Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_04g0011450 | OGI:04061090 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr04:20844673-20847933 | ||||||||
| Gene Symbol | HIPP29, OsHMP25, HMP25, OsHIPP29, OsaHIP29, HIP29 | ||||||||||
| DNA seq | accccaccccccaccacactcaccaagaacaagagcagagcagagcagaggaggaagaggaatcagccgccatgggcgaggtgaggacgagctccttcctcccttccccggcgagcgcaaaggcgagttcttgcgctgcaaaggcggaatcttgattgttttttggtgatgatggtgattgcaggaggagaagaaggaggcggcgaaggccaaggaggaggagaagcccaagcaggaggagaagcccaaggagcaggaggaaggcaagaaggaggagaagcccaaggaggaaggggagaaggggaaggacggcggcggcggcgaggagaagaaggacggcgaggcggctgcggcggcggacgctccaccgccgccgccgccgccggaggaggtggtgatgcgcgtctacatgcactgcgagggctgcgccaggaaggtccggaagatcctcaagggattcgatggtaatgctccttttctaacctcgcctgattatgttctacattgatgattgatgctgtgttctttgctccccttttttttttgttgggtcggattaatctttcatgttcagtgtcatgtgtgtgtgtgttcttgtctgtgatgtgaaattctagcgtttaatctgggcatatgatgtctgaacattttaggtggaaattttctttcagggaatgagaactcctttttttttctttttctgtttgttggaacttgtgttttcgtttgggaatggaagctgggaaaaaaaaagaaagtctgttcgttcatcaggtccgagaggcatgatgtgcttagcaaattggttataaaaaaaattaactgaagactgtgggttttctctgtgtgctgatctgtgtggttcaagatatattctaaggttgttttcagaagaattcatgtggtttcatggtgggatttggaggggaggttaggtgggggtaagcttttaaataatcagattcacctagtcaatcaacttcagatctttctttttcaagagccgcacatgaatccacccagttgattaatggtttaagagaatgactagagatccgaataacttttaactcgggaaagttggagtagattccaagagaatgacagccttgagtatcatgtccttcagtgttttgttctaaaaaggcccaaaagtgaacctgattccccaatcatcttcagatgctcaagatgttgcaagtatatctctgcatattctccatgtcttactactagtagttgctatcaagggaaattcaggattcttttagctcaaaagactcggttttcatgggtgtagcggtatcgattccgcatccaaaaactaaaatatatgttcttgtgtgtaatgtaggagtggaggatgtgatcgccgactcgaagtcgcacaaggtgttggtgaaagggaagaaggcagctgcagacccgatgaaggtggtggagcgagttcagaagaagaccggccggaaggtggagctcctctcgccgatgcctcctccaccggaggagaagaaggaagaggagaagaaagaggaacctgagcctccaaagcctgaggagaagaaggaggtgaatgatcctagcaagtgctcatagagacataattacccttcatgcattttcctgcactttccatcaccaaatcggcggtaattgcgccaattttgcttgaactgtgtagttcaaatactgacataaggatatctctgtctctgtttgattttgaagccgccggtgatcgcggttgtgctgaaggtgcacatgcattgtgaggcctgtgctcaggggatcaagaagaggatcctcaagatgaaaggtacttaatagcatacatcaaatttctagtactttccatttctactttttttaaaaaaaaaatatcagcacaaaagtcagatgtttttcttcttttttacagagttacactagcttcagtagcaattagtttgctaaaatatatgtttgatgaatcataatgtggcctgtgatttagcaatctctagcgtatcttgttctctgatgcggtgataaagaggaggtactggaatcctctttttagtgaatgacacaaattaaagccaaaatgtgggccttgtacctgtagcttcttttcttgcgaaaattgcatttttccccctgagataagattcattccttcaactacttgtctgactacaaattaaataaagatcatttggattgttcaaaagatattctactcagcatcacatgagtctagtgtcaggatcaatgatacttctgaataaccaaataactctctttcaaatgtatatatgcaggggtacaatcagctgagcctgacctgaaggcgtcggaggtaaccgtgaagggtgtgtttgaggaggccaagctggccgagtacgtgcacaagcgcaccggcaagcacgctgccatcatcaagtctgaaccggtagcccctcccgagaaggtggcagccgaaggtggtgatgagaagaaggcagccgaaggcggcgatgagaagaaggacgagaaggaggagaagaaggatggaaaagaggaaggtggcaatggtggcggagacgagaagaaggaagagaaggagaaggagaaggagggtggcaatgccgacggcgaggagaaggacaaggacaaagagaaagaccccgccgccattgccgccgcgaacctatacctgcattatccaaggttcgcattccctgccggatactacccgcccgggccgggctatgcctacccaccgccctacccgccaccataccagccatcctacccgccatacccatcgcacccttcgcaccacccgtcgcagatcttcagcgacgaaaacccgaatgcctgctccgtcatgtaaaaagttttagaacctggggggtctagagtgaaaaagaataagaagagcacaggactgcataatttggagggtgtcattgcaacaattgccctttgagcaaagcaaagctaaaatggcagcttgaagaaagtaccaggcttttttgggggttaggtttctttttaactttcttttgtaatttttacccttttctttcatctagtataaactacaaagcaagtctggacttccttgtcagttcatggatgctatcttatgtagaattttgctctctgtactgtttcaccttcaaactaatgtaaaaactgtactatactagtataatttttaggtgtacctttggttccctgtcctaatgggctccatttttactcatgaaacctgaaacctgaagtattatggtggtg
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| CDS seq | atgggcgaggaggagaagaaggaggcggcgaaggccaaggaggaggagaagcccaagcaggaggagaagcccaaggagcaggaggaaggcaagaaggaggagaagcccaaggaggaaggggagaaggggaaggacggcggcggcggcgaggagaagaaggacggcgaggcggctgcggcggcggacgctccaccgccgccgccgccgccggaggaggtggtgatgcgcgtctacatgcactgcgagggctgcgccaggaaggtccggaagatcctcaagggattcgatggagtggaggatgtgatcgccgactcgaagtcgcacaaggtgttggtgaaagggaagaaggcagctgcagacccgatgaaggtggtggagcgagttcagaagaagaccggccggaaggtggagctcctctcgccgatgcctcctccaccggaggagaagaaggaagaggagaagaaagaggaacctgagcctccaaagcctgaggagaagaaggagccgccggtgatcgcggttgtgctgaaggtgcacatgcattgtgaggcctgtgctcaggggatcaagaagaggatcctcaagatgaaaggggtacaatcagctgagcctgacctgaaggcgtcggaggtaaccgtgaagggtgtgtttgaggaggccaagctggccgagtacgtgcacaagcgcaccggcaagcacgctgccatcatcaagtctgaaccggtagcccctcccgagaaggtggcagccgaaggtggtgatgagaagaaggcagccgaaggcggcgatgagaagaaggacgagaaggaggagaagaaggatggaaaagaggaaggtggcaatggtggcggagacgagaagaaggaagagaaggagaaggagaaggagggtggcaatgccgacggcgaggagaaggacaaggacaaagagaaagaccccgccgccattgccgccgcgaacctatacctgcattatccaaggttcgcattccctgccggatactacccgcccgggccgggctatgcctacccaccgccctacccgccaccataccagccatcctacccgccatacccatcgcacccttcgcaccacccgtcgcagatcttcagcgacgaaaacccgaatgcctgctccgtcatgtaa
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| Protein seq | MGEEEKKEAAKAKEEEKPKQEEKPKEQEEGKKEEKPKEEGEKGKDGGGGEEKKDGEAAAAADAPPPPPPPEEVVMRVYMHCEGCARKVRKILKGFDGVEDVIADSKSHKVLVKGKKAAADPMKVVERVQKKTGRKVELLSPMPPPPEEKKEEEKKEEPEPPKPEEKKEPPVIAVVLKVHMHCEACAQGIKKRILKMKGVQSAEPDLKASEVTVKGVFEEAKLAEYVHKRTGKHAAIIKSEPVAPPEKVAAEGGDEKKAAEGGDEKKDEKEEKKDGKEEGGNGGGDEKKEEKEKEKEGGNADGEEKDKDKEKDPAAIAAANLYLHYPRFAFPAGYYPPGPGYAYPPPYPPPYQPSYPPYPSHPSHHPSQIFSDENPNACSVM |
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| Function | Heavy metal-associated isoprenylated plant protein 7 [UniProtKB/Swiss-Prot:Q9C5D3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_04g0011450 | OsLiXu_04g0011450.01 | Chr04 | 20844673 | 20847933 | + | NAM | ||
