctcacttcacttcacttgttgattcggcatctcctcctctatgtgatgctgcttcgtggccattcctagtttgtacaaatgttactagatagctgcattagtctggcaaatgcaacagttaacacatcatcagtcaccatttgcaaagaacataagctttgcttcttgctaatcaatcatgcttgtatctcaattaccagaatatgcatgggttctactactaatgaaagaagcagtggctgctcatctcgacctggtgaagagagccctgctgctggccttgctctccaacttgcatcaccaccatgttcatgtggctgctgccatcctgcaatgcaaaggtgaagcacagacagcgcatgcatgatcagtgtcacattgccttccttatctgctactcctactactcttgatgagtgcttggtggaataatttgtgttcaacacaggagaagcgacatcacatctgatgcagtcatgcagattgggttcagattcagagagactatggttatcatcttgacctgagcaaagcctgtgggtcctcctcctagtccttggagtgaaatgcctgtactccccatttggcccatgcactgcaccatctcatgtggcatctttgcaagcttaatcaaacaaggaaggtaatactaagtgagtcagagatattgatcgcatgcatggcagaagcaaaactggaatcacagaattcttcagagatgcttgcttgcgtttggattgatgctgtcattgttccctattttactttacctgtcgaagaacatctgggtgcatatcaatgcccggtccaaactcatacatcaaagggctaagggaggcaagcttcatggacagaaactgaatgagcacaaaagaatgaatcagttcttcatatacagagcagaagagccatcgatgatactacgtgctcaattacgctatttcaattcttatctgagtgacatatagcagcacctcaacttggttctgcagagattgcacatagctgatgatctcatctagcatgagggctttccctgtgaccttgtcacaaccaggaaccaggctttgcagcatcttcatcctctcactgatcttctcccttctcacctataagtaacaaatcaacagatgttactactcctgtagttaagtgaagggcactaacaaacagctgttactactaattaagataacaacgattcagataagagaacaaaagactggtgagtgagtgaccctctcagcaaggctgtggctgtctgttgcttggcctctccttgccctcacatgaatgtacccagctggtggctccccacctgctgcctccttggccttcttcttcacatcatcatcatgttgatgtagtaccacccttcttgcctttttctcctcaagtcccttcaagcccacattgctcctcttgtgctttctactcttgccccaacttgcatcctaaatggcaagaccacatagtaacccccagcaccacataaggtagatcattacatgaacacaacataaaatgggcccatcatacatatttggacacttaccaaaggggttaacaacttaaacatcaatgataattctacttgcatcagaaagcagtcactgctacatttacatatgtatatgcacttagttccaggttttgggtagatttccacttggtactagtaggacgaagccgcatttttttcagataaagatgatcaccaagcaaataactcttcaatatatcatgcatcatgtgggaagaagctaaacctttgaggtAaaaaaaaaacatatgtatgctgaaacactgaaaaaATatatatatatataactgaattttgcagtttcatctagttgtatatatacattttcatggcaaagtgcgagcaaagatagcacatgtagtaggagcttaattaccatatcttgagttgagcccaatgaacaagggcaacttccttgaatgccaggcacccatttgttgtcgccggcagcggcagcggcattgtcaaagacaaaggaaagagggcactcctgtggctgcagcactattggtgagtacaccattggcattgaggtggggtcaagggagctgcagctgctgctctcatactcataggccgccatggctgctgctgccttctcttcaaggttgctgcagccggcagggaagcctgggacaggaagaggctctggagcagaaaggaagcagtaggggagaagtgaagatgaggaggattggtgcagctgctgctcatgttcatgctcaagctgcccacacaagctctccattggtatgctgcctcctatgttgatgctctattgctactactcctag
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| CDS seq | atggagagcttgtgtgggcagcttgagcatgaacatgagcagcagctgcaccaatcctcctcatcttcacttctcccctactgcttcctttctgctccagagcctcttcctgtcccaggcttccctgccggctgcagcaaccttgaagagaaggcagcagcagccatggcggcctatgagtatgagagcagcagctgcagctcccttgaccccacctcaatgccaatggtgtactcaccaatagtgctgcagccacaggagtgccctctttcctttgtctttgacaatgccgctgccgctgccggcgacaacaaatgggtgcctggcattcaaggaagttgcccttgttcattgggctcaactcaagatatggatgcaagttggggcaagagtagaaagcacaagaggagcaatgtgggcttgaagggacttgaggagaaaaaggcaagaagggtggtactacatcaacatgatgatgatgtgaagaagaaggccaaggaggcagcaggtggggagccaccagctgggtacattcatgtgagggcaaggagaggccaagcaacagacagccacagccttgctgagagggtgagaagggagaagatcagtgagaggatgaagatgctgcaaagcctggttcctggttgtgacaaggtcacagggaaagccctcatgctagatgagatcatcagctatgtgcaatctctgcagaaccaagttgagtttctgtccatgaagcttgcctcccttagccctttgatgtatgagtttggaccgggcattgatatgcacccagatgttcttcgacagcttgcaaagatgccacatgagatggtgcagtgcatgggccaaatggggagtacaggcatttcactccaaggactaggaggaggacccacaggctttgctcaggatggcagcagccacatgaacatggtggtgatgcaagttggagagcaaggccagcagcagggctctcttcaccaggtcgagatgagcagccactgcttctttcattag
