Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_04g0017170 | OGI:04072560 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr04:25749315-25753925 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | actcccctgtcccctCcccccgctgctgctaggcccgatccactgctctccccaccggtggtgagtcaccacgctgcgtggcaaaccctagttaaccggcgcggcgtccggcgaccgtacactcggcggaggccgcagagcggcagcggcaggcggcggtgccgccgagggcagtcggctcggctcccgcggcaaagcgggaacgggagagagagcagggcggcacacgcgcgcgctgaggctgcgcgcggtgggcgcggcgtccggcgatgcccgggcaagagctataggaaggcgaagtcgtgggctacagccccagtccccagtgctaaggcagtaagctgctgctcactcctaaccatctccccctttttcccttgcttgatttgttgggggtactgacccttactagtagttttagaaatgagaagattgctgaaacgattgcggttctcaaccttgctcgcgtagtctcatgctgcttgagggcttgcccaggctccaaaatttcctggctccgcactttttagagggatgaatccgatgaaacccaacctggcattgtctcgtcgattctctagtggtaaataggagtttaccataatgaccgagcttgtttgatgattataacttagtgatatataggagtttcccataatacctagttgatttgctgattacaaattaattttatggattggctgaacatgggaatgaaaattgggggcaaaatcttgcaaattccttactttctgatccgctccatggttcgtgcttcagtgacccttcccctccatctcggacaagctcatggaccaggcagcggcgaggatgataagttaggatttggggttggggcgggggcagtttcctgggtttggagggaggtctgggcagtactggcacaaccagagtcactgagtcaggagagggcagtgggagggctcagcagcagggacgaaggggaacgagaagttccgaggtggatgacagcactagccgccgggtatggggaaggaggtggcgtaggggcagcggatgcaaggaagatggatcggtgcagtgggatatggaggaagggaaagtggaggggagggggtgggatgcatcgtctgtagaggtggcagcagttggggatggatttgctgtcggcgacctgacgcctctaaggtagagggtatgcagtggtggagattggttagcaggggcggcgttgagtgatggctgggggatggtgtttacattattggaggaggagaagatatgggcctttggatctcaatcaaacagtcaaaaagcgtaccatttagtgtAaaaaaaaaacttaccaattatatatagtcagccccataattttaggcacatatattggtcatatattcaagatgctgataccaattatttgcatttccccatgtcatatttagtaattacaagttacgtttatggtctatcaataacagttgtatcagcaaaattacatgtttatgatctattgtcaattttgtttcgtgtactgtattccaagatgcttacactctcgtgggtgttcaatttctgtctcgatataggtttctgattacccaagtgcagatgtgatggacacccatcacagcgatcaatatgcaaagagcagcctgcagctgcaattcagggacacctctgtttcctttgaaaacaacaattctgttttggataagcatgatattacaagccctcaagttggcatgacttttgagacagccgatttggcatatcggttctacttagaatatggctaccgtgcagggttcggggtctcaaagaggacttcccatagtgttgatggggtgaaataccgtgcaacatttgtttgttacaaaggcggcattgctaggatcaagcctggtctcaaagctcgaaggaggcttgttgcaaagactggttgcaaagcaatgatggtagtcaagtataacacaactgaaaaccagtgggaggtagtttttgttgagctggagcataaccatccatgtaatcctgaaatggttagattcatgatgtgctttaaagatctccctgactggcagagagagcaccgcccattcaatgccaagactagattgaatccaaagattcactctggcagaggcaggccacccaaccaaaacaaagacttcatggtgaaaaaaaccttctcacaatcaaattattccattgaagcagcaggcaaggctggaaagctgagatttgcagagggtgatgttgaggcactcttggtcttctttgataagatgcaagctcaaaattcaaactttttctacaactgggacatggatgatgaaggtcggctcaagaatgtttgctgggtcgatgctagatcgagagctgcataccagcacttctgtgatgttgtttgctttgatactgtttatttgacataccaatttgtcattccattggttgcttttcttggaatcaaccatcatgggcaatttgtgttgttgggatgcggtttacttggggacgaatctccagagactttttcttggttattcaagaaatggctaaaatgtatgaatgataaatcacctgaagcaattattaccacccactcaagaccagtggtcaaagctgttgctgaggtatttccaaatactcgtcacagatacaatctttggcatatcatgaaagagcttcctgaaatgtctggaagagttgaggataaggaggcaattagcctaagaatgaaaaaggtagtcttcgacactattgcatcaactgattttgagagggaatgggttgagatggtcaatcagtataaccttcatgataatcattggcttacaaccttatttgaagagagggcaaaatgggtaccagcatatgtcaaggatactttctgggctggtatatccactgttcgccgcagtgagcggttggaggccttttttgatggatacattacaccagagaccacaattaagacatttattgaacaatttgatactgctatgaagcttaggtctgaccgagaagcgtatgatgattttcgctcatttcagcaaaggcctcaagtcttgtctggtctactctttgaggagcaatttgcaaatgtttatacaataaatatgtttcagaagttccaagatcacttgaagcagctgatgaacgtgacttgcactgaagtcagtaggaatggatcaatagtgacttacactgtgaccgtcattggtaaggagaggaagtatgactacaaagtgatgtataacagtgctgagaaagaggtgtggtgtatctgcaggtccttccagtttaaaggtattttgtgtagccatgctcttgctgtcttgagacaggaacttgtgatgctgataccttataaatatattctcgatcgctggaggaaggactacaaatgccccgaggaatccaaggaaactcccatctcaccaaaagcgatcaaagctacagggaagggcacaaaaccggaaaatgcccgtgaagataaagtggacaatctgtacaagcatggtcaccagtactttgctgacattgtggaaatgggagcaacggaccctgatgcaatggagtatgttttgtcggtcatgaaagaagccaaagaaaaggtacggaagttcgaggaatctcggaaagatagaaggcctggagacagtccagtttctactggtaagagaaatggcaagtcttcaagaccatccaatgatgatgggggcaatggcatatcagattcaacacctgcgactacaacagtgccgacagtcgcggtggccacatctacaacaatgcaggcaacgcctacaatggtggctatagcgcctacttcggcaactgtgcccgccggaatgtttttggtaccaatgcacccacatccgatggttttcccacctttcacccctgcagtaccaccagtggtagcacctgcagtgccacctccagcaccagcagccaatgtgggtgatgtggcttccaactccacaaggaagagaaagaaaagaaaggggaacaaatgatgttcctaatactgattatgtaagcgcttcactttgccgcttctccttttgtgctgtactttgctttgtggtgttgatttattcagataatctcatcgtgcccttaccccgtattttttgttccaggcctaactcaaatttagtcctacaagctgcaccaggccctcctgtccatgtgtaataatggtttatcatcgtctcctgctgcaggatgatctgcccctctgaatgctttctgtgaattatcccccttgacttggaactgtccgtgcagctttggactgtctactgtaaattgatatggaaagtaatgtattatgtatgtagtgcagcttaggaatgctagtctctgtttctgctcatgtggattgcgacctggagcagcgcagtaccaagactaccagtagcgtagcagtaccccttgctggttggtagagtaccattttctttcctttctggagtttgtcactttatgtaatgatgtaatcacactgaactttatggccaaccactaatgcttagtttcatcttatgccgttggctgttgcactgagccctgagcattattttcatcgtatgcaagctcaccatttcttgtcat
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| CDS seq | atggacacccatcacagcgatcaatatgcaaagagcagcctgcagctgcaattcagggacacctctgtttcctttgaaaacaacaattctgttttggataagcatgatattacaagccctcaagttggcatgacttttgagacagccgatttggcatatcggttctacttagaatatggctaccgtgcagggttcggggtctcaaagaggacttcccatagtgttgatggggtgaaataccgtgcaacatttgtttgttacaaaggcggcattgctaggatcaagcctggtctcaaagctcgaaggaggcttgttgcaaagactggttgcaaagcaatgatggtagtcaagtataacacaactgaaaaccagtgggaggtagtttttgttgagctggagcataaccatccatgtaatcctgaaatggttagattcatgatgtgctttaaagatctccctgactggcagagagagcaccgcccattcaatgccaagactagattgaatccaaagattcactctggcagaggcaggccacccaaccaaaacaaagacttcatggagaggaagtatgactacaaagtgatgtataacagtgctgagaaagaggtgtggtgtatctgcaggtccttccagtttaaaggtattttgtgtagccatgctcttgctgtcttgagacaggaacttgtgatgctgataccttataaatatattctcgatcgctggaggaaggactacaaatgccccgaggaatccaaggaaactcccatctcaccaaaagcgatcaaagctacagggaagggcacaaaaccggaaaatgcccgtgaagataaagtggacaatctgtacaagcatggtcaccagtactttgctgacattgtggaaatgggagcaacggaccctgatgcaatggagtatgttttgtcggtcatgaaagaagccaaagaaaaggtacggaagttcgaggaatctcggaaagatagaaggcctggagacagtccagtttctactggtaagagaaatggcaagtcttcaagaccatccaatgatgatgggggcaatggcatatcagattcaacacctgcgactacaacagtgccgacagtcgcggtggccacatctacaacaatgcaggcaacgcctacaatggtggctatagcgcctacttcggcaactgtgcccgccggaatgtttttggtaccaatgcacccacatccgatggttttcccacctttcacccctgcagtaccaccagtggtagcacctgcagtgccacctccagcaccagcagccaatgtgggtgatgtggcttccaactccacaaggaagagaaagaaaagaaaggggaacaaatga
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| Protein seq | MDTHHSDQYAKSSLQLQFRDTSVSFENNNSVLDKHDITSPQVGMTFETADLAYRFYLEYGYRAGFGVSKRTSHSVDGVKYRATFVCYKGGIARIKPGLKARRRLVAKTGCKAMMVVKYNTTENQWEVVFVELEHNHPCNPEMVRFMMCFKDLPDWQREHRPFNAKTRLNPKIHSGRGRPPNQNKDFMERKYDYKVMYNSAEKEVWCICRSFQFKGILCSHALAVLRQELVMLIPYKYILDRWRKDYKCPEESKETPISPKAIKATGKGTKPENAREDKVDNLYKHGHQYFADIVEMGATDPDAMEYVLSVMKEAKEKVRKFEESRKDRRPGDSPVSTGKRNGKSSRPSNDDGGNGISDSTPATTTVPTVAVATSTTMQATPTMVAIAPTSATVPAGMFLVPMHPHPMVFPPFTPAVPPVVAPAVPPPAPAANVGDVASNSTRKRKKRKGNK |
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| Function | Protein FAR1-RELATED SEQUENCE 6 [UniProtKB/Swiss-Prot:Q9SSQ4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_04g0017170 | OsLiXu_04g0017170.01 | Chr04 | 25749315 | 25753925 | + | NAM | ||
| CDS seq | atggacacccatcacagcgatcaatatgcaaagagcagcctgcagctgcaattcagggacacctctgtttcctttgaaaacaacaattctgttttggataagcatgatattacaagccctcaagttggcatgacttttgagacagccgatttggcatatcggttctacttagaatatggctaccgtgcagggttcggggtctcaaagaggacttcccatagtgttgatggggtgaaataccgtgcaacatttgtttgttacaaaggcggcattgctaggatcaagcctggtctcaaagctcgaaggaggcttgttgcaaagactggttgcaaagcaatgatggtagtcaagtataacacaactgaaaaccagtgggaggtagtttttgttgagctggagcataaccatccatgtaatcctgaaatggttagattcatgatgtgctttaaagatctccctgactggcagagagagcaccgcccattcaatgccaagactagattgaatccaaagattcactctggcagaggcaggccacccaaccaaaacaaagacttcatggagaggaagtatgactacaaagtgatgtataacagtgctgagaaagaggtgtggtgtatctgcaggtccttccagtttaaaggtattttgtgtagccatgctcttgctgtcttgagacaggaacttgtgatgctgataccttataaatatattctcgatcgctggaggaaggactacaaatgccccgaggaatccaaggaaactcccatctcaccaaaagcgatcaaagctacagggaagggcacaaaaccggaaaatgcccgtgaagataaagtggacaatctgtacaagcatggtcaccagtactttgctgacattgtggaaatgggagcaacggaccctgatgcaatggagtatgttttgtcggtcatgaaagaagccaaagaaaaggtacggaagttcgaggaatctcggaaagatagaaggcctggagacagtccagtttctactggtaagagaaatggcaagtcttcaagaccatccaatgatgatgggggcaatggcatatcagattcaacacctgcgactacaacagtgccgacagtcgcggtggccacatctacaacaatgcaggcaacgcctacaatggtggctatagcgcctacttcggcaactgtgcccgccggaatgtttttggtaccaatgcacccacatccgatggttttcccacctttcacccctgcagtaccaccagtggtagcacctgcagtgccacctccagcaccagcagccaatgtgggtgatgtggcttccaactccacaaggaagagaaagaaaagaaaggggaacaaatga
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| Protein seq | MDTHHSDQYAKSSLQLQFRDTSVSFENNNSVLDKHDITSPQVGMTFETADLAYRFYLEYGYRAGFGVSKRTSHSVDGVKYRATFVCYKGGIARIKPGLKARRRLVAKTGCKAMMVVKYNTTENQWEVVFVELEHNHPCNPEMVRFMMCFKDLPDWQREHRPFNAKTRLNPKIHSGRGRPPNQNKDFMERKYDYKVMYNSAEKEVWCICRSFQFKGILCSHALAVLRQELVMLIPYKYILDRWRKDYKCPEESKETPISPKAIKATGKGTKPENAREDKVDNLYKHGHQYFADIVEMGATDPDAMEYVLSVMKEAKEKVRKFEESRKDRRPGDSPVSTGKRNGKSSRPSNDDGGNGISDSTPATTTVPTVAVATSTTMQATPTMVAIAPTSATVPAGMFLVPMHPHPMVFPPFTPAVPPVVAPAVPPPAPAANVGDVASNSTRKRKKRKGNK
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_04g0017170 | OsLiXu_04g0017170.02 | Chr04 | 25749375 | 25753855 | + | IsoSeq | ||
| CDS seq | atgataatcattggcttacaaccttatttgaagagagggcaaaatgggtaccagcatatgtcaaggatactttctgggctggtatatccactgttcgccgcagtgagcggttggaggccttttttgatggatacattacaccagagaccacaattaagacatttattgaacaatttgatactg |
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| Protein seq | MIIIGLQPYLKRGQNGYQHMSRILSGLVYPLFAAVSGWRPFLMDTLHQRPQLRHLLNNLIL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr04 | 25750886 | 25753343 | + | OsLiXu_04g0017170.02 | OsLiXu_04g0017170.02,OsLiXu_04g0017170.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.157191 | 1.015189 | 1.799707 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0476500 | RBH | 2.892113 | 1.787543 | 5.617553 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g40060 | RBH | 1.907454 | 1.172554 | 1.375492 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0476500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0017010 | RBH | 0.481255 | 7.063056 | 5.803851 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0017800 | RBH | 0.536747 | 3.850086 | 3.101138 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0017500 | RBH | 1.632613 | 7.761147 | 8.126534 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0017220 | RBH | 0.289047 | 0.168838 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0017450 | RBH | 5.493639 | 5.637923 | 13.566596 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0371700 | RBH | 7.073142 | 23.6620045 | 50.3693945 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0016240 | RBH | 0.469280 | 0.638289 | 1.357283 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0370100 | RBH | 8.103733 | 26.396615 | 29.1081315 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0016800 | RBH | 0.552294 | 0.447153 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0016660 | RBH | 1.018948 | 6.657408 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0016680 | RBH | 1.741283 | 14.554047 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0024200 | RBH | 0.670708 | 0.573313 | 0.558039 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0017280 | RBH | 0.456421 | 1.593938 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G016510 | RBH | 0.429734 | 2.914867 | 2.092150 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0016510 | RBH | 1.631457 | 8.523340 | 8.113687 |
