Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_04g0018180 | OGI:04074610 | 14/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr04:26450564-26453972 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | agtattagaatattattggtggattatttcgtgattgtaggaacctgcagagcaccttcctggtttccctcatgaaatttcagtttatgaacctgctaacttgttcttcaaaaacagatgacactgcattctcaactatctatggttcagagaacaataggtttgagtggtctggactctggagcactgtaaaataacagaggtactgtaatattcaagcttttagctgttcatcactttccaatatacataattgctctgttaaccagtttttgttttcaagcagaacagttttcagctgaactctcctttctctaccatactggcttgatccatatttagatctttggtatttgtgttgttgatcagcatgcttgtccatagaagcattgagaaagatgtatttgagccacttgtgatgcgtatttctgaaattgcgcaacactattttgggacagtgggctcatctgaaactggtgagaagggtcctacagtgcctgaatttccagagaagatcaaatgggaagtgcaacatctcgaagaattgtttgagggcattaaagaagacaaggaggaggtctatgagggttttaagtctgttagccttgcaatctccgagtggcagagaagattggctatagcataccaaaatgcagctagagatcctcgaccttttgagggaatgaaatgggcaatggagtatcatgagatgtgggttgaagacaataatataataggagctggtgatgagatattggattttgatgaacatgagctttttgaatcacttagatatgtcaagactgcacaaggtggttcagaagctcatctcctggaaagtatcaagagtgggatgcagtgcataaagaatgtgttagccaccattcgatcaagaaaggaagcagacaacaggagctggtgcattgtggaacaggtcttctccccgctactgaaacttttgaaaactatcaatcatctagtatcagaagcggctgcccgcaacaacaagtctgagaactataagatccttgtcaagatcgatgctgaagtcaactgcttacaggatgcactagatttgattgatagaaataagaatgaggtttatgagaacttcagattaatagaagatctcatactaccattattaacattccttaaggccacatacaatgatcaatcagaatctttgagcttcctagatgcagtcaaacacggagtgaattacttggaaggtgtacttgacaagattgagcagaagcagcgggatggaaatgataatttccacattgtcaaagcagccttctcaccattgttgacatgcatgtacaccttcaggcgcatctcgttggaaaccttagcccatgaagataaatcagatgcttttattctgttggacaggatcagagatgatttgtcacagctcaaagatgtacttcagatggttcaagagaaagagaacggaatatacagtaactttgatgcaattgaagaacatattgatgagatttatgacggacatatgaatgttgaaggttccttaaaacttaaccagatgggtggtctgcgagacaagctccagttgattcatgaagagataacaaatatacggggaaaggtggatgactctttcaaggtccaggaggtctcatgccatgtcatgcgcatggctgcagcacatgaagcttcatcttctcatcagttgtcagcatcaaataccttctgcattaccatggaaagtgcgcagatgtggcagctcaaagttataattgatgaactagagacaagattgagacactgccttctatgccttgctgtgttcccagtggatgccatcatcaagaagagactgttaattcactggtggattggagaatgttttgtaacttcggtttctgaaggcaagagcttctttaataaattgctgctgtccaatgggttcattacgccagtaaagaaataccactgtgacaaagtccactcgtgcaaggtgcaaccttggatccgtgggctactgattgaagctgcaaagagcaaagcatttgttgagctcagttcagatggcagctccaggaatgactttaccaggacccgccgtgcatgcttgcatgctggaaagatccttacaaacttccatcctgatgttttgaggatttacaatatcaagcaacagtatgtagagttaaacaagacatggttttctgaaaagaaccgtttgaccactttgcagttaggacaatggcacgatgcaagttatgaccctcgggcacatcacgttgagattaacaatgccaagttcctaaagcaggtcaaatcctgcaagcagttgaagtacctgagtttgagaggcatatcaagaattgaggcccttccgaactcaattggaaagctctcaagacttgtcattcttgatctcaaagcgtgccataatctagaggatcttcctaaagaaatagtaaaactagtgaagctggagtacttggacgtttctgattgttacctgctctcaggtatgcctaaaggactaggcaagcTttttcaacttgaagttctgaagggatttgttctatcaaacgccaagagcaaagatctatgccatctcaatgaacttgtcatgctaaaaaagttacgaaagctgagcattagaattggttatagcatagatagcggtcagtttgcgaattttggtgagctctgtgctctccggtcgcttacacttatttggggggcacacccaatatctacacacgggagttctccaagtcatgctgctcctcatgcaatgccttgtgttctccccttaggtcttgagaagctggagctccgttgttttccccttgtagaattgcctcactgggttagtcctgaaaagctgagaaaattgaagaagctctacatcagcggaggtaacatcagtgacctgggtgatttgaagtcctgggaggtgactgtacttcggctaaggttcctcaaacatatgaactattcatggactgccctgcatgattcattcaggaaactcgatgttttggaggcacatgaatgtgaaaatctacagccctggccttcctgcggaaaagggttatggcggaaagaaccgaatggaacgattgcacctgtgttgacctgaagtattgagctgggtccaatagggtgcagaattactgcctggaaatgggaatattgaaggatatatttgatcagcagtatatctgaattctgaagacattgccaatcactgtctggtaagatggcaattggcaattgtcctgcagcatatataaagatattaaacttctaactgtgttacatttctaagcacaaatccttgcatactttcacattgtcgaatgtttatagacttattgggcaacataagtcaaaaaataaaatgtactcgtcgattggttgc
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| CDS seq | atgcttgtccatagaagcattgagaaagatgtatttgagccacttgtgatgcgtatttctgaaattgcgcaacactattttgggacagtgggctcatctgaaactggtgagaagggtcctacagtgcctgaatttccagagaagatcaaatgggaagtgcaacatctcgaagaattgtttgagggcattaaagaagacaaggaggaggtctatgagggttttaagtctgttagccttgcaatctccgagtggcagagaagattggctatagcataccaaaatgcagctagagatcctcgaccttttgagggaatgaaatgggcaatggagtatcatgagatgtgggttgaagacaataatataataggagctggtgatgagatattggattttgatgaacatgagctttttgaatcacttagatatgtcaagactgcacaaggtggttcagaagctcatctcctggaaagtatcaagagtgggatgcagtgcataaagaatgtgttagccaccattcgatcaagaaaggaagcagacaacaggagctggtgcattgtggaacaggtcttctccccgctactgaaacttttgaaaactatcaatcatctagtatcagaagcggctgcccgcaacaacaagtctgagaactataagatccttgtcaagatcgatgctgaagtcaactgcttacaggatgcactagatttgattgatagaaataagaatgaggtttatgagaacttcagattaatagaagatctcatactaccattattaacattccttaaggccacatacaatgatcaatcagaatctttgagcttcctagatgcagtcaaacacggagtgaattacttggaaggtgtacttgacaagattgagcagaagcagcgggatggaaatgataatttccacattgtcaaagcagccttctcaccattgttgacatgcatgtacaccttcaggcgcatctcgttggaaaccttagcccatgaagataaatcagatgcttttattctgttggacaggatcagagatgatttgtcacagctcaaagatgtacttcagatggttcaagagaaagagaacggaatatacagtaactttgatgcaattgaagaacatattgatgagatttatgacggacatatgaatgttgaaggttccttaaaacttaaccagatgggtggtctgcgagacaagctccagttgattcatgaagagataacaaatatacggggaaaggtggatgactctttcaaggtccaggagttaggacaatggcacgatgcaagttatgaccctcgggcacatcacgttgagattaacaatgccaagttcctaaagcaggtcaaatcctgcaagcagttgaagtacctgagtttgagaggcatatcaagaattgaggcccttccgaactcaattggaaagctctcaagacttgtcattcttgatctcaaagcgtgccataatctagaggatcttcctaaagaaatagtaaaactagtgaagctggagtacttggacgtttctgattgttacctgctctcaggtatgcctaaaggactaggcaagcTttttcaacttgaagttctgaagggatttgttctatcaaacgccaagagcaaagatctatgccatctcaatgaacttgtcatgctaaaaaagttacgaaagctgagcattagaattggttatagcatagatagcggtcagtttgcgaattttggtgagctctgtgctctccggtcgcttacacttatttggggggcacacccaatatctacacacgggagttctccaagtcatgctgctcctcatgcaatgccttgtgttctccccttaggtcttgagaagctggagctccgttgttttccccttgtagaattgcctcactgggttagtcctgaaaagctgagaaaattgaagaagctctacatcagcggaggtaacatcagtgacctgggtgatttgaagtcctgggaggtgactgtacttcggctaaggttcctcaaacatatgaactattcatggactgccctgcatgattcattcaggaaactcgatgttttggaggcacatgaatgtgaaaatctacagccctggccttcctgcggaaaagggttatggcggaaagaaccgaatggaacgattgcacctgtgttgacctga
