Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_04g0019200 | OGI:04076530 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr04:27167978-27169798 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | acaggcgcctgcgcgccctcaggaccaaaggccgaagccgctcgcgcgcgctcactcgatcgaccagtcgcgcgcgcgacgagagggagagcgacgcggcgccgaaccggctagctctcgtaggcacaaaagcccaaacacgttgcttctgcagtagctagtgtgccgtgcccgtgatcggagatggcaggctcgttgtctgccgcgcggtgcctcactctcttctgcttgctgggggcatgcattgcgcccggggcgcgtgctaacggccggcacagccggcgggacctcgacatcaacctcggcaacggcaacggcgggggcatcagcatcggcataggaggaagtggtggtggtggtggtggtggctccagtggtggctccagcggcggcggcggcgatctgcggccgtgcgacttcgagaacgagcggctgtacaaggcgtacaaggtgatccagaagttcaggaggacggtgacgtgcgacccgcagaacatcatctcctcctggagcggcgccgacctgtgcagcacctacaaggggttcttctgcgagcggccgcccaacatcaccgaccggaccatcgcctccgtcgacttcaacggctacaacctgcaggcgtcgtcgctgaaggagttcgtggacgccctcccggacctggcgctgttccacgccaacagcaacaacttcggcggcgccgtaccggacctcagccggctgcagtacttctacgagctcgacctgagcaacaacaagctgtcgcccgccacgttcccgacggacgtgctcaagctgaagaacgccaccttcgtcgacatccgcttcaacagcttctacggcgagctccccggcggcgtcttctgctcgttcccgcaggtgcaggccatcttcgtcaacaacaaccagttctccggcagcctgcccgacaacatcggcgactcgccggtgaactacctctccctcgccaacaacaacttcacgggggagatccccaagtcgatcgcgcgcatggccaacacgctcttcgaggtgctgttcctcaacaacaagctcagcggctgcctcccctacgagctcggcctgctcgccaaggccaccgtcatcgacgccggcaccaaccagctcaccggcccgatcccggcgtcgttcgcgtgcctgcgcaaggtggagcagctcaacctggcggacaacctcctctacggcgaggtgcccaacgcgctgtgcgagctcgccttctcgtggtcgggccgcctcaggaacctcacgctctccaacaactacttcacgtcgctcggctcctgctgctgggacctgatcaaggaggggaagctcaacgtcgaccgcaactgcatcccgtacgcgcccaaccagcggtcgcacgacgagtgcgccgccttcttccaccggaccaagacctccgcgtgcccctgcaacacctacgtgccgtgtggccacaacaagcactccgccgccggcgccggcagcgagcaggacacggcggcggcggaggaggacaagtacaggacttactcggcgctgcatccatgagcgcgagaaggaagggcaaaagcactgtgcttctcgtgaacgtgacacgattattgattgattcggttgctcttggctggttgtgttaattgatgtgttgtgtctacttttttgttacttttgtttcctttctcatccactgttacgtacggccaacttagtttcacatatatctgcatgtttaggtaaggtaatggagattttattttgatgaaccataggagcttgtaataattcagatcaccatgaaagatcagctttaaatttccctgc
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| CDS seq | atggcaggctcgttgtctgccgcgcggtgcctcactctcttctgcttgctgggggcatgcattgcgcccggggcgcgtgctaacggccggcacagccggcgggacctcgacatcaacctcggcaacggcaacggcgggggcatcagcatcggcataggaggaagtggtggtggtggtggtggtggctccagtggtggctccagcggcggcggcggcgatctgcggccgtgcgacttcgagaacgagcggctgtacaaggcgtacaaggtgatccagaagttcaggaggacggtgacgtgcgacccgcagaacatcatctcctcctggagcggcgccgacctgtgcagcacctacaaggggttcttctgcgagcggccgcccaacatcaccgaccggaccatcgcctccgtcgacttcaacggctacaacctgcaggcgtcgtcgctgaaggagttcgtggacgccctcccggacctggcgctgttccacgccaacagcaacaacttcggcggcgccgtaccggacctcagccggctgcagtacttctacgagctcgacctgagcaacaacaagctgtcgcccgccacgttcccgacggacgtgctcaagctgaagaacgccaccttcgtcgacatccgcttcaacagcttctacggcgagctccccggcggcgtcttctgctcgttcccgcaggtgcaggccatcttcgtcaacaacaaccagttctccggcagcctgcccgacaacatcggcgactcgccggtgaactacctctccctcgccaacaacaacttcacgggggagatccccaagtcgatcgcgcgcatggccaacacgctcttcgaggtgctgttcctcaacaacaagctcagcggctgcctcccctacgagctcggcctgctcgccaaggccaccgtcatcgacgccggcaccaaccagctcaccggcccgatcccggcgtcgttcgcgtgcctgcgcaaggtggagcagctcaacctggcggacaacctcctctacggcgaggtgcccaacgcgctgtgcgagctcgccttctcgtggtcgggccgcctcaggaacctcacgctctccaacaactacttcacgtcgctcggctcctgctgctgggacctgatcaaggaggggaagctcaacgtcgaccgcaactgcatcccgtacgcgcccaaccagcggtcgcacgacgagtgcgccgccttcttccaccggaccaagacctccgcgtgcccctgcaacacctacgtgccgtgtggccacaacaagcactccgccgccggcgccggcagcgagcaggacacggcggcggcggaggaggacaagtacaggacttactcggcgctgcatccatga
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| Protein seq | MAGSLSAARCLTLFCLLGACIAPGARANGRHSRRDLDINLGNGNGGGISIGIGGSGGGGGGGSSGGSSGGGGDLRPCDFENERLYKAYKVIQKFRRTVTCDPQNIISSWSGADLCSTYKGFFCERPPNITDRTIASVDFNGYNLQASSLKEFVDALPDLALFHANSNNFGGAVPDLSRLQYFYELDLSNNKLSPATFPTDVLKLKNATFVDIRFNSFYGELPGGVFCSFPQVQAIFVNNNQFSGSLPDNIGDSPVNYLSLANNNFTGEIPKSIARMANTLFEVLFLNNKLSGCLPYELGLLAKATVIDAGTNQLTGPIPASFACLRKVEQLNLADNLLYGEVPNALCELAFSWSGRLRNLTLSNNYFTSLGSCCWDLIKEGKLNVDRNCIPYAPNQRSHDECAAFFHRTKTSACPCNTYVPCGHNKHSAAGAGSEQDTAAAEEDKYRTYSALHP |
