Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_04g0018170 | OGI:04074660 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr04:26447071-26450199 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcactctagactaatctcgagattcgacagattattcaaactcttgggtatgtgcagctttggacaactagatatgtgcaaggatctcagagaggtgaaattcttcaaccattctgggaaagtttccaaatttgtgcactctgttattgtcaaggttcggaggaatgacaaatgctgcatgccatggggcaaagaaatcaattctgtgcaccttgaaatatgaagttcctcaatacctcgaagttctctcagcccctcacattctgaacactctaatagcccgtcacacagggaaaccgacagagatttcaggttttgagagaaaccttccagtgctcctctagatccaatcaatttatcgttgttcaacaacatgattaagcttttgacagctgggagtttcacatgcactgctctaaattttgggcattgggtgatagtcaattcttgaaggtttgggaaaattgcttctctctgtgatggaagccatatttctaggttgcgcatgtgaaagaacgagagtttctccagtgaggcgaatgtgccatcatccccatagaattcgtcacctacacgtgtgacagcatttattccacttaattcaacaatcttgagaagaggtaattgccccagtggaggtaggcattcacatgccaaattaactagcttgatctcagtaagtgattttaagtatggtggcatgcttgttatccatgatggaagcttctttgctggacatgagaaaatgcataacactttcaaaccacggtttggcttaagaagttcaagtatttgctgtgcttttgaactaatcataggatctgtacagcttcctgtccaacttaatgccaaagacacaagcctatttttcttttgcaggattacattccttgcgtcatcaaaagaagcattttccatattgcaaatactgagttccttcaaactaactaagggacacaactctgagatggtgtgctcgtgattttccgctgcaatgtaccttggcaatatctcgaggtttctaagttggttcatctgacagggcatttgagttagtaaaggacattcaagaacgtttaggtaggcaagacttttcaagtttttcatgcttcttggtaaaatagcaaggtaatgacagccttcaaggtttaggatttgaagattcacaagattgcttacagattcatgcaaatgaagaagtttttcacaatgagatagatccaaaacttgcaaagcttgcatctttccaactgattctggcaattcagcaatctcagttcgtgaaaggttgaaattcttcaagaactgaaggttgcatattgaatctggtataatctctatatcattgtgggagagattaagataggctaattttttaagcataccaattaacttaggtactcttttgatcctgcaagattgcatgtgtagtacacgcatatctatcagacatttgcagaattcttctgggatgtctgtgattgagcacttcttgtcagacaaaagcatcttttcatctctgagcaagattagtgtcctcagatttcccatttcaaacaattctgttggaagctcagttgtctttgagtcaacgagtaaggagaggcaccgagcacttttttttgcattttctacaggccaaactaattccttcctggcatctattgctaagtgaaatcccctgctaatcatttgtgcaagaagttgcatcccagggtgcatcttgtaaatagcgtatgctttgtgtcgaggtttctgcattacatcatagtagtgttctgtcattatcttggagaagtacatatgcatgtcagatttgctgcttgacagttttatgagatcatcagcaacaaacatgccagtcaactgttcgggagtaaagctatgaactgggaacagtgaacagtatagaaagcattgctggatattggaagggagttgttgataactgacgtaagttgcatccaacagaagtgggtctgcgtagaaaactaggtcaaatctgctcaggacatgctgccatgcaacttcagtcttccgtatgctcttgagcttgtttgatgcactgagtagtagtgagggcacgccacaacatgtgtcagcgatcatttttcttattggaattagccgcggcggcaactctgcagaattttgcatccattgtgtgagaaggtttgaagaatcgattggtaagagacgcttcaaagtgtatggtctgagagagttggtcattgttacaacatctggaacgcgactagtcacaatcatcttgcttcctgacttggcactctcaaggacctcaatcaatagcttccatttctgcagattctgaccccaaacatcatccaagacaataagaaactttcgcccgcatagtcgctgcttgacaaggcactgaaggctctcagagtccactgtgttgcattgcctggtgtttagaaattctgctagtctgctcaatattatcatatcatcgaaactactagacaccacgacccaaattcggtcatcaccaaatgtcttgacagcccatggatgtgagaacactaactgagcaagggttgtcttcccaattccagccattccggttatgggaagcactgacaggccagctttgccatgatcagcttgcatcattgttagaacatcatccacttccttttcccttcctagtatcccttctggtcgtatgctatgtgctccttggcaaaccataggtgtgctgatatctctatgtttggctgggaatcggattctatatgtctgtgcatagcattcttgcaattcaactattgattgtttgatcttatggacaatgcggcgtcgaaaagggagccttctaaggatgaatgagctgtgtacctgaattgagaggacccttgtttttgttagatagcaagagaccttgttgagcatgtcatcaatgtcaagtgtgagagaccagagcctctgtagaagctggtggtactgctcgttgttggcgctgatcatgagaagtgcactgtcgttgatgccactgatcttcctatggaccatcctgaaaagtgtatgcaggtcctggagcaggctttcaatgcaaagcagcttaccctgctcctgcgcagactcggcgtaaagcttttccaccat
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| CDS seq | atggtggaaaagctttacgccgagtctgcgcaggagcagggtaagctgctttgcattgaaagcctgctccaggacctgcatacacttttcaggatggtccataggaagatcagtggcatcaacgacagtgcacttctcatgatcagcgccaacaacgagcagtaccaccagcttctacagaggctctggtctctcacacttgacattgatgacatgctcaacaaggtctcttgctatctaacaaaaacaagggtcctctcaattcaggtacacagctcattcatccttagaaggctcccttttcgacgccgcattgtccataagatcaaacaatcaatagttgaattgcaagaatgctatgcacagacatatagaatccgattcccagccaaacatagagatatcagcacacctatggtttgccaaggagcacatagcatacgaccagaagggatactaggaagggaaaaggaagtggatgatgttctaacaatgatgcaagctgatcatggcaaagctggcctgtcagtgcttcccataaccggaatggctggaattgggaagacaacccttgctcagttagtgttctcacatccatgggctgtcaagacatttggtgatgaccgaatttgggtcgtggtgtctagtagtttcgatgatatgataatattgagcagactagcagaatttctaaacaccaggcaatgcaacacagtggactctgagagccttcagtgccttgtcaagcagcgactatgcgggcgaaagtttcttattgtcttggatgatgtttggggtcagaatctgcagaaatggaagctattgattgaggtccttgagagtgccaagtcaggaagcaagatgattgtgactagtcgcgttccagatgttgtaacaatgaccaactctctcagaccatacactttgaagcgtctcttaccaatcgattcttcaaaccttctcacacaatggatgcaaaattctgcagagttgccgccgcggctaattccaataagaaaaatgatcgctgacacatgttgtggcgtgccctcactactactcagtgcatcaaacaagctcaagagcatacggaagactgaagttgcatggcagcatgtcctgagcagatttgacctagttttctacgcagacccacttctgttggatgcaacttacgtcagttatcaacaactcccttccaatatccagcaatgctttctatactgttcactgttcccagttcatagctttactcccgaacagttgactggcatgtttgttgctgatgatctcataaaactgtcaagcagcaaatctgacatgcatatgtacttctccaagataatgacagaacactactatgatgtaatgcagaaacctcgacacaaagcatacgctatttacaagatgcaccctgggatgcaacttcttgcacaaatgattagcaggggatttcacttagcaatagatgccaggaaggaattagtttggcctgtagaaaatgcaaaaaaaagtgctcggtgcctctccttactcgttgactcaaagacaactgagcttccaacagaattgtttgaaatgggaaatctgaggacactaatcttgctcagagatgaaaagatgcttttgtctgacaagaagtgctcaatcacagacatcccagaagaattctgcaaatgtctgatagatatgcgtgtactacacatgcaatcttgcaggatcaaaagagtacctaagttaattggtatgcttaaaaaattagcctatcttaatctctcccacaatgatatagagattataccagattcaatatgcaaccttcagttcttgaagaatttcaacctttcacgaactgagattgctgaattgccagaatcagttggaaagatgcaagctttgcaagttttggatctatctcattgtgaaaaacttcttcatttgcatgaatctgtaagcaatcttgtgaatcttcaaatcctaaaccttgaaggctgtcattaccttgctattttaccaagaagcatgaaaaacttgaaaagtcttgcctacctaaacgttcttgaatgtcctttactaactcaaatgccctgtcagatgaaccaacttagaaacctcgagatattgccaaggtacattgcagcggaaaatcacgagcacaccatctcagagttgtgtcccttagttagtttgaaggaactcagtatttgcaatatggaaaatgcttcttttgatgacgcaaggaatgtaatcctgcaaaagaaaaataggcttgtgtctttggcattaagttggacaggaagctgtacagatcctatgattagttcaaaagcacagcaaatacttgaacttcttaagccaaaccgtggtttgaaagtgttatgcattttctcatgtccagcaaagaagcttccatcatggataacaagcatgccaccatacttaaaatcacttactgagatcaagctagttaatttggcatgtgaatgcctacctccactggggcaattacctcttctcaagattgttgaattaagtggaataaatgctgtcacacgtgtaggtgacgaattctatggggatgatggcacattcgcctcactggagaaactctcgttctttcacatgcgcaacctagaaatatggcttccatcacagagagaagcaattttcccaaaccttcaagaattgactatcacccaatgcccaaaatttagagcagtgcatgtgaaactcccagctgtcaaaagcttaatcatgttgttgaacaacgataaattgattggatctagaggagcactggaaggtttctctcaaaacctgaaatctctgtcggtttccctgtgtgacgggctattagagtgttcagaatgtgaggggctgagagaacttcgaggtattgaggaacttcatatttcaaggtgcacagaattgatttctttgccccatggcatgcagcatttgtcattcctccgaaccttgacaataacagagtgcacaaatttggaaactttcccagaatggttgaagaatttcacctctctgagatccttgcacatatctagttgtccaaagctgcacatacccaagagtttgaataatctgtcgaatctcgagattagtctagagtga
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| Protein seq | MVEKLYAESAQEQGKLLCIESLLQDLHTLFRMVHRKISGINDSALLMISANNEQYHQLLQRLWSLTLDIDDMLNKVSCYLTKTRVLSIQVHSSFILRRLPFRRRIVHKIKQSIVELQECYAQTYRIRFPAKHRDISTPMVCQGAHSIRPEGILGREKEVDDVLTMMQADHGKAGLSVLPITGMAGIGKTTLAQLVFSHPWAVKTFGDDRIWVVVSSSFDDMIILSRLAEFLNTRQCNTVDSESLQCLVKQRLCGRKFLIVLDDVWGQNLQKWKLLIEVLESAKSGSKMIVTSRVPDVVTMTNSLRPYTLKRLLPIDSSNLLTQWMQNSAELPPRLIPIRKMIADTCCGVPSLLLSASNKLKSIRKTEVAWQHVLSRFDLVFYADPLLLDATYVSYQQLPSNIQQCFLYCSLFPVHSFTPEQLTGMFVADDLIKLSSSKSDMHMYFSKIMTEHYYDVMQKPRHKAYAIYKMHPGMQLLAQMISRGFHLAIDARKELVWPVENAKKSARCLSLLVDSKTTELPTELFEMGNLRTLILLRDEKMLLSDKKCSITDIPEEFCKCLIDMRVLHMQSCRIKRVPKLIGMLKKLAYLNLSHNDIEIIPDSICNLQFLKNFNLSRTEIAELPESVGKMQALQVLDLSHCEKLLHLHESVSNLVNLQILNLEGCHYLAILPRSMKNLKSLAYLNVLECPLLTQMPCQMNQLRNLEILPRYIAAENHEHTISELCPLVSLKELSICNMENASFDDARNVILQKKNRLVSLALSWTGSCTDPMISSKAQQILELLKPNRGLKVLCIFSCPAKKLPSWITSMPPYLKSLTEIKLVNLACECLPPLGQLPLLKIVELSGINAVTRVGDEFYGDDGTFASLEKLSFFHMRNLEIWLPSQREAIFPNLQELTITQCPKFRAVHVKLPAVKSLIMLLNNDKLIGSRGALEGFSQNLKSLSVSLCDGLLECSECEGLRELRGIEELHISRCTELISLPHGMQHLSFLRTLTITECTNLETFPEWLKNFTSLRSLHISSCPKLHIPKSLNNLSNLEISLE |
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| Function | Putative disease resistance protein RGA1 [UniProtKB/Swiss-Prot:Q7XA42] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_04g0018170 | OsLiXu_04g0018170.01 | Chr04 | 26447071 | 26450199 | - | NAM | ||
