Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_04g0009970 | OGI:04055320 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr04:18376796-18379396 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aaccaatctcagagatgatacagttaccatattaacagcaaacataactgatctttcatgtgactttcacgcacaagcacaaacgcaggaaagttggaccatggtgataccaccagttctgtcctcttccaagcgacaagagaaaggaaaaaaaaacatacagaatgatttgctccataatctaaattagaagagtatcatcaacttttaagaactagtagtaactatgaaaacaaaattataaccaatctcagagatgatacaactaccatattaatagcaaacataactgatctttcatgtgactatcaagcacaaacgccggaacgttggaacatggtgatacgtccagttcagtcctcttccaagcaaaaaagcgatacagaatgatttactccataatctaaattagaagagtatcatcatttgctaagctgacataaaagaacatgaagcacattatttggatacagaagtgcatgtggaccttcatgtaaacttactactgctcaaactaacaaaattacccgcagatctttgcgcgagaggagcgaacataacattccatttcaccggctctgcctacttttgctgataaccctttgcttcacaactagaataatccttcccctgccaccaaaattacagtgatctttaataacgaacacatcttacatccatacatttatacacatcaattcatagatatattcactaatctgatagtaacagcacagtaaaacaaatctacaaaattagaatgcagacttgcgaaaatataacaatcacacttacttaactcctccaatgatttgctaacatcactatcaccagattgcatcaactgaatcttgcctgcacagattAaaaataataaacatgaaagcttatacatagataaaggagcagaaaatatataacatctgtagagagtgacaatggtaagaactaagaaattatatgaccacagtacaaggcgagacaaacatattacatatatactaaatttgggtagaccagtcctgtcctaaaaatattttcagttgcttcagtcgcgactcatggcttatgagccaaaaaactattgagtgttgctacaggaaaatgatttgaacaaaagagagtattcatttaaatttcagattggcatacataccatcacgccgcacacagatctctggtatatttttcacttgatcattaattatgtcattgtagactctggtctcaatatcaccctcaacgtagaccgcagaactgaaacaagacaccatgaccatgtacccttagtaacactaacactctgaactaaagtttagatgctatatcatacaagaaaaataaatcttatgctttgagccctacttcttgaccagtttctgaacagcatatgcaccaagctgctcattgtgaacagatattcgatgccactgagctggcattggcaagttttcagcacctactgtcctctggtcaaacatgccacctgttccaacagtaaacacggttactgtatgcccatttctcagtattttctgcactggcacttgtccaacttttccacaaataatagcctatcaagtatgagataagtgaacaagggtcaaacattgttctaatgttctttcaaaccaaacaagggtcacaattcttgtcttaaaaaacaaagtgtatattcacaaagagtatatatttcatcaaataccctgtgcacaccacggaatacgtgatctggcctggaatgtgtgaaatcatcttcggcgtcaccacccttgcgattcttctcatcgacatcagaaaaagatgctgtcgagttccatgcttgcgattttctgtaaaactctaaaagcagcagacaccaaacactcagttatatacatatacacaagatgagcaccttacaccaaacattagaaaggctaaactaagtgcccaccaactgagcttctttgctgtcctaggagcctcctcacgctcatgctctggagcaatttcgcactcatcattataaacctaaatacacaaaacaggtcatacaactgtgaaatcttgttgaagacttcagaaatgtaagtatgaatggctgaacgaacagggaacttcacactgtcccgtatacttcgcatctatgaacaacaacgccattggccatctagtacctaccaactccatagatatcaagaaaatcgagaagaaactggatgggttaaccggagggaatgaaatcgatccccaaagtccggatggatttccaatctacgggacgccggcgttgcggtggactagtgggggaggaagggatgcgagggaagaaggtgggctaccttcgattcgaaccgcaatgaggccgctgaaaggggatcggccgcgtcgccctccgaaccagagcaggaaaggaagcacagccgcagcggaggaggttgccgagcttgtcgccggcggcgcgcgcgaggagacacgccctgcaaggctacgcccccaaaccctacctccggctcgctggagtcgagcggacgccggcgggcggaagagagagaccgaacgtggagagtggagagaggaaatcttggattcttggtaattcgctattttgctgagact
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| CDS seq | tataatgatgagtgcgaaattgctccagagcatgagcgtgaggaggctcctaggacagcaaagaagctcagttggtgggcacttaagttttacagaaaatcgcaagcatggaactcgacagcatctttttctgatgtcgatgagaagaatcgcaagggtggtgacgccgaagatgatttcacacattccaggccagatcacgtattccgtggtgtgcacagggctattatttgtggaaaagttggacaagtgccagtgcagaaaatactgagaaatgggcatacagtaaccgtgtttactgttggaacaggtggcatgtttgaccagaggacagtaggtgctgaaaacttgccaatgccagctcagtggcatcgaatatctgttcacaatgagcagcttggtgcatatgctgttcagaaactggtcaagaattctgcggtctacgttgagggtgatattgagaccagagtctacaatgacataattaatgatcaagtgaaaaatataccagagatctgtgtgcggcgtgatggcaagattcagttgatgcaatctggtgatagtgatgttagcaaatcattggaggagttaagggaaggattattctag
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| Protein seq | YNDECEIAPEHEREEAPRTAKKLSWWALKFYRKSQAWNSTASFSDVDEKNRKGGDAEDDFTHSRPDHVFRGVHRAIICGKVGQVPVQKILRNGHTVTVFTVGTGGMFDQRTVGAENLPMPAQWHRISVHNEQLGAYAVQKLVKNSAVYVEGDIETRVYNDIINDQVKNIPEICVRRDGKIQLMQSGDSDVSKSLEELREGLF |
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| Function | Single-stranded DNA-binding protein, mitochondrial [UniProtKB/Swiss-Prot:Q84J78] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_04g0009970 | OsLiXu_04g0009970.02 | Chr04 | 18377090 | 18378805 | - | NAM | ||