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| Protein seq | MESLCGQLEHEHEQQLHQSSSSSLLPYCFLSAPEPLPVPGFPAGCSNLEEKAAAAMAAYEYESSSCSSLDPTSMPMVYSPIVLQPQECPLSFVFDNAAAAAGDNKWVPGIQGSCPCSLGSTQDMDASWGKSRKHKRSNVGLKGLEEKKARRVVLHQHDDDVKKKAKEAAGGEPPAGYIHVRARRGQATDSHSLAERVRREKISERMKMLQSLVPGCDKVTGKALMLDEIISYVQSLQNQVEFLSMKLASLSPLMYEFGPGIDMHPDVLRQLAKMPHEMVQCMGQMGSTGISLQGLGGGPTGFAQDGSSHMNMVVMQVGEQGQQQGSLHQVEMSSHCFFH |
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| Function | Transcription factor bHLH137 [UniProtKB/Swiss-Prot:Q93W88] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_05g0000230 | OsLiXu_05g0000230.01 | Chr05 | 187484 | 190169 | - | NAM | ||
| CDS seq | atggagagcttgtgtgggcagcttgagcatgaacatgagcagcagctgcaccaatcctcctcatcttcacttctcccctactgcttcctttctgctccagagcctcttcctgtcccaggcttccctgccggctgcagcaaccttgaagagaaggcagcagcagccatggcggcctatgagtatgagagcagcagctgcagctcccttgaccccacctcaatgccaatggtgtactcaccaatagtgctgcagccacaggagtgccctctttcctttgtctttgacaatgccgctgccgctgccggcgacaacaaatgggtgcctggcattcaaggaagttgcccttgttcattgggctcaactcaagatatggatgcaagttggggcaagagtagaaagcacaagaggagcaatgtgggcttgaagggacttgaggagaaaaaggcaagaagggtggtactacatcaacatgatgatgatgtgaagaagaaggccaaggaggcagcaggtggggagccaccagctgggtacattcatgtgagggcaaggagaggccaagcaacagacagccacagccttgctgagagggtgagaagggagaagatcagtgagaggatgaagatgctgcaaagcctggttcctggttgtgacaaggtcacagggaaagccctcatgctagatgagatcatcagctatgtgcaatctctgcagaaccaagttgagtttctgtccatgaagcttgcctcccttagccctttgatgtatgagtttggaccgggcattgatatgcacccagatgttcttcgacagcttgcaaagatgccacatgagatggtgcagtgcatgggccaaatggggagtacaggcatttcactccaaggactaggaggaggacccacaggctttgctcaggatggcagcagccacatgaacatggtggtgatgcaagttggagagcaaggccagcagcagggctctcttcaccaggtcgagatgagcagccactgcttctttcattag
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| Protein seq | MESLCGQLEHEHEQQLHQSSSSSLLPYCFLSAPEPLPVPGFPAGCSNLEEKAAAAMAAYEYESSSCSSLDPTSMPMVYSPIVLQPQECPLSFVFDNAAAAAGDNKWVPGIQGSCPCSLGSTQDMDASWGKSRKHKRSNVGLKGLEEKKARRVVLHQHDDDVKKKAKEAAGGEPPAGYIHVRARRGQATDSHSLAERVRREKISERMKMLQSLVPGCDKVTGKALMLDEIISYVQSLQNQVEFLSMKLASLSPLMYEFGPGIDMHPDVLRQLAKMPHEMVQCMGQMGSTGISLQGLGGGPTGFAQDGSSHMNMVVMQVGEQGQQQGSLHQVEMSSHCFFH
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0103000 | RBH | 0.481585 | 0.0 | 0.397016 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g01256 | RBH | 0.305919 | 0.0 | 0.091215 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0103000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0000220 | RBH | 0.0 | 0.0 | 0.772528 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0000230 | RBH | 0.078794 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0000240 | RBH | 0.0 | 0.0 | 2.274113 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0000230 | RBH | 0.092376 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0000230 | RBH | 1.795060 | 0.000000 | 1.889679 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0002200 | RBH | 1.0559495 | 1.9388965 | 2.7424355 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0000240 | RBH | 0.081741 | 0.0 | 0.466263 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0002500 | RBH | 2.161819 | 1.272468 | 12.302589 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0000240 | RBH | 0.036009 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0000180 | RBH | 0.165694 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0000200 | RBH | 2.838266 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0021980 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0000250 | RBH | 0.067052 | 0.852287 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G000220 | RBH | 0.048804 | 0.398776 | 1.016626 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0000230 | RBH | 0.000000 | 2.432645 | 0.275791 |
