Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_04g0019510 | OGI:04076980 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr04:27388139-27393311 | ||||||||
| Gene Symbol | OsRFP | ||||||||||
| DNA seq | catcctctttatCcccaaatcttattagttcttcacaccaccaaatgagcacgtacacccatcagaatgtattcagtactcgttgccaaccctcggtataacttaacccactgcggctcaaagcctcaaatcaaataattaagcaagaagaatcggcaggtactatgtaccaacaatcaagctaacaactacgagagctaattaacacgatgaatgcttcagagtgcttcaccgtggtctcctcgccggagcttttggaaattgccaagatcagccggcggtgagctacctcgccgtcaccggggggcttgcccgatcaccggggccgtggcctttgccggccctgaggcgaagggagatggttctgggagtgctgtagcatctcaaccatggatggcgtctggtaggagtagatgacggtgctgctgtccgtcgagtcacctcgtgctgttgccctctgccacgagtgtgagctcagcccggacagcatgtaagccctccctgaagactcgtagagctggcgatttgccatcctctcctgcatctctcgcagctccgcgtcgagggacagcgacagacggtcaccgctccggcttgcgaatgactgtgacagtgtcctccggcaatcctcaagaatggccacggcctcagagagagcacccttctcggcagcagcccttgcacactctatggattcagcagcttgtatgcggttcctctcgcggtcaacctcaatggacacatgctcagatatgttggatgttgtcggccggttgatcttcacctcgtcaccttgaatcttgattgtctcacctgtcaccggatctctgtaggcacaagaaaccttcagtgctgaggtctgatgacgagattgtgggatgttcacggacagtaagatgtctctctcctcatcagcatacaggtgaccaatgtcgacggaaccgtttcgtccatctcttgccaccttacttgggtagctaccagatttgatggaagaaagttgaacaccaggatgaacacattccatgctaactcgcatctcttggatgacaatgctaagaagcccaccaatgcattgagcaaatgcatcttgcattacaccttcatcctcgataaaggaaaaggtgccaccagaagcttgagcaattgagtgcaaggaatccgagtcatggtctgctccaaatccgaaggcatgaagaggcaccgtatggcgagcatcatttataatggaagatgggacaagtgacttgtaatctggtgaagccccctgaacacttgaggaaatgttgtatgtatcttggccgtccgacagaagaatgatgctgcacactgaattcttgtaactgcggtcttcaatcaccttcatagctttcttcagtgcatcagcaatgtttgtaccgccgctagcaccaagtgagttaattgcctgcaatgcctgctgcctgccatgatgtgatattcgctgaaggtggaacagtcttctggcactagatgagaaagcaataacagaaagacgatcgcttggtccaaggtgctgaacaacaaaacccattgctcgctttaggagcgctagtttggtgcctgccatgctgccactaacatcaagcacagtaacgagatcaaccggagcacggtttcttgaagatccagctgagctttcattcgccaatttacctgtgccctggtctgggttagcactaggagccttcagatggatcagaatagcaaaatcatctttagatgaggactgcggtatggttgagaattctggatatgtgtttatctctgcagtcttagtagatcgaacattaagattgtcaaaaacttctggctgctgcaaaggttcatcatcattgaagtctgctggctcagaagtatgtgggcgacgaactcgctgatgatggTttggaacttggtggagaagagccatattggcatcttgttgggtcaatcgagctcggctaactccaattcttccatgcggaatgttagaagatagcgatcgattgaagggtatctctttccactttgcccgacaaattgggcagaaataattcccatgtttcacattagatgagatgcagtgaaaatggaacatatgagaacattcagctgtgaatagggcttgaccattcccatgccgcatggagtcaaagcatattgcacatttcctctgttgaaatacccAaaaaaaaaggtcaatacagttgtatttatataaaaaataattcagaaacaaaaaaacttcatcaatatttcgtttctatgttcatgaagacagatacaaagttatagcccctaccacacgaaattttctacttcctccgtttcacaatgtaagtcattctagcatttcccacattcatattgatgttaatgaatatatgtctagattcattaacatcaatatgaatgtgggaaatgctagaatgacttacattgtgaaacaaagggagtagaaaataaatatgaacctacaaatatgaatggttgaattcttttccttaaaatgaatggtatgtattcatcccgttgccgtaaaaatctcaaatatgacattgtaatacaacgcatagaagacaaactataaaaaattccaaacacagggtaaccataaaaaatgtagccaatgtagctgtctttgccaacatcactaaaataacaagtgaactatctcataggtttgcctagggatggagcttcttgaggactgaggccctctttgtttaggcttaggcttattggcttaggcttttaagtcaacttattggcttatatgatttataagctggtggaattaatgtcctaagtttagtggtggagtcatacatatacctcacataagccaaaaaagtttctccaacctagcttttggcttagggcaaagcccgatcagtattcttggtcaaaaaaaatactgttagagtggcttatggcttAaaaaaagccaattgaaaaggctgcttgtttgtttagatttagaattttcggcttataagttggcttataagcctaaacaaagagggcctgagtgactcgtggcgcctcctctagagaaatgattcgtcaagtgcttattttcaccactttaagttcacaacaaacactaaactatcctctcctttcaaagcttaggaaggaatttggaacttcacactaccctgttgggttaccaaaaccccagattaagaaaagtctaaattccaatgtaagctagcctttgaccggggattagccgcctatcaccaaccgccaaggccgacaaatgaacaaaatagccatccacgttttctgacatgccaaagaactttctatgtattaccaccaacatactgtaaacatcaacccacgggtgctatttcagttcttttgcaaattgtcaaaggtatctacttaaacatgcagaataatcagcaattaaaatgatatactttagaataatatggtatactaaaagaaaggtaaatactactaccaagacacagtcataatcaaactaggataacatacaaacttgtaagagtgtgacacatgcattggaggaaaactacttaaatttatgttgtattgaaaagcTtttattttgggaaaagttcgtgaggtacatcaccagataaatgtcaactcaatgaggtaatgcttatgaggctaactgtccatttggcaccaattaaagatagattgccaaatctagcacgctattctcatatagtcaaggcatattcaccacagaataagcaaaaatttcaccaatttgcattaattaatgatagctgttgtcaagttggaacgttggcagtaaagaagggaagctggtggtaggaggaaagagtagggatttgccacacgtgagcaccacgggcaggtgatgagcgacgaaacaaacttttccctttccttttcagggggcaggcaagtggaatatatgaatagtagatgcaacaggaaagtagtttgagttaagcgattcacacaaatagaaatgatactgaacagattaaagctacaccatatcatcaagatatatcaagaggcctcaaacacaccaaaaaagggaaatttgatttttttttctctgatgatagaaatatttccctgataattaactaaattcaaaaccaacagtaaacaaaaaccaggcaaaagtgcaaaactatgattttttttcctgcgatgatgacaatcctaataagcataatgaaaatgaccaactcgttctcttccagaaaaacactgaatttttcatctggaaaaaaaaaggaaaactactgtaatttgcataactcctaaaaaaaggcccgaactgtcaagtttgcaacaattaaattaccattttcccagtaatgacatactacagaagacccgaatcataccaaaacaatcttaaacagatgaaccgaagccaaatttcgtcctgatagacatctaatcctccatagcagccagccacgcgatgtgtaactcgctttatacacacaattcaaattggaatgactaaatgcagaactcgcccacatcccaaattcacaatccaacaaccgacctaaactaaccaagtttttttatatcaaaactcaaaaccgaattcagaaacggtcacagaaaaggggatcaccttagaggaggatcggctgctccccgacttggacctccgcaccacgccggggagcggcagcggcaccggaacgtccgacggcgccggcaccgactccggccccaccgtcaccgcggcctcgccccggcaccgcgcgccgctcgccgccgccggcagccgcctccgccgctcgctcgagcagtcctccctctccccctcctccgcctcgggcacgtgcacgcacaggccgagccccagcgccctcttcgccttcctccacgcgtcctccatcgccaccgccgcgcgccccttctccccctcctccctgtgacgactctccccttcctcttatacccaccaccagaaacgcgcgacgtacgcggcgaagccctacgacccgcgcgcgaggatgagggggagaggaggcggcgcggcgttggacgggagcggtggccgtcgcggcattggaggtggagcgtttggctgcggcttctatctcctcttctctctctctctctctctctctctctctctctggtttgacctcgtgggagagaagaagaaggggaaggaaacgta
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| CDS seq | atggaggacgcgtggaggaaggcgaagagggcgctggggctcggcctgtgcgtgcacgtgcccgaggcggaggagggggagagggaggactgctcgagcgagcggcggaggcggctgccggcggcggcgagcggcgcgcggtgccggggcgaggccgcggtgacggtggggccggagtcggtgccggcgccgtcggacgttccggtgccgctgccgctccccggcgtggtgcggaggtccaagtcggggagcagccgatcctcctctaagaggaaatgtgcaatatgctttgactccatgcggcatgggaatggtcaagccctattcacagctgaatgttctcatatgttccattttcactgcatctcatctaatgtgaaacatgggaattatttctgcccaatttgtcgggcaaagtggaaagagatacccttcaatcgatcgctatcttctaacattccgcatggaagaattggagttagccgagctcgattgacccaacaagatgccaatatggctcttctccaccaagttccaaAccatcatcagcgagttcgtcgcccacatacttctgagccagcagacttcaatgatgatgaacctttgcagcagccagaagtttttgacaatcttaatgttcgatctactaagactgcagagataaacacatatccagaattctcaaccataccgcagtcctcatctaaagatgattttgctattctgatccatctgaaggctcctagtgctaacccagaccagggcacaggtaaattggcgaatgaaagctcagctggatcttcaagaaaccgtgctccggttgatctcgttactgtgcttgatgttagtggcagcatggcaggcaccaaactagcgctcctaaagcgagcaatgggttttgttgttcagcaccttggaccaagcgatcgtctttctgttattgctttctcatctagtgccagaagactgttccaccttcagcgaatatcacatcatggcaggcagcaggcattgcaggcaattaactcacttggtgctagcggcggtacaaacattgctgatgcactgaagaaagctatgaaggtgattgaagaccgcagttacaagaattcagtgtgcagcatcattcttctgtcggacggccaagatacatacaacatttcctcaagtgttcagggggcttcaccagattacaagtcacttgtcccatcttccattataaatgatgctcgccatacggtgcctcttcatgccttcggatttggagcagaccatgactcggattccttgcactcaattgctcaagcttctggtggcaccttttcctttatcgaggatgaaggtgtaatgcaagatgcatttgctcaatgcattggtgggcttcttagcattgtcatccaagagatgcgagttagcatggaatgtgttcatcctggtgttcaactttcttccatcaaatctggtagctacccaagtaaggtggcaagagatggacgaaacggttccgtcgacattggtcacctgtatgctgatgaggagagagacatcttactgtccgtgaacatcccacaatctcgtcatcagacctcagcactgaaggtttcttgtgcctacagagatccggtgacaggtgagacaatcaagattcaaggtgacgaggtgaagatcaaccggccgacaacatccaacatatctgagcatgtgtccattgaggttgaccgcgagaggaaccgcatacaagctgctgaatccatagagtgtgcaagggctgctgccgagaagggtgctctctctgaggccgtggccattcttgaggattgccggaggacactgtcacagtcattcgcaagccggagcggtgaccgtctgtcgctgtccctcgacgcggagctgcgagagatgcaggagaggatggcaaatcgccagctctacgagtcttcagggagggcttacatgctgtccgggctgagctcacactcgtggcagagggcaacagcacgaggtgactcgacggacagcagcaccgtcatctactcctaccagacgccatccatggttgagatgctacagcactcccagaaccatctcccttcgcctcagggccggcaaaggccacggccccggtga
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| Protein seq | MEDAWRKAKRALGLGLCVHVPEAEEGEREDCSSERRRRLPAAASGARCRGEAAVTVGPESVPAPSDVPVPLPLPGVVRRSKSGSSRSSSKRKCAICFDSMRHGNGQALFTAECSHMFHFHCISSNVKHGNYFCPICRAKWKEIPFNRSLSSNIPHGRIGVSRARLTQQDANMALLHQVPNHHQRVRRPHTSEPADFNDDEPLQQPEVFDNLNVRSTKTAEINTYPEFSTIPQSSSKDDFAILIHLKAPSANPDQGTGKLANESSAGSSRNRAPVDLVTVLDVSGSMAGTKLALLKRAMGFVVQHLGPSDRLSVIAFSSSARRLFHLQRISHHGRQQALQAINSLGASGGTNIADALKKAMKVIEDRSYKNSVCSIILLSDGQDTYNISSSVQGASPDYKSLVPSSIINDARHTVPLHAFGFGADHDSDSLHSIAQASGGTFSFIEDEGVMQDAFAQCIGGLLSIVIQEMRVSMECVHPGVQLSSIKSGSYPSKVARDGRNGSVDIGHLYADEERDILLSVNIPQSRHQTSALKVSCAYRDPVTGETIKIQGDEVKINRPTTSNISEHVSIEVDRERNRIQAAESIECARAAAEKGALSEAVAILEDCRRTLSQSFASRSGDRLSLSLDAELREMQERMANRQLYESSGRAYMLSGLSSHSWQRATARGDSTDSSTVIYSYQTPSMVEMLQHSQNHLPSPQGRQRPRPR |