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| Protein seq | MLVHRSIEKDVFEPLVMRISEIAQHYFGTVGSSETGEKGPTVPEFPEKIKWEVQHLEELFEGIKEDKEEVYEGFKSVSLAISEWQRRLAIAYQNAARDPRPFEGMKWAMEYHEMWVEDNNIIGAGDEILDFDEHELFESLRYVKTAQGGSEAHLLESIKSGMQCIKNVLATIRSRKEADNRSWCIVEQVFSPLLKLLKTINHLVSEAAARNNKSENYKILVKIDAEVNCLQDALDLIDRNKNEVYENFRLIEDLILPLLTFLKATYNDQSESLSFLDAVKHGVNYLEGVLDKIEQKQRDGNDNFHIVKAAFSPLLTCMYTFRRISLETLAHEDKSDAFILLDRIRDDLSQLKDVLQMVQEKENGIYSNFDAIEEHIDEIYDGHMNVEGSLKLNQMGGLRDKLQLIHEEITNIRGKVDDSFKVQELGQWHDASYDPRAHHVEINNAKFLKQVKSCKQLKYLSLRGISRIEALPNSIGKLSRLVILDLKACHNLEDLPKEIVKLVKLEYLDVSDCYLLSGMPKGLGKLFQLEVLKGFVLSNAKSKDLCHLNELVMLKKLRKLSIRIGYSIDSGQFANFGELCALRSLTLIWGAHPISTHGSSPSHAAPHAMPCVLPLGLEKLELRCFPLVELPHWVSPEKLRKLKKLYISGGNISDLGDLKSWEVTVLRLRFLKHMNYSWTALHDSFRKLDVLEAHECENLQPWPSCGKGLWRKEPNGTIAPVLT |
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| Function | Disease resistance RPP13-like protein 4 [UniProtKB/Swiss-Prot:Q38834] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_04g0018180 | OsLiXu_04g0018180.01 | Chr04 | 26450564 | 26453972 | + | NAM | ||
| CDS seq | atgcttgtccatagaagcattgagaaagatgtatttgagccacttgtgatgcgtatttctgaaattgcgcaacactattttgggacagtgggctcatctgaaactggtgagaagggtcctacagtgcctgaatttccagagaagatcaaatgggaagtgcaacatctcgaagaattgtttgagggcattaaagaagacaaggaggaggtctatgagggttttaagtctgttagccttgcaatctccgagtggcagagaagattggctatagcataccaaaatgcagctagagatcctcgaccttttgagggaatgaaatgggcaatggagtatcatgagatgtgggttgaagacaataatataataggagctggtgatgagatattggattttgatgaacatgagctttttgaatcacttagatatgtcaagactgcacaaggtggttcagaagctcatctcctggaaagtatcaagagtgggatgcagtgcataaagaatgtgttagccaccattcgatcaagaaaggaagcagacaacaggagctggtgcattgtggaacaggtcttctccccgctactgaaacttttgaaaactatcaatcatctagtatcagaagcggctgcccgcaacaacaagtctgagaactataagatccttgtcaagatcgatgctgaagtcaactgcttacaggatgcactagatttgattgatagaaataagaatgaggtttatgagaacttcagattaatagaagatctcatactaccattattaacattccttaaggccacatacaatgatcaatcagaatctttgagcttcctagatgcagtcaaacacggagtgaattacttggaaggtgtacttgacaagattgagcagaagcagcgggatggaaatgataatttccacattgtcaaagcagccttctcaccattgttgacatgcatgtacaccttcaggcgcatctcgttggaaaccttagcccatgaagataaatcagatgcttttattctgttggacaggatcagagatgatttgtcacagctcaaagatgtacttcagatggttcaagagaaagagaacggaatatacagtaactttgatgcaattgaagaacatattgatgagatttatgacggacatatgaatgttgaaggttccttaaaacttaaccagatgggtggtctgcgagacaagctccagttgattcatgaagagataacaaatatacggggaaaggtggatgactctttcaaggtccaggagttaggacaatggcacgatgcaagttatgaccctcgggcacatcacgttgagattaacaatgccaagttcctaaagcaggtcaaatcctgcaagcagttgaagtacctgagtttgagaggcatatcaagaattgaggcccttccgaactcaattggaaagctctcaagacttgtcattcttgatctcaaagcgtgccataatctagaggatcttcctaaagaaatagtaaaactagtgaagctggagtacttggacgtttctgattgttacctgctctcaggtatgcctaaaggactaggcaagcTttttcaacttgaagttctgaagggatttgttctatcaaacgccaagagcaaagatctatgccatctcaatgaacttgtcatgctaaaaaagttacgaaagctgagcattagaattggttatagcatagatagcggtcagtttgcgaattttggtgagctctgtgctctccggtcgcttacacttatttggggggcacacccaatatctacacacgggagttctccaagtcatgctgctcctcatgcaatgccttgtgttctccccttaggtcttgagaagctggagctccgttgttttccccttgtagaattgcctcactgggttagtcctgaaaagctgagaaaattgaagaagctctacatcagcggaggtaacatcagtgacctgggtgatttgaagtcctgggaggtgactgtacttcggctaaggttcctcaaacatatgaactattcatggactgccctgcatgattcattcaggaaactcgatgttttggaggcacatgaatgtgaaaatctacagccctggccttcctgcggaaaagggttatggcggaaagaaccgaatggaacgattgcacctgtgttgacctga
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| Protein seq | MLVHRSIEKDVFEPLVMRISEIAQHYFGTVGSSETGEKGPTVPEFPEKIKWEVQHLEELFEGIKEDKEEVYEGFKSVSLAISEWQRRLAIAYQNAARDPRPFEGMKWAMEYHEMWVEDNNIIGAGDEILDFDEHELFESLRYVKTAQGGSEAHLLESIKSGMQCIKNVLATIRSRKEADNRSWCIVEQVFSPLLKLLKTINHLVSEAAARNNKSENYKILVKIDAEVNCLQDALDLIDRNKNEVYENFRLIEDLILPLLTFLKATYNDQSESLSFLDAVKHGVNYLEGVLDKIEQKQRDGNDNFHIVKAAFSPLLTCMYTFRRISLETLAHEDKSDAFILLDRIRDDLSQLKDVLQMVQEKENGIYSNFDAIEEHIDEIYDGHMNVEGSLKLNQMGGLRDKLQLIHEEITNIRGKVDDSFKVQELGQWHDASYDPRAHHVEINNAKFLKQVKSCKQLKYLSLRGISRIEALPNSIGKLSRLVILDLKACHNLEDLPKEIVKLVKLEYLDVSDCYLLSGMPKGLGKLFQLEVLKGFVLSNAKSKDLCHLNELVMLKKLRKLSIRIGYSIDSGQFANFGELCALRSLTLIWGAHPISTHGSSPSHAAPHAMPCVLPLGLEKLELRCFPLVELPHWVSPEKLRKLKKLYISGGNISDLGDLKSWEVTVLRLRFLKHMNYSWTALHDSFRKLDVLEAHECENLQPWPSCGKGLWRKEPNGTIAPVLT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.084018 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0491100 | RBH | 0.220280 | 0.150602 | 0.806992 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g41380 | RBH | 0.137624 | 0.093580 | 0.191920 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0491100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0018140 | RBH | 0.0 | 1.029877 | 0.248903 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0018920 | RBH | 0.0 | 0.000000 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0018630 | RBH | 0.0 | 0.0 | 1.036819 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0018340 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0018550 | RBH | 0.0 | 4.872821 | 3.151776 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0383600 | SBH | 0.2310065 | 2.950411 | 0.677213 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0017340 | RBH | 0.0 | 0.168343 | 0.067470 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0383200 | SBH | 0.182621 | 5.256165 | 3.1113185 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0017840 | RBH | 0.0 | 0.088693 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0017680 | RBH | 0.164824 | 4.732847 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0017750 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0020540 | RBH | 0.225186 | 0.074579 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0018340 | RBH | 0.000000 | 0.490564 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G017630 | RBH | 0.0 | 0.282164 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0017570 | RBH | 0.000000 | 2.789047 | 0.645522 |
