Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_04g0023350 | OGI:04084780 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr04:30546526-30549767 | ||||||||
| Gene Symbol | DOF18, OsDof18, Dof18, OsDof-18, DLN119, OsDLN119, OsDOF17 | ||||||||||
| DNA seq | aaaagtacagaaacaaggagcaaaaagatgtgcattatagtttggctgtaaatataacaataagatagtaggagtactatacaaattaaattacatgcgctcaaaaaccccttttgcaactactactactataactttatatgacctctacacatcccatagaagttaacaacaataacaagttaagctagaaaaggatggaatcactactgtttggatcaacacaaagtcatagatcagctgcaaacccttcccaagatctacatctacaaccaaaagcttgatgcattgccgttaccaaacatactgtagctaagtttgacatacatgcatggtgatgggggtccatttttctttcttcctccccaaccgagtccttcccttcatccttcgcttcacaatgcccctgcaaaaccaatgagctacacaccacatgcatgcctctgtaccacgtacgtacacgccatcggactcgaagccagcctaaaaagaagcttcccatgctctactagtctagtactgcactgacgcatgcagctctctaaccacacattgatcaagcgatgactagtagtaacagtgatcaatggagagaactggaagatcagaattcagaaagagatcgatcatgcatcatgatccttttgaggaatcatgtgagctcggttgttgtgttgagcaccaaagccgatcaacaatcacatgaaagacagcaaaagagagaagaaagaacaccaagatgatgatgcaacaccgggaaagaagaagaagagagatcaaaacaccttatacggagtaacagtgaatcagtgatggattatcgccaatgccaacctcttattaaaaccctcgtcgtctctactgcctatctccaatttgaacccacgccaccacagcgcggaggcttttgcatgagccatgcatgcatgcatggccgccgccgccgcattaccaagaagtgccactgccgccgccgatcatgccgttccagaaccccggcgtgtcgtgcccgcctgggccgcctcctccgccaccggcctgctgctccttgccgtgatcaaactgatggccgccgtctacgccggcgccgccgccgcttgcgcctccaccgccagtgccagagctgaccgtcggcttcaagtcctcgaacgggaacagcaacctgcccgtgctctccggcacgccttgcaaccccgcgctggagccgaaccccgcggcggatggcccgcccaccgagccgtgcgcgtccaacgagaacccgagcaagctctgggacgactgtggcggcggcggcggcgcgcggaactcaccgagcgcgaaccccggcgtggcgtactccgctggcatctgcatcggcacctgcagtggcatgtagcagccggtgcttcggagcagctccatcgcggagagcgcgccgccgccccggccgttggtccccattgggccaccggggttgcacacgctgctgctctccaggctcgggaacgccgggaactcccccggcgcctgcagcccgccgtggtgcgggaacgccaggttcaagtcctgcgcgccctcgtggaccagcttcgggttcttggacgccccgccgcccgtgctggccatggacatggacatggacgcgctcgtgacgacggaattcgccgtggaggcggacgcgggcgacgccgatgccgccgacgacgacgagcgcttgttcttgcgcgagccgccgccgacggggacgttgcggagcgagccgccctccgtccagtagcgccggcacgtcttgcagaagtagcgcggctgctggaggctgtagttgttgtagtagcagaacttggtgttcgtcgagttgcaccgcgggcagttgagcgccttctccttctgcggccgcgcccgccgctccgtgctacccgcccccgcgccacctgccaccggcggcgcgccgccgccgccgccacccctcagtgcgcccccagtcaccgacgacggcgccgtcgccgccggattcggattcgcgccggcggccgcgttcgctgccatcagcatctcctccatgggcttcaccagccctagcccctgatggtacacacatggtgcagcactccattagaacacaaacgatcaaagatcaaacaaacaccttgctaacttcacaccaactactactacagcaacaagctcgcaagaacaagcgagcacaaatggcatgtggttatgcagtgacagagagagagctagccatggcagcaagcagggtgtttagaatctttatggtgcaactaagaaccaagcaaaaggatacaaaggcagattagaggggggaggaaaggtgaaactggtaaaggggggagaggaaaggaaaaggtgataagcgaaagaaaggaaggaaagaaaagatgaaagagaaacacaccaccacacaaaacacaactttgtttgtgctgttgtagggttgcgcgcagtagtagtaccacagctgctcctgctgctgctgctactacacatcaccggggacatggctactcttttgatgcaagcggcaaggagacagaagaaaagaaggagaaaagctatgagaaaagaagataaggaaagggggggattagaaagaagaaaggcgatggtgtgtgtgtgtgtgctgctttcaaggatcaaaagggagagggattaaagccaccaagggcctcaccccccctcaaagcctatggaggagggagagagaagcgtgtgtgtgctactgatgatgatgaatactgaagcatagatctacacaaagaataagggttggcatataaagcgaagaacatcttccgagaggcagacaatcagaagaaaaaaaaagaaaagcatatgcaccgagaacaaggcgcagaaaggaagatgaacagcaacaagatcaggaagaagaagaagaagcacaagagcgaaattctgacagatgcagaatcaatcgatcgatcgatctttgcaaagcgatttttacctggtgccagtgggctgcatccatgcaagagggctctccaactgcgtctacctcgctgccccccaacaattcttgctcctccgggcacctgaggagacgaagcgcaacgaagacgaagacgacgagcgagctctacctcctgatgcagcagctggtggatttcttgagcagaagggagagagagaagagaatgtcctgtagttggggcagtgagtggaattatgcctcctccctatctctgcaccctcctctctctctctctctacccacatac
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| CDS seq | atggatgcagcccactggcaccaggggctagggctggtgaagcccatggaggagatgctgatggcagcgaacgcggccgccggcgcgaatccgaatccggcggcgacggcgccgtcgtcggtgactgggggcgcactgaggggtggcggcggcggcggcgcgccgccggtggcaggtggcgcgggggcgggtagcacggagcggcgggcgcggccgcagaaggagaaggcgctcaactgcccgcggtgcaactcgacgaacaccaagttctgctactacaacaactacagcctccagcagccgcgctacttctgcaagacgtgccggcgctactggacggagggcggctcgctccgcaacgtccccgtcggcggcggctcgcgcaagaacaagcgctcgtcgtcgtcggcggcatcggcgtcgcccgcgtccgcctccacggcgaattccgtcgtcacgagcgcgtccatgtccatgtccatggccagcacgggcggcggggcgtccaagaacccgaagctggtccacgagggcgcgcaggacttgaacctggcgttcccgcaccacggcgggctgcaggcgccgggggagttcccggcgttcccgagcctggagagcagcagcgtgtgcaaccccggtggcccaatggggaccaacggccggggcggcggcgcgctctccgcgatggagctgctccgaagcaccggctgctacatgccactgcaggtgccgatgcagatgccagcggagtacgccacgccggggttcgcgctcggtgagttccgcgcgccgccgccgccgccacagtcgtcccagagcttgctcgggttctcgttggacgcgcacggctcggtgggcgggccatccgccgcggggttcggctccagcgcggggttgcaaggcgtgccggagagcacgggcaggttgctgttcccgttcgaggacttgaagccgacggtcagctctggcactggcggtggaggcgcaagcggcggcggcgccggcgtagacggcggccatcagtttgatcacggcaaggagcagcaggccggtggcggaggaggcggcccaggcgggcacgacacgccggggttctggaacggcatgatcggcggcggcagtggcacttcttggtaa
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| Protein seq | MDAAHWHQGLGLVKPMEEMLMAANAAAGANPNPAATAPSSVTGGALRGGGGGGAPPVAGGAGAGSTERRARPQKEKALNCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSSSAASASPASASTANSVVTSASMSMSMASTGGGASKNPKLVHEGAQDLNLAFPHHGGLQAPGEFPAFPSLESSSVCNPGGPMGTNGRGGGALSAMELLRSTGCYMPLQVPMQMPAEYATPGFALGEFRAPPPPPQSSQSLLGFSLDAHGSVGGPSAAGFGSSAGLQGVPESTGRLLFPFEDLKPTVSSGTGGGGASGGGAGVDGGHQFDHGKEQQAGGGGGGPGGHDTPGFWNGMIGGGSGTSW |
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| Function | Dof zinc finger protein 1 [UniProtKB/Swiss-Prot:Q9SXG8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_04g0023350 | OsLiXu_04g0023350.01 | Chr04 | 30546526 | 30549767 | - | NAM | ||