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| Function | E3 ubiquitin-protein ligase WAV3 [UniProtKB/Swiss-Prot:Q9LTA6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_04g0019510 | OsLiXu_04g0019510.01 | Chr04 | 27388251 | 27393311 | - | NAM | ||
| CDS seq | atggaggacgcgtggaggaaggcgaagagggcgctggggctcggcctgtgcgtgcacgtgcccgaggcggaggagggggagagggaggactgctcgagcgagcggcggaggcggctgccggcggcggcgagcggcgcgcggtgccggggcgaggccgcggtgacggtggggccggagtcggtgccggcgccgtcggacgttccggtgccgctgccgctccccggcgtggtgcggaggtccaagtcggggagcagccgatcctcctctaagaggaaatgtgcaatatgctttgactccatgcggcatgggaatggtcaagccctattcacagctgaatgttctcatatgttccattttcactgcatctcatctaatgtgaaacatgggaattatttctgcccaatttgtcgggcaaagtggaaagagatacccttcaatcgatcgctatcttctaacattccgcatggaagaattggagttagccgagctcgattgacccaacaagatgccaatatggctcttctccaccaagttccaaAccatcatcagcgagttcgtcgcccacatacttctgagccagcagacttcaatgatgatgaacctttgcagcagccagaagtttttgacaatcttaatgttcgatctactaagactgcagagataaacacatatccagaattctcaaccataccgcagtcctcatctaaagatgattttgctattctgatccatctgaaggctcctagtgctaacccagaccagggcacaggtaaattggcgaatgaaagctcagctggatcttcaagaaaccgtgctccggttgatctcgttactgtgcttgatgttagtggcagcatggcaggcaccaaactagcgctcctaaagcgagcaatgggttttgttgttcagcaccttggaccaagcgatcgtctttctgttattgctttctcatctagtgccagaagactgttccaccttcagcgaatatcacatcatggcaggcagcaggcattgcaggcaattaactcacttggtgctagcggcggtacaaacattgctgatgcactgaagaaagctatgaaggtgattgaagaccgcagttacaagaattcagtgtgcagcatcattcttctgtcggacggccaagatacatacaacatttcctcaagtgttcagggggcttcaccagattacaagtcacttgtcccatcttccattataaatgatgctcgccatacggtgcctcttcatgccttcggatttggagcagaccatgactcggattccttgcactcaattgctcaagcttctggtggcaccttttcctttatcgaggatgaaggtgtaatgcaagatgcatttgctcaatgcattggtgggcttcttagcattgtcatccaagagatgcgagttagcatggaatgtgttcatcctggtgttcaactttcttccatcaaatctggtagctacccaagtaaggtggcaagagatggacgaaacggttccgtcgacattggtcacctgtatgctgatgaggagagagacatcttactgtccgtgaacatcccacaatctcgtcatcagacctcagcactgaaggtttcttgtgcctacagagatccggtgacaggtgagacaatcaagattcaaggtgacgaggtgaagatcaaccggccgacaacatccaacatatctgagcatgtgtccattgaggttgaccgcgagaggaaccgcatacaagctgctgaatccatagagtgtgcaagggctgctgccgagaagggtgctctctctgaggccgtggccattcttgaggattgccggaggacactgtcacagtcattcgcaagccggagcggtgaccgtctgtcgctgtccctcgacgcggagctgcgagagatgcaggagaggatggcaaatcgccagctctacgagtcttcagggagggcttacatgctgtccgggctgagctcacactcgtggcagagggcaacagcacgaggtgactcgacggacagcagcaccgtcatctactcctaccagacgccatccatggttgagatgctacagcactcccagaaccatctcccttcgcctcagggccggcaaaggccacggccccggtga
