Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_04g0018320 | OGI:01024340 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr04:26586393-26589471 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttataaatataataaaacagaaattaagaaacttactccaatagaagagaagaaataatgttttttggattttgaggggtgagataaatgaaacaaatatcggcagaacacagatacaacaaaattagaaacttcatgtccaaaattaaatgatcctccaaaagaactgaatttgcagtgaacaccatcaatttcaactgcatgtcgtctacattcagaatacaaataaattcaaattacaaatcatacattgcaaatgaagattatcagaaaaaaaaagtacaaaatattacttactcttgatatctgcttgttgatagagtgcagatagcattataaatttgtctttcatattgtgagactgtgaagtttgatctttgaggagtataaggatctgtgcaatactttgcgggattgattacccttctaagatcgtgatgaattggttttgttccagaagtacttggattgaaattcttcatgttgcataacaaaactctttctggactagcaaaggatttgtagttttgtttctgagaatccaacagaattctattcattttattgtacatcatgttggttttgtttccaatatcagcacatttcttagagaatttcttttcaccaataaaaacaacatcaggtgaatcctaaaatttaacaaataaattaaatagtacagttagaaatatattaaaaaaaagaagatcaaaataactagaaataaaaaataataattattagcttataaccagaacagaaaaatgataaataaaagtaaggtacagggcatgaaatatttgaaatatcaatatgaaataacagttcagcaaataaactagtgatgttcaacagcaaacttacaaacttgagattataaactaaataaaaagaaatgaataagcagtgagaagaaaaaccttttggaataaaaaaagaaagaatgtatgttattaactagaactgaaatacattgtaacctacaagaattacagcaaaactatggagaacaacaatgcaaaaatggaattagaaaaatttttaaaacaccatttaatttcaaaaagggaacatcaatgaaaataaactatgagattattcatacttttatgatgtgacaacctttttcattttctttgttttcattgagagaagcattaggagaagttgaattttcaagtgtcaccatgtacatattatcctaaaatttcaaaatttaacaaatgaaagtttagtttgtatatacagaagaaataaagaaagaaattaatgtcagaattaccggactgtctgaacagattattgggctttcaacagcagcagcaaaagtttgagacaactttcttggagtgatctgcaagatttgtataaatcaatataatgttctaaaaaagtattccttatgaaatttaaagttacttcacaagtaccttatttcttaaaacaggatttggggagtatgaatcaggaataacttgatatgaatctacaagatgagcaggtgtaatttcttttttgaaatcatcattttcatgatggaggtcatcatcagaatcccagattttaaaagacggttgatcatgaaaaacttgattgtttcgagctacagcaataacataagaattaaaaacaaaaaatatggcaacaaaaagtaagaggaccatagtacagtgcactaaaatcacatgacaaaagaaatgaaatattacaataactcaatttttttgatgctagaacaattaaagatatacaagtaaaaacaaatgagattccattaaaaaaatttaccagtcaaggcagaatttttctctgtttcatctggtggattaataggaacatgaccttcaatgttaaataggcacaaacatcaataattcatatttaatttttttaaaaaaacagattaacaaatttagaaaaaaaataacctgttttgttcaactttctcattatttcatcaatgttgatatgtttaatctgcacaaataaaaaatgacagttaaaaactatcaacaattacagttctatatattcagattataatgattgaaataaaaatgaaaaaaaaaacctcttttgaagaattcaaaatggtagacttattcacaggattaaattcttcatttcgaattggcaacttatcatcatctagtactgttttactatttccctacaaaaaaataaaaggacaaaaaaatgcttaatgattcacatgactattagaataaaaaaaattgaaatgagaacagaaaacaatgtacctttcgagatgaggtgaaattgttatttttttgcacagcttgattaacatcatcattattttcttcaactggttcatgatctggttcaattccttaatttaaaatttatAaaaaaaatcaagacatatgaatggaaaaaaattaaaaataaaataaacaacaaaattcgtaaattaaaagtaataacctgaattttcatgtgcagcaggttgagtaggataattggaactgcaatcagctaacaacaacagaacatctataagaagtttcttagccttgtcttcaaagatttcatcttcttttccaaaatgattgcagagcaaatgacaaattttgtcttgaacatcacttggcaacagatcaccaacagaacttttgagcatatcagcaaatgaagatgagctattattcacctaaaaaattaaaacagaattttcaattccaatctaagaaaatttattagaacttgaaaagataaaaaaattgaaaaaaaaactgaacatttaccatttggtaacaagttgaagcaatatcattgactggtctttttccatacactccttcagatattttatcaaatttggaatagtccttaatcatagatcttttccaaactttaattcttggtgtatcaagtaatactttttgtgaaccaaagttgagaaaatccaggtaattaacctatgaaacattgaatatagaaattaaatgaatagtcatttagtacaaaatataaattagcataaatggagggaaaaaaatttaccgctaaatggaataaacaaccaccaaaagttttcgatttctcaatcttgcta
More
|
||||||||||
| CDS seq | atgattaaggactattccaaatttgataaaatatctgaaggagtgtatggaaaaagaccagtcaatgatattgcttcaacttgttaccaaatggtgaataatagctcatcttcatttgctgatatgctcaaaagttctgttggtgatctgttgccaagtgatgttcaagacaaaatttgtcatttgctctgcaatcattttggaaaagaagatgaaatctttgaagacaaggctaagaaacttcttatagatgttctgttgttgttagctgattgcagttccaattatcctactcaacctgctgcacatgaaaattcaggaattgaaccagatcatgaaccagttgaagaaaataatgatgatgttaatcaagctgtgcaaaaaaataacaatttcacctcatctcgaaagggaaatagtaaaacagtactagatgatgataagttgccaattcgaaatgaagaatttaatcctgtgaataagtctaccattttgaattcttcaaaagagattaaacatatcaacattgatgaaataatgagaaagttgaacaaaacaggtcatgttcctattaatccaccagatgaaacagagaaaaattctgccttgactgctcgaaacaatcaagtttttcatgatcaaccgtcttttaaaatctgggattctgatgatgacctccatcatgaaaatgatgatttcaaaaaagaaattacacctgctcatcttgtagattcatatcaagttattcctgattcatactccccaaatcctgttttaagaaataagatcactccaagaaagttgtctcaaacttttgctgctgctgttgaaagcccaataatctgttcagacagtccggataatatgtacatggtgacacttgaaaattcaacttctcctaatgcttctctcaatgaaaacaaagaaaatgaaaaaggttgtcacatcataaaagattcacctgatgttgtttttattggtgaaaagaaattctctaagaaatgtgctgatattggaaacaaaaccaacatgatgtacaataaaatgaatagaattctgttggattctcagaaacaaaactacaaatcctttgctagtccagaaagagttttgttatgcaacatgaagaatttcaatccaagtacttctggaacaaaaccaattcatcacgatcttagaagggtaatcaatcccgcaaagtattgcacagatccttatactcctcaaagatcaaacttcacagtctcacaatatgaaagacaaatttataatgctatctgcactctatcaacaagcagatatcaagaacgacatgcagttgaaattgatggtgttcactgcaaattcagttcttttggaggatcatttaattttggacatgaagtttctaattttgttgtatctgtgttctgccgatatttgtttcatttatctcacccctcaaaatccaaaaaacattatttcttctcttctattggagtaagtttcttaatttctgttttattatatttataa
More
|
||||||||||
| Protein seq | MIKDYSKFDKISEGVYGKRPVNDIASTCYQMVNNSSSSFADMLKSSVGDLLPSDVQDKICHLLCNHFGKEDEIFEDKAKKLLIDVLLLLADCSSNYPTQPAAHENSGIEPDHEPVEENNDDVNQAVQKNNNFTSSRKGNSKTVLDDDKLPIRNEEFNPVNKSTILNSSKEIKHINIDEIMRKLNKTGHVPINPPDETEKNSALTARNNQVFHDQPSFKIWDSDDDLHHENDDFKKEITPAHLVDSYQVIPDSYSPNPVLRNKITPRKLSQTFAAAVESPIICSDSPDNMYMVTLENSTSPNASLNENKENEKGCHIIKDSPDVVFIGEKKFSKKCADIGNKTNMMYNKMNRILLDSQKQNYKSFASPERVLLCNMKNFNPSTSGTKPIHHDLRRVINPAKYCTDPYTPQRSNFTVSQYERQIYNAICTLSTSRYQERHAVEIDGVHCKFSSFGGSFNFGHEVSNFVVSVFCRYLFHLSHPSKSKKHYFFSSIGVSFLISVLLYL |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_04g0018320 | OsLiXu_04g0018320.01 | Chr04 | 26586393 | 26589471 | - | NAM | ||
