Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_04g0009270 | OGI:04053130 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr04:17497916-17498278 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggatagggctgctgatgaagaagcggcaggaagcaaacaagtcaatgaggatcagatggatgttgacaactctaatgctgatggtgatgaattcgtaggtccgattcccccaggaccaggtactcaaggtgacgacaatgtggtggcggtcgaagagaactctagctcgcagagcggtgatactgctaccacggaagatggatcttgtggcatgatcgacgcatcaaaatcaggaggtcaggatcacatcgacagcaaggatgaacttcccactgttggtgccagtctagatgatggaagtgctgctgcatcttctgatcaagatgtctcaactgaggtgaatgccactgtccctgaatag |
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| CDS seq | atggatagggctgctgatgaagaagcggcaggaagcaaacaagtcaatgaggatcagatggatgttgacaactctaatgctgatggtgatgaattcgtaggtccgattcccccaggaccaggtactcaaggtgacgacaatgtggtggcggtcgaagagaactctagctcgcagagcggtgatactgctaccacggaagatggatcttgtggcatgatcgacgcatcaaaatcaggaggtcaggatcacatcgacagcaaggatgaacttcccactgttggtgccagtctagatgatggaagtgctgctgcatcttctgatcaagatgtctcaactgaggtgaatgccactgtccctgaatag |
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| Protein seq | MDRAADEEAAGSKQVNEDQMDVDNSNADGDEFVGPIPPGPGTQGDDNVVAVEENSSSQSGDTATTEDGSCGMIDASKSGGQDHIDSKDELPTVGASLDDGSAAASSDQDVSTEVNATVPE |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_04g0009270 | OsLiXu_04g0009270.01 | Chr04 | 17497916 | 17498278 | + | NAM | ||
| CDS seq | atggatagggctgctgatgaagaagcggcaggaagcaaacaagtcaatgaggatcagatggatgttgacaactctaatgctgatggtgatgaattcgtaggtccgattcccccaggaccaggtactcaaggtgacgacaatgtggtggcggtcgaagagaactctagctcgcagagcggtgatactgctaccacggaagatggatcttgtggcatgatcgacgcatcaaaatcaggaggtcaggatcacatcgacagcaaggatgaacttcccactgttggtgccagtctagatgatggaagtgctgctgcatcttctgatcaagatgtctcaactgaggtgaatgccactgtccctgaatag
More
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| Protein seq | MDRAADEEAAGSKQVNEDQMDVDNSNADGDEFVGPIPPGPGTQGDDNVVAVEENSSSQSGDTATTEDGSCGMIDASKSGGQDHIDSKDELPTVGASLDDGSAAASSDQDVSTEVNATVPE |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.597458 | 1.377375 | 0.952731 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0348300 | SBH | 4.640475 | 2.718461 | 14.796036 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g28090 | RBH | 2.396847 | 1.777774 | 2.955919 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0348300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0009070 | SBH | 1.125803 | 17.557976 | 12.152572 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0009860 | SBH | 0.709581 | 6.095904 | 6.823351 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0009650 | SBH | 3.991087 | 20.637604 | 18.574741 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0009310 | SBH | 0.675820 | 0.876237 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0009430 | SBH | 10.977078 | 35.008129 | 26.570427 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0264400 | SBH | 12.9881255 | 25.980748 | 31.149708 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0008540 | RBH | 0.539715 | 2.571321 | 1.995794 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0260900 | SBH | 12.9150475 | 22.404813 | 34.0874975 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0009100 | RBH | 0.535357 | 0.733448 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0008730 | SBH | 1.114773 | 30.706472 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0008780 | SBH | 14.196780 | 32.281609 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0018590 | SBH | 0.000000 | 0.0 | 1.097919 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0009440 | SBH | 0.730507 | 13.754477 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G008610 | SBH | 1.030890 | 11.266834 | 6.451518 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0008660 | SBH | 3.566684 | 23.789970 | 15.754721 |