| CDS seq | atggatgcagcccactggcaccaggggctagggctggtgaagcccatggaggagatgctgatggcagcgaacgcggccgccggcgcgaatccgaatccggcggcgacggcgccgtcgtcggtgactgggggcgcactgaggggtggcggcggcggcggcgcgccgccggtggcaggtggcgcgggggcgggtagcacggagcggcgggcgcggccgcagaaggagaaggcgctcaactgcccgcggtgcaactcgacgaacaccaagttctgctactacaacaactacagcctccagcagccgcgctacttctgcaagacgtgccggcgctactggacggagggcggctcgctccgcaacgtccccgtcggcggcggctcgcgcaagaacaagcgctcgtcgtcgtcggcggcatcggcgtcgcccgcgtccgcctccacggcgaattccgtcgtcacgagcgcgtccatgtccatgtccatggccagcacgggcggcggggcgtccaagaacccgaagctggtccacgagggcgcgcaggacttgaacctggcgttcccgcaccacggcgggctgcaggcgccgggggagttcccggcgttcccgagcctggagagcagcagcgtgtgcaaccccggtggcccaatggggaccaacggccggggcggcggcgcgctctccgcgatggagctgctccgaagcaccggctgctacatgccactgcaggtgccgatgcagatgccagcggagtacgccacgccggggttcgcgctcggtgagttccgcgcgccgccgccgccgccacagtcgtcccagagcttgctcgggttctcgttggacgcgcacggctcggtgggcgggccatccgccgcggggttcggctccagcgcggggttgcaaggcgtgccggagagcacgggcaggttgctgttcccgttcgaggacttgaagccgacggtcagctctggcactggcggtggaggcgcaagcggcggcggcgccggcgtagacggcggccatcagtttgatcacggcaaggagcagcaggccggtggcggaggaggcggcccaggcgggcacgacacgccggggttctggaacggcatgatcggcggcggcagtggcacttcttggtaa
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| Protein seq | MDAAHWHQGLGLVKPMEEMLMAANAAAGANPNPAATAPSSVTGGALRGGGGGGAPPVAGGAGAGSTERRARPQKEKALNCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSSSAASASPASASTANSVVTSASMSMSMASTGGGASKNPKLVHEGAQDLNLAFPHHGGLQAPGEFPAFPSLESSSVCNPGGPMGTNGRGGGALSAMELLRSTGCYMPLQVPMQMPAEYATPGFALGEFRAPPPPPQSSQSLLGFSLDAHGSVGGPSAAGFGSSAGLQGVPESTGRLLFPFEDLKPTVSSGTGGGGASGGGAGVDGGHQFDHGKEQQAGGGGGGPGGHDTPGFWNGMIGGGSGTSW
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.636622 | 0.837695 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0567800 | RBH | 0.010391 | 0.688928 | 2.560012 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g47990 | RBH | 0.075658 | 0.464035 | 0.558962 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0567800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0023360 | RBH | 0.043020 | 4.745998 | 1.302053 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0024100 | RBH | 0.000000 | 2.988183 | 0.307643 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0023830 | RBH | 0.0 | 5.122846 | 3.046533 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0023580 | RBH | 0.000000 | 0.064538 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0023720 | RBH | 0.000000 | 16.563635 | 3.556617 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0448200 | RBH | 3.0695115 | 31.4369715 | 6.898687 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0022490 | RBH | 0.041225 | 0.232685 | 0.386898 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0451900 | RBH | 4.0407945 | 28.80385 | 17.3992405 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0022990 | RBH | 0.069871 | 0.052083 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0022820 | RBH | 0.0 | 7.086635 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0022940 | RBH | 0.0 | 14.581248 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0028390 | RBH | 0.124713 | 0.970425 | 1.046731 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0023540 | RBH | 0.000000 | 2.904418 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G022780 | RBH | 0.034723 | 1.577091 | 0.718679 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0022660 | RBH | 0.0 | 6.182257 | 0.386539 |