| CDS seq | atggtggaaaagctttacgccgagtctgcgcaggagcagggtaagctgctttgcattgaaagcctgctccaggacctgcatacacttttcaggatggtccataggaagatcagtggcatcaacgacagtgcacttctcatgatcagcgccaacaacgagcagtaccaccagcttctacagaggctctggtctctcacacttgacattgatgacatgctcaacaaggtctcttgctatctaacaaaaacaagggtcctctcaattcaggtacacagctcattcatccttagaaggctcccttttcgacgccgcattgtccataagatcaaacaatcaatagttgaattgcaagaatgctatgcacagacatatagaatccgattcccagccaaacatagagatatcagcacacctatggtttgccaaggagcacatagcatacgaccagaagggatactaggaagggaaaaggaagtggatgatgttctaacaatgatgcaagctgatcatggcaaagctggcctgtcagtgcttcccataaccggaatggctggaattgggaagacaacccttgctcagttagtgttctcacatccatgggctgtcaagacatttggtgatgaccgaatttgggtcgtggtgtctagtagtttcgatgatatgataatattgagcagactagcagaatttctaaacaccaggcaatgcaacacagtggactctgagagccttcagtgccttgtcaagcagcgactatgcgggcgaaagtttcttattgtcttggatgatgtttggggtcagaatctgcagaaatggaagctattgattgaggtccttgagagtgccaagtcaggaagcaagatgattgtgactagtcgcgttccagatgttgtaacaatgaccaactctctcagaccatacactttgaagcgtctcttaccaatcgattcttcaaaccttctcacacaatggatgcaaaattctgcagagttgccgccgcggctaattccaataagaaaaatgatcgctgacacatgttgtggcgtgccctcactactactcagtgcatcaaacaagctcaagagcatacggaagactgaagttgcatggcagcatgtcctgagcagatttgacctagttttctacgcagacccacttctgttggatgcaacttacgtcagttatcaacaactcccttccaatatccagcaatgctttctatactgttcactgttcccagttcatagctttactcccgaacagttgactggcatgtttgttgctgatgatctcataaaactgtcaagcagcaaatctgacatgcatatgtacttctccaagataatgacagaacactactatgatgtaatgcagaaacctcgacacaaagcatacgctatttacaagatgcaccctgggatgcaacttcttgcacaaatgattagcaggggatttcacttagcaatagatgccaggaaggaattagtttggcctgtagaaaatgcaaaaaaaagtgctcggtgcctctccttactcgttgactcaaagacaactgagcttccaacagaattgtttgaaatgggaaatctgaggacactaatcttgctcagagatgaaaagatgcttttgtctgacaagaagtgctcaatcacagacatcccagaagaattctgcaaatgtctgatagatatgcgtgtactacacatgcaatcttgcaggatcaaaagagtacctaagttaattggtatgcttaaaaaattagcctatcttaatctctcccacaatgatatagagattataccagattcaatatgcaaccttcagttcttgaagaatttcaacctttcacgaactgagattgctgaattgccagaatcagttggaaagatgcaagctttgcaagttttggatctatctcattgtgaaaaacttcttcatttgcatgaatctgtaagcaatcttgtgaatcttcaaatcctaaaccttgaaggctgtcattaccttgctattttaccaagaagcatgaaaaacttgaaaagtcttgcctacctaaacgttcttgaatgtcctttactaactcaaatgccctgtcagatgaaccaacttagaaacctcgagatattgccaaggtacattgcagcggaaaatcacgagcacaccatctcagagttgtgtcccttagttagtttgaaggaactcagtatttgcaatatggaaaatgcttcttttgatgacgcaaggaatgtaatcctgcaaaagaaaaataggcttgtgtctttggcattaagttggacaggaagctgtacagatcctatgattagttcaaaagcacagcaaatacttgaacttcttaagccaaaccgtggtttgaaagtgttatgcattttctcatgtccagcaaagaagcttccatcatggataacaagcatgccaccatacttaaaatcacttactgagatcaagctagttaatttggcatgtgaatgcctacctccactggggcaattacctcttctcaagattgttgaattaagtggaataaatgctgtcacacgtgtaggtgacgaattctatggggatgatggcacattcgcctcactggagaaactctcgttctttcacatgcgcaacctagaaatatggcttccatcacagagagaagcaattttcccaaaccttcaagaattgactatcacccaatgcccaaaatttagagcagtgcatgtgaaactcccagctgtcaaaagcttaatcatgttgttgaacaacgataaattgattggatctagaggagcactggaaggtttctctcaaaacctgaaatctctgtcggtttccctgtgtgacgggctattagagtgttcagaatgtgaggggctgagagaacttcgaggtattgaggaacttcatatttcaaggtgcacagaattgatttctttgccccatggcatgcagcatttgtcattcctccgaaccttgacaataacagagtgcacaaatttggaaactttcccagaatggttgaagaatttcacctctctgagatccttgcacatatctagttgtccaaagctgcacatacccaagagtttgaataatctgtcgaatctcgagattagtctagagtga
