Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_04g0031990 | OGI:04103170 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr04:37562248-37563337 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttaactgcatgatgcatgcacactgtgtagtatgaacatgaccgattgatttaatttggggtaccttctccggtacgtgctgctgctatcggtcaagtagacgtcgccggtcctctggtcgacgtcgaagccgttgaggaagaacagaaaaggttcttttgtgtggtgccgcaaagcctgcgtgtgtttgctcttgttgtgtgcaatcgtgtagtgcaaaatctgtgtaagaataagtgtgtgcgtccacgatgttagaataaatggactagtaaattagctagtaaaatactttccggttgaggaagttgaacggcacatcgatggcctccgtcgtcaccaccttggccagcccgccgcgcgccggcaccctcaggaggcccagatacgcgtcggccacgtacaggtcgccagaggcgtggtggaactgcagccccaacggccgcccgcacacgctctccggcaccaccagcttcttctccggcgagcaaacgctgacgctcctggtggtgaacaaatcgtcagtgcatgcttacttacgggcgccggcagcgtcatggcggcggagggaaaggcggagaggaggcagccgtcgacggcgagctcggcggcggcgagctctccttccgacacatcgcatacagagcgacgagcgccgaactggccgaggcgtagaaggccagcagcggcgcggtctttatcccgtaggcgtgcgcagcgcgagcagggactcgtcgccaccatggccgactacggcgactcgtccccgcactctgccgcggccatcgacggcgcaccaccatggagacggtgaaccagttggagaggaggaagacggcgactcccaggctcccacacctcctgagcaagccgaacgacacggcgtagttgtccctcttgatgtcgctgttgccgcagagcacgcagaggccgagcacgaggatgggaagacgatgtagttgacgaggagaaagaaggggctcgcgagcatgacggggaggacggagtggtagtagtcggtgacgaacccgagctcgttgtcgatcacctggaacagcgtcgccgccaccgtcgccctatcggagagggg
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| CDS seq | atgctcgcgagccccttctttctcctcgtcaactacatcgtcttcccatcctcgtgctcggcctctgcgtgctctgcggcaacagcgacatcaagagggacaactacgccgtgtcgttcggcttgctcaggaggtgtgggagcctgggagtcgccgtcttcctcctctccaactggttcaccgagcgtcagcgtttgctcgccggagaagaagctggtggtgccggagagcgtgtgcgggcggccgttggggctgcagttccaccacgcctctggcgacctgtacgtggccgacgcgtatctgggcctcctgagggtgccggcgcgcggcgggctggccaaggtggtgacgacggaggccatcgatgtgccgttcaacttcctcaaccggaaaattttgcactacacgattgcacacaacaagagcaaacacacgcaggctttgcggcaccacacaaaagaaccttttctgttcttcctcaacggcttcgacgtcgaccagaggaccggcgacgtctacttgaccgatagcagcagcacgtaccggagaagtgtgcatgcatcatgcagttaa
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| Protein seq | MLASPFFLLVNYIVFPSSCSASACSAATATSRGTTTPCRSACSGGVGAWESPSSSSPTGSPSVSVCSPEKKLVVPESVCGRPLGLQFHHASGDLYVADAYLGLLRVPARGGLAKVVTTEAIDVPFNFLNRKILHYTIAHNKSKHTQALRHHTKEPFLFFLNGFDVDQRTGDVYLTDSSSTYRRSVHASCS |
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| Function | Protein STRICTOSIDINE SYNTHASE-LIKE 3 [UniProtKB/Swiss-Prot:Q8VWF6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_04g0031990 | OsLiXu_04g0031990.01 | Chr04 | 37562248 | 37563337 | - | NAM | ||
| CDS seq | atgctcgcgagccccttctttctcctcgtcaactacatcgtcttcccatcctcgtgctcggcctctgcgtgctctgcggcaacagcgacatcaagagggacaactacgccgtgtcgttcggcttgctcaggaggtgtgggagcctgggagtcgccgtcttcctcctctccaactggttcaccgagcgtcagcgtttgctcgccggagaagaagctggtggtgccggagagcgtgtgcgggcggccgttggggctgcagttccaccacgcctctggcgacctgtacgtggccgacgcgtatctgggcctcctgagggtgccggcgcgcggcgggctggccaaggtggtgacgacggaggccatcgatgtgccgttcaacttcctcaaccggaaaattttgcactacacgattgcacacaacaagagcaaacacacgcaggctttgcggcaccacacaaaagaaccttttctgttcttcctcaacggcttcgacgtcgaccagaggaccggcgacgtctacttgaccgatagcagcagcacgtaccggagaagtgtgcatgcatcatgcagttaa
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| Protein seq | MLASPFFLLVNYIVFPSSCSASACSAATATSRGTTTPCRSACSGGVGAWESPSSSSPTGSPSVSVCSPEKKLVVPESVCGRPLGLQFHHASGDLYVADAYLGLLRVPARGGLAKVVTTEAIDVPFNFLNRKILHYTIAHNKSKHTQALRHHTKEPFLFFLNGFDVDQRTGDVYLTDSSSTYRRSVHASCS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g59300 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0031920 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0032690 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0032260 | RBH | 0.0 | 1.768901 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0032120 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0032390 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0031000 | RBH | 0.0 | 0.000000 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0562800 | RBH | 0.048037 | 6.627797 | 0.0361925 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0031470 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0031290 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0031400 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0015090 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0031950 | RBH | 0.0 | 3.728535 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G031460 | RBH | 0.0 | 0.713568 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0031200 | RBH | 0.0 | 0.000000 | 0.0 |