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| Function | Uncharacterized protein At4g06744 [UniProtKB/Swiss-Prot:Q8W3M4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_04g0019200 | OsLiXu_04g0019200.01 | Chr04 | 27167978 | 27169798 | + | NAM | ||
| CDS seq | atggcaggctcgttgtctgccgcgcggtgcctcactctcttctgcttgctgggggcatgcattgcgcccggggcgcgtgctaacggccggcacagccggcgggacctcgacatcaacctcggcaacggcaacggcgggggcatcagcatcggcataggaggaagtggtggtggtggtggtggtggctccagtggtggctccagcggcggcggcggcgatctgcggccgtgcgacttcgagaacgagcggctgtacaaggcgtacaaggtgatccagaagttcaggaggacggtgacgtgcgacccgcagaacatcatctcctcctggagcggcgccgacctgtgcagcacctacaaggggttcttctgcgagcggccgcccaacatcaccgaccggaccatcgcctccgtcgacttcaacggctacaacctgcaggcgtcgtcgctgaaggagttcgtggacgccctcccggacctggcgctgttccacgccaacagcaacaacttcggcggcgccgtaccggacctcagccggctgcagtacttctacgagctcgacctgagcaacaacaagctgtcgcccgccacgttcccgacggacgtgctcaagctgaagaacgccaccttcgtcgacatccgcttcaacagcttctacggcgagctccccggcggcgtcttctgctcgttcccgcaggtgcaggccatcttcgtcaacaacaaccagttctccggcagcctgcccgacaacatcggcgactcgccggtgaactacctctccctcgccaacaacaacttcacgggggagatccccaagtcgatcgcgcgcatggccaacacgctcttcgaggtgctgttcctcaacaacaagctcagcggctgcctcccctacgagctcggcctgctcgccaaggccaccgtcatcgacgccggcaccaaccagctcaccggcccgatcccggcgtcgttcgcgtgcctgcgcaaggtggagcagctcaacctggcggacaacctcctctacggcgaggtgcccaacgcgctgtgcgagctcgccttctcgtggtcgggccgcctcaggaacctcacgctctccaacaactacttcacgtcgctcggctcctgctgctgggacctgatcaaggaggggaagctcaacgtcgaccgcaactgcatcccgtacgcgcccaaccagcggtcgcacgacgagtgcgccgccttcttccaccggaccaagacctccgcgtgcccctgcaacacctacgtgccgtgtggccacaacaagcactccgccgccggcgccggcagcgagcaggacacggcggcggcggaggaggacaagtacaggacttactcggcgctgcatccatga
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| Protein seq | MAGSLSAARCLTLFCLLGACIAPGARANGRHSRRDLDINLGNGNGGGISIGIGGSGGGGGGGSSGGSSGGGGDLRPCDFENERLYKAYKVIQKFRRTVTCDPQNIISSWSGADLCSTYKGFFCERPPNITDRTIASVDFNGYNLQASSLKEFVDALPDLALFHANSNNFGGAVPDLSRLQYFYELDLSNNKLSPATFPTDVLKLKNATFVDIRFNSFYGELPGGVFCSFPQVQAIFVNNNQFSGSLPDNIGDSPVNYLSLANNNFTGEIPKSIARMANTLFEVLFLNNKLSGCLPYELGLLAKATVIDAGTNQLTGPIPASFACLRKVEQLNLADNLLYGEVPNALCELAFSWSGRLRNLTLSNNYFTSLGSCCWDLIKEGKLNVDRNCIPYAPNQRSHDECAAFFHRTKTSACPCNTYVPCGHNKHSAAGAGSEQDTAAAEEDKYRTYSALHP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 2.221266 | 1.229030 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0505200 | RBH | 0.0 | 0.450857 | 3.257955 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g42620 | RBH | 0.0 | 0.268293 | 0.774426 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0505200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0019150 | RBH | 0.0 | 27.908670 | 11.584051 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0019920 | RBH | 0.0 | 17.847733 | 1.224575 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0019640 | RBH | 0.231145 | 48.706318 | 14.493510 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0019370 | RBH | 0.0 | 1.975625 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0019570 | RBH | 0.0 | 20.144917 | 13.794530 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0395600 | RBH | 15.8390695 | 10.047532 | 6.5752895 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0018380 | RBH | 0.053104 | 2.196764 | 0.711144 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0395400 | RBH | 14.0046635 | 0.249037 | 11.155025 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0018860 | RBH | 0.0 | 0.309818 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0018710 | RBH | 0.0 | 17.710825 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0018830 | RBH | 0.0 | 50.141644 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0024690 | SBH | 0.035031 | 0.082412 | 0.021348 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0019370 | RBH | 0.0 | 22.701031 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G018660 | RBH | 0.041675 | 6.140765 | 11.094506 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0018600 | RBH | 0.0 | 20.960018 | 2.708213 |