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| Protein seq | MVEKLYAESAQEQGKLLCIESLLQDLHTLFRMVHRKISGINDSALLMISANNEQYHQLLQRLWSLTLDIDDMLNKVSCYLTKTRVLSIQVHSSFILRRLPFRRRIVHKIKQSIVELQECYAQTYRIRFPAKHRDISTPMVCQGAHSIRPEGILGREKEVDDVLTMMQADHGKAGLSVLPITGMAGIGKTTLAQLVFSHPWAVKTFGDDRIWVVVSSSFDDMIILSRLAEFLNTRQCNTVDSESLQCLVKQRLCGRKFLIVLDDVWGQNLQKWKLLIEVLESAKSGSKMIVTSRVPDVVTMTNSLRPYTLKRLLPIDSSNLLTQWMQNSAELPPRLIPIRKMIADTCCGVPSLLLSASNKLKSIRKTEVAWQHVLSRFDLVFYADPLLLDATYVSYQQLPSNIQQCFLYCSLFPVHSFTPEQLTGMFVADDLIKLSSSKSDMHMYFSKIMTEHYYDVMQKPRHKAYAIYKMHPGMQLLAQMISRGFHLAIDARKELVWPVENAKKSARCLSLLVDSKTTELPTELFEMGNLRTLILLRDEKMLLSDKKCSITDIPEEFCKCLIDMRVLHMQSCRIKRVPKLIGMLKKLAYLNLSHNDIEIIPDSICNLQFLKNFNLSRTEIAELPESVGKMQALQVLDLSHCEKLLHLHESVSNLVNLQILNLEGCHYLAILPRSMKNLKSLAYLNVLECPLLTQMPCQMNQLRNLEILPRYIAAENHEHTISELCPLVSLKELSICNMENASFDDARNVILQKKNRLVSLALSWTGSCTDPMISSKAQQILELLKPNRGLKVLCIFSCPAKKLPSWITSMPPYLKSLTEIKLVNLACECLPPLGQLPLLKIVELSGINAVTRVGDEFYGDDGTFASLEKLSFFHMRNLEIWLPSQREAIFPNLQELTITQCPKFRAVHVKLPAVKSLIMLLNNDKLIGSRGALEGFSQNLKSLSVSLCDGLLECSECEGLRELRGIEELHISRCTELISLPHGMQHLSFLRTLTITECTNLETFPEWLKNFTSLRSLHISSCPKLHIPKSLNNLSNLEISLE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.058908 | 0.081600 | 0.073329 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0512900 | SBH | 0.670620 | 0.138024 | 1.098016 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g41370 | RBH | 0.052591 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0512900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0018130 | RBH | 0.060714 | 0.0 | 0.202686 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0018910 | RBH | 0.0 | 0.343688 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0018620 | RBH | 0.0 | 0.0 | 0.224914 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0018330 | RBH | 0.005886 | 0.018851 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0018540 | RBH | 0.334558 | 0.0 | 0.542071 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0383600 | RBH | 0.2310065 | 2.950411 | 0.677213 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0017330 | RBH | 0.046281 | 0.102523 | 0.074472 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0383200 | RBH | 0.182621 | 5.256165 | 3.1113185 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0017830 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0017670 | RBH | 0.0 | 0.469961 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0017740 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0023320 | RBH | 0.085073 | 0.741355 | 0.718999 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0018330 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G017620 | RBH | 0.0 | 0.283312 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0017560 | RBH | 0.0 | 2.526719 | 0.250850 |