| CDS seq | atgattaaggactattccaaatttgataaaatatctgaaggagtgtatggaaaaagaccagtcaatgatattgcttcaacttgttaccaaatggtgaataatagctcatcttcatttgctgatatgctcaaaagttctgttggtgatctgttgccaagtgatgttcaagacaaaatttgtcatttgctctgcaatcattttggaaaagaagatgaaatctttgaagacaaggctaagaaacttcttatagatgttctgttgttgttagctgattgcagttccaattatcctactcaacctgctgcacatgaaaattcaggaattgaaccagatcatgaaccagttgaagaaaataatgatgatgttaatcaagctgtgcaaaaaaataacaatttcacctcatctcgaaagggaaatagtaaaacagtactagatgatgataagttgccaattcgaaatgaagaatttaatcctgtgaataagtctaccattttgaattcttcaaaagagattaaacatatcaacattgatgaaataatgagaaagttgaacaaaacaggtcatgttcctattaatccaccagatgaaacagagaaaaattctgccttgactgctcgaaacaatcaagtttttcatgatcaaccgtcttttaaaatctgggattctgatgatgacctccatcatgaaaatgatgatttcaaaaaagaaattacacctgctcatcttgtagattcatatcaagttattcctgattcatactccccaaatcctgttttaagaaataagatcactccaagaaagttgtctcaaacttttgctgctgctgttgaaagcccaataatctgttcagacagtccggataatatgtacatggtgacacttgaaaattcaacttctcctaatgcttctctcaatgaaaacaaagaaaatgaaaaaggttgtcacatcataaaagattcacctgatgttgtttttattggtgaaaagaaattctctaagaaatgtgctgatattggaaacaaaaccaacatgatgtacaataaaatgaatagaattctgttggattctcagaaacaaaactacaaatcctttgctagtccagaaagagttttgttatgcaacatgaagaatttcaatccaagtacttctggaacaaaaccaattcatcacgatcttagaagggtaatcaatcccgcaaagtattgcacagatccttatactcctcaaagatcaaacttcacagtctcacaatatgaaagacaaatttataatgctatctgcactctatcaacaagcagatatcaagaacgacatgcagttgaaattgatggtgttcactgcaaattcagttcttttggaggatcatttaattttggacatgaagtttctaattttgttgtatctgtgttctgccgatatttgtttcatttatctcacccctcaaaatccaaaaaacattatttcttctcttctattggagtaagtttcttaatttctgttttattatatttataa
More
|
|||||||
| Protein seq | MIKDYSKFDKISEGVYGKRPVNDIASTCYQMVNNSSSSFADMLKSSVGDLLPSDVQDKICHLLCNHFGKEDEIFEDKAKKLLIDVLLLLADCSSNYPTQPAAHENSGIEPDHEPVEENNDDVNQAVQKNNNFTSSRKGNSKTVLDDDKLPIRNEEFNPVNKSTILNSSKEIKHINIDEIMRKLNKTGHVPINPPDETEKNSALTARNNQVFHDQPSFKIWDSDDDLHHENDDFKKEITPAHLVDSYQVIPDSYSPNPVLRNKITPRKLSQTFAAAVESPIICSDSPDNMYMVTLENSTSPNASLNENKENEKGCHIIKDSPDVVFIGEKKFSKKCADIGNKTNMMYNKMNRILLDSQKQNYKSFASPERVLLCNMKNFNPSTSGTKPIHHDLRRVINPAKYCTDPYTPQRSNFTVSQYERQIYNAICTLSTSRYQERHAVEIDGVHCKFSSFGGSFNFGHEVSNFVVSVFCRYLFHLSHPSKSKKHYFFSSIGVSFLISVLLYL
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g44640 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0016520 | SBH | 0.027271 | 0.0 | 0.412896 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0016350 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0016390 | SBH | 0.0 | 0.324623 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0016370 | SBH | 0.0 | 0.023775 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0018690 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0385000 | RBH | 14.158611 | 1.586175 | 2.693767 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0017470 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0384900 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0017970 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0017820 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0017910 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0018480 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