| CDS seq | tataatgatgagtgcgaaattgctccagagcatgagcgtgaggaggctcctaggacagcaaagaagctcagttggtgggcacttaagttttacagaaaatcgcaagcatggaactcgacagcatctttttctgatgtcgatgagaagaatcgcaagggtggtgacgccgaagatgatttcacacattccaggccagatcacgtattccgtggtgtgcacagggctattatttgtggaaaagttggacaagtgccagtgcagaaaatactgagaaatgggcatacagtaaccgtgtttactgttggaacaggtggcatgtttgaccagaggacagtaggtgctgaaaacttgccaatgccagctcagtggcatcgaatatctgttcacaatgagcagcttggtgcatatgctgttcagaaactggtcaagaattctgcggtctacgttgagggtgatattgagaccagagtctacaatgacataattaatgatcaagtgaaaaatataccagagatctgtgtgcggcgtgatggcaagattcagttgatgcaatctggtgatagtgatgttagcaaatcattggaggagttaagggaaggattattctag
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| Protein seq | YNDECEIAPEHEREEAPRTAKKLSWWALKFYRKSQAWNSTASFSDVDEKNRKGGDAEDDFTHSRPDHVFRGVHRAIICGKVGQVPVQKILRNGHTVTVFTVGTGGMFDQRTVGAENLPMPAQWHRISVHNEQLGAYAVQKLVKNSAVYVEGDIETRVYNDIINDQVKNIPEICVRRDGKIQLMQSGDSDVSKSLEELREGLF
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_04g0009970 | OsLiXu_04g0009970.01 | Chr04 | 18376796 | 18378805 | - | NAM | ||
| CDS seq | tataatgatgagtgcgaaattgctccagagcatgagcgtgaggaggctcctaggacagcaaagaagctcagttggtgggcacttaagttttacagaaaatcgcaagcatggaactcgacagcatctttttctgatgtcgatgagaagaatcgcaagggtggtgacgccgaagatgatttcacacattccaggccagatcacgtattccgtggtgtgcacagggctattatttgtggaaaagttggacaagtgccagtgcagaaaatactgagaaatgggcatacagtaaccgtgtttactgttggaacaggtggcatgtttgaccagaggacagtaggtgctgaaaacttgccaatgccagctcagtggcatcgaatatctgttcacaatgagcagcttggtgcatatgctgttcagaaactggtcaagaattctgcggtctacgttgagggtgatattgagaccagagtctacaatgacataattaatgatcaagtgaaaaatataccagagatctgtgtgcggcgtgatggcaagattcagttgatgcaatctggtgatagtgatgttagcaaatcattggaggagttaagggaaggattattctag
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| Protein seq | YNDECEIAPEHEREEAPRTAKKLSWWALKFYRKSQAWNSTASFSDVDEKNRKGGDAEDDFTHSRPDHVFRGVHRAIICGKVGQVPVQKILRNGHTVTVFTVGTGGMFDQRTVGAENLPMPAQWHRISVHNEQLGAYAVQKLVKNSAVYVEGDIETRVYNDIINDQVKNIPEICVRRDGKIQLMQSGDSDVSKSLEELREGLF
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_04g0009970 | OsLiXu_04g0009970.03 | Chr04 | 18377054 | 18379396 | - | IsoSeq | ||
| CDS seq | atgtcgatgagaagaatcgcaagggtggtgacgccgaagatgatttcacacattccaggccagatcacgtattccgtggtgtgcacagggctattatttgtggaaaagttggacaagtgccagtgcagaaaa |
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| Protein seq | MSMRRIARVVTPKMISHIPGQITYSVVCTGLLFVEKLDKCQCRK |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr04 | 18378637 | 18378732 | - | OsLiXu_04g0009970.01,OsLiXu_04g0009970.02 | OsLiXu_04g0009970.02,OsLiXu_04g0009970.03,OsLiXu_04g0009970.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.148378 | 0.0 | 0.837090 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0363700 | RBH | 1.148000 | 1.105079 | 1.727440 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g29424 | RBH | 0.018226 | 0.383720 | 0.056324 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0363700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0009760 | RBH | 0.710042 | 13.055430 | 5.405562 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0010520 | RBH | 0.0 | 0.000000 | 1.753179 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0010330 | RBH | 1.640349 | 12.418109 | 10.015592 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0009940 | RBH | 0.276963 | 0.403322 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0010180 | RBH | 9.239947 | 0.000000 | 7.868968 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0276600 | RBH | 2.2136035 | 2.9762465 | 10.291918 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0009240 | RBH | 0.076487 | 0.083132 | 0.545848 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0274100 | RBH | 5.9828995 | 3.538583 | 26.619132 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0009800 | RBH | 0.046560 | 0.292121 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0009410 | RBH | 0.0 | 15.986354 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0009470 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0010090 | RBH | 0.620103 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G009230 | RBH | 0.500955 | 3.273939 | 1.588342 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0009200 | RBH | 0.0 | 3.826763 | 2.546981 |