| CDS seq | atgggcgaggaggagaagaaggaggcggcgaaggccaaggaggaggagaagcccaagcaggaggagaagcccaaggagcaggaggaaggcaagaaggaggagaagcccaaggaggaaggggagaaggggaaggacggcggcggcggcgaggagaagaaggacggcgaggcggctgcggcggcggacgctccaccgccgccgccgccgccggaggaggtggtgatgcgcgtctacatgcactgcgagggctgcgccaggaaggtccggaagatcctcaagggattcgatggagtggaggatgtgatcgccgactcgaagtcgcacaaggtgttggtgaaagggaagaaggcagctgcagacccgatgaaggtggtggagcgagttcagaagaagaccggccggaaggtggagctcctctcgccgatgcctcctccaccggaggagaagaaggaagaggagaagaaagaggaacctgagcctccaaagcctgaggagaagaaggagccgccggtgatcgcggttgtgctgaaggtgcacatgcattgtgaggcctgtgctcaggggatcaagaagaggatcctcaagatgaaaggggtacaatcagctgagcctgacctgaaggcgtcggaggtaaccgtgaagggtgtgtttgaggaggccaagctggccgagtacgtgcacaagcgcaccggcaagcacgctgccatcatcaagtctgaaccggtagcccctcccgagaaggtggcagccgaaggtggtgatgagaagaaggcagccgaaggcggcgatgagaagaaggacgagaaggaggagaagaaggatggaaaagaggaaggtggcaatggtggcggagacgagaagaaggaagagaaggagaaggagaaggagggtggcaatgccgacggcgaggagaaggacaaggacaaagagaaagaccccgccgccattgccgccgcgaacctatacctgcattatccaaggttcgcattccctgccggatactacccgcccgggccgggctatgcctacccaccgccctacccgccaccataccagccatcctacccgccatacccatcgcacccttcgcaccacccgtcgcagatcttcagcgacgaaaacccgaatgcctgctccgtcatgtaa
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| Protein seq | MGEEEKKEAAKAKEEEKPKQEEKPKEQEEGKKEEKPKEEGEKGKDGGGGEEKKDGEAAAAADAPPPPPPPEEVVMRVYMHCEGCARKVRKILKGFDGVEDVIADSKSHKVLVKGKKAAADPMKVVERVQKKTGRKVELLSPMPPPPEEKKEEEKKEEPEPPKPEEKKEPPVIAVVLKVHMHCEACAQGIKKRILKMKGVQSAEPDLKASEVTVKGVFEEAKLAEYVHKRTGKHAAIIKSEPVAPPEKVAAEGGDEKKAAEGGDEKKDEKEEKKDGKEEGGNGGGDEKKEEKEKEKEGGNADGEEKDKDKEKDPAAIAAANLYLHYPRFAFPAGYYPPGPGYAYPPPYPPPYQPSYPPYPSHPSHHPSQIFSDENPNACSVM
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 1.736250 | 6.295876 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0390100 | RBH | 0.156687 | 0.160668 | 25.672487 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g32030 | RBH | 0.100893 | 0.102895 | 6.292553 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0390100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0011360 | RBH | 0.0 | 24.477547 | 60.213131 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0012140 | RBH | 0.000000 | 11.229576 | 10.669377 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0011840 | RBH | 0.000000 | 18.249998 | 70.842331 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0011510 | RBH | 0.0 | 1.914875 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0011750 | RBH | 0.000000 | 94.848938 | 77.655396 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0305500 | RBH | 8.5685335 | 4.270138 | 21.306359 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0010670 | RBH | 0.059250 | 2.284164 | 9.249382 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0302000 | RBH | 14.764447 | 6.000157 | 41.202259 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0011330 | RBH | 0.0 | 0.338283 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0010920 | RBH | 0.0 | 25.869080 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0010950 | RBH | 0.0 | 62.502850 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0018460 | RBH | 1.759774 | 0.415712 | 2.615447 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0011680 | RBH | 0.0 | 14.487096 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G010840 | RBH | 0.0 | 18.268263 | 25.215616 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0010880 | RBH | 0.0 | 12.766182 | 32.883396 |