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| Protein seq | MEDAWRKAKRALGLGLCVHVPEAEEGEREDCSSERRRRLPAAASGARCRGEAAVTVGPESVPAPSDVPVPLPLPGVVRRSKSGSSRSSSKRKCAICFDSMRHGNGQALFTAECSHMFHFHCISSNVKHGNYFCPICRAKWKEIPFNRSLSSNIPHGRIGVSRARLTQQDANMALLHQVPNHHQRVRRPHTSEPADFNDDEPLQQPEVFDNLNVRSTKTAEINTYPEFSTIPQSSSKDDFAILIHLKAPSANPDQGTGKLANESSAGSSRNRAPVDLVTVLDVSGSMAGTKLALLKRAMGFVVQHLGPSDRLSVIAFSSSARRLFHLQRISHHGRQQALQAINSLGASGGTNIADALKKAMKVIEDRSYKNSVCSIILLSDGQDTYNISSSVQGASPDYKSLVPSSIINDARHTVPLHAFGFGADHDSDSLHSIAQASGGTFSFIEDEGVMQDAFAQCIGGLLSIVIQEMRVSMECVHPGVQLSSIKSGSYPSKVARDGRNGSVDIGHLYADEERDILLSVNIPQSRHQTSALKVSCAYRDPVTGETIKIQGDEVKINRPTTSNISEHVSIEVDRERNRIQAAESIECARAAAEKGALSEAVAILEDCRRTLSQSFASRSGDRLSLSLDAELREMQERMANRQLYESSGRAYMLSGLSSHSWQRATARGDSTDSSTVIYSYQTPSMVEMLQHSQNHLPSPQGRQRPRPR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_04g0019510 | OsLiXu_04g0019510.02 | Chr04 | 27388139 | 27388400 | - | IsoSeq | ||
| CDS seq | atttccaaaagctccggcgaggagaccacggtgaagcactctgaagcattcatcgtgttaattagctctcgtagt |
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| Protein seq | ISKSSGEETTVKHSEAFIVLISSRS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.549003 | 1.366979 | 1.042838 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0508800 | RBH | 0.652541 | 0.630132 | 1.594890 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g42980 | RBH | 0.400318 | 0.407536 | 0.372444 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0508800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0019460 | RBH | 0.065964 | 16.805128 | 0.879385 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0020240 | RBH | 0.222318 | 4.049805 | 0.666153 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0019960 | RBH | 0.817411 | 18.862465 | 1.051288 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0019670 | RBH | 0.149109 | 0.286991 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0019880 | RBH | 1.456783 | 0.000000 | 3.345297 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0398900 | RBH | 2.619565 | 4.3655545 | 6.145228 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0018680 | RBH | 0.146406 | 0.705347 | 0.048522 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0398900 | RBH | 3.8638005 | 10.4777505 | 7.531944 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0019160 | RBH | 0.172285 | 0.042279 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0019010 | RBH | 0.190397 | 4.200754 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0019140 | RBH | 0.0 | 22.822742 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0025160 | RBH | 0.0 | 0.080897 | 0.373263 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0019680 | RBH | 0.134495 | 11.002827 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G018960 | RBH | 0.278752 | 4.006430 | 1.827027 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0018910 | RBH | 2.631428 | 13.571400 | 2.897029 |
